MC09g_new0122 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0122
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionpolygalacturonase ADPG2-like
LocationMC09: 5303448 .. 5303996 (+)
RNA-Seq ExpressionMC09g_new0122
SyntenyMC09g_new0122
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGACAAGGTTAAAAACGCGCTAGGAGATTGGAGTGAGTGTTTTTGCAGGTGTAGGAGATTGGACCACAAGTGCATATGTGCCTCAATTGACACCAACAAAGCCAATGTCAGAAAAAGAACAAGCAAGCTGTGTTGCGATGAACTTACACAGACAACAAATAGAGCTTCCACGGAGCAAGACAATGAGGATCATAATTCTCACCAACTTAGTGTTGACGATATCTTTTCAACTCCGGTCAACATTCATAAAGCTGGTATTGAGGAAGGATCCTCAATTCCTATCAATGCTGCTAAAACAAAAAATGGTCATGCACCTACCATTGAGGAAGGACAATCAAATCCAAGTGGCAATACAACCCATGATGATATTGACCATATAGAAATCGATGGAGAAAAACACTCTCAAATGGAAATCAGCTCTACCTCCAGCGACCATACCGAGAGATATGAAGGAGATGAAAATCATCCAACATCAATGCTAGTGCCCTCTTCTTGTGAAGCAGAAGTTGTGATAGCAGCAGAATATTTCATCTCAAACCCTTAA

mRNA sequence

ATGTTTGACAAGGTTAAAAACGCGCTAGGAGATTGGAGTGAGTGTTTTTGCAGGTGTAGGAGATTGGACCACAAGTGCATATGTGCCTCAATTGACACCAACAAAGCCAATGTCAGAAAAAGAACAAGCAAGCTGTGTTGCGATGAACTTACACAGACAACAAATAGAGCTTCCACGGAGCAAGACAATGAGGATCATAATTCTCACCAACTTAGTGTTGACGATATCTTTTCAACTCCGGTCAACATTCATAAAGCTGGTATTGAGGAAGGATCCTCAATTCCTATCAATGCTGCTAAAACAAAAAATGGTCATGCACCTACCATTGAGGAAGGACAATCAAATCCAAGTGGCAATACAACCCATGATGATATTGACCATATAGAAATCGATGGAGAAAAACACTCTCAAATGGAAATCAGCTCTACCTCCAGCGACCATACCGAGAGATATGAAGGAGATGAAAATCATCCAACATCAATGCTAGTGCCCTCTTCTTGTGAAGCAGAAGTTGTGATAGCAGCAGAATATTTCATCTCAAACCCTTAA

Coding sequence (CDS)

ATGTTTGACAAGGTTAAAAACGCGCTAGGAGATTGGAGTGAGTGTTTTTGCAGGTGTAGGAGATTGGACCACAAGTGCATATGTGCCTCAATTGACACCAACAAAGCCAATGTCAGAAAAAGAACAAGCAAGCTGTGTTGCGATGAACTTACACAGACAACAAATAGAGCTTCCACGGAGCAAGACAATGAGGATCATAATTCTCACCAACTTAGTGTTGACGATATCTTTTCAACTCCGGTCAACATTCATAAAGCTGGTATTGAGGAAGGATCCTCAATTCCTATCAATGCTGCTAAAACAAAAAATGGTCATGCACCTACCATTGAGGAAGGACAATCAAATCCAAGTGGCAATACAACCCATGATGATATTGACCATATAGAAATCGATGGAGAAAAACACTCTCAAATGGAAATCAGCTCTACCTCCAGCGACCATACCGAGAGATATGAAGGAGATGAAAATCATCCAACATCAATGCTAGTGCCCTCTTCTTGTGAAGCAGAAGTTGTGATAGCAGCAGAATATTTCATCTCAAACCCTTAA

Protein sequence

MFDKVKNALGDWSECFCRCRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDDIFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKHSQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP
Homology
[Close]
BLAST of MC09g_new0122 vs. NCBI nr
Match: XP_022153883.1 (polygalacturonase ADPG2-like [Momordica charantia])

HSP 1 Score: 330 bits (845), Expect = 1.19e-109
Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 0 

Query: 16  FCRCRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD 75
           F  CRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD
Sbjct: 267 FFLCRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD 326

Query: 76  IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH 135
           IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH
Sbjct: 327 IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH 386

Query: 136 SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP 182
           SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP
Sbjct: 387 SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP 433

[Close]
BLAST of MC09g_new0122 vs. ExPASy TrEMBL
Match: A0A6J1DIR2 (polygalacturonase ADPG2-like OS=Momordica charantia OX=3673 GN=LOC111021293 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 5.76e-110
Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 0 

Query: 16  FCRCRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD 75
           F  CRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD
Sbjct: 267 FFLCRRLDHKCICASIDTNKANVRKRTSKLCCDELTQTTNRASTEQDNEDHNSHQLSVDD 326

Query: 76  IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH 135
           IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH
Sbjct: 327 IFSTPVNIHKAGIEEGSSIPINAAKTKNGHAPTIEEGQSNPSGNTTHDDIDHIEIDGEKH 386

Query: 136 SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP 182
           SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP
Sbjct: 387 SQMEISSTSSDHTERYEGDENHPTSMLVPSSCEAEVVIAAEYFISNP 433

The following BLAST results are available for this feature:
BLAST of MC09g_new0122 vs.
Match NameE-valueIdentityDescription
BLAST of MC09g_new0122 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153883.11.19e-10998.80polygalacturonase ADPG2-like [Momordica charantia][more]
BLAST of MC09g_new0122 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DIR25.76e-11098.80polygalacturonase ADPG2-like OS=Momordica charantia OX=3673 GN=LOC111021293 PE=3... [more]
BLAST of MC09g_new0122 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0122.1MC09g_new0122.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004650 polygalacturonase activity