MC09g_new0014 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0014
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 646615 .. 648178 (-)
RNA-Seq Expression	MC09g_new0014
Synteny	MC09g_new0014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGACTATGGTAAATTTAATTATCTAACAGCCATTCTCCACATCCTATTTACCTTTTTGTTTGAATATTTATCTTAAATATGTGATCCAATGAATTTTAATATCAACTAAAGATTCGGAAAAATAGCATTTTCAAGATTCCAACCTAAAATCTCTTGCTTTTGCTTTGTACCATGGAAAATGTTTTTCAAGGACTCGAAATATTAATTTGGTTCGAGATCCAAACATGGGCTGATAACATCAATTATGAGGGGAAAAAAGACATTTCAAAATTTTAACTTCTCCAATTACCTATTGAATTACTACTTGAATTAAAGATTTAAGTTAATAGAGTATGATAAATTTTATTGTTTAATATATTCTCAACTAAAAACACACCCTGAAAATTATTTAATCCAATAATATCCAAACCATTACCTTCTATATATGCAAGAAATAGAGTGCTATTACATACAAATAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACGCTGCAGTATCTGTGTCGCTATACAATTAAAATAACCCAACAAAAGAGGAGAAAAGCTAAACAATAAATAGAAAAAGAAAAAAGACAGCAGCAGCAGCGACAACAAACGAAAACATCAAACCTCTGCAAATGTTTTTTTTCGCTTGTTTCTTTTCATTAGTTGGATATGGGGTTTGGACCGCTGGGAACTTCATGGGCTTCAGCTCCGAATTCTCCGGCGGTGGCTGGAGAATTACGGCGTCGAGATTGCGTCGGGTGGAAGGACGTGGCGGTGGCGGTGGAGACGGTAGCGGAAAGAATCCTATGGTTGGTGGCCGCCATGGAGGGAGGGGTTGAAATGAGGGTTAGAAGGAGGAGGGAGGAGAGGAGGAGAGAGAGAAAGAGAATGGATTTAGGAGTGAGAAAGTGGGATGAAGATGGTTTTGGAGCAGCTGCCATGCAATTTAAGACAAGAAACCACCCCCCAACACCCCACAAGGGTTCAATATCCATGAACCAGCACCAACACCTATGGAGGAAGAGAGAGAGACAGAGAAAATAGAGAGAGAGAGAGGATGGTAAGATTTTGAAACACAAATAGAGAGAGAGATGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTGAAGAAGCTTCAGCAAAAGTTAATGGGGAAAAGAGGGTTTTGAAATTGATACACATTTGTAATTGTCTAGAACCCAAGAAGATGGAAAAAAAAAACTTAACATTGAAGTATATTTGGAACTTGCTTCAAATGGGGGGTGTAAAAGTACCATCATGTCCCTATGAATACCATATGTGTGTTTTTGTGGAGCTTTGCTAGGGCTAAAAAATTAAACAAAAAAAGGTAATGTAATGCCCTAAGCCTAACATTAATGAACTCAAGAGTCACATTCCTCCCATCCCTATGACATAGATGTGCCACCCAAGTGAAAACTATCATAATAGATCAATCATCAATGCATGTCATTTCAACATGTTTGGTTCTCACTTGTCTAGTTTCTAAAAATAGAATGATACTTACCTCTTCACTATATACTAT

mRNA sequence

ATGGGGTTTGGACCGCTGGGAACTTCATGGGCTTCAGCTCCGAATTCTCCGGCGGTGGCTGGAGAATTACGGCGTCGAGATTGCGTCGGGTGGAAGGACGTGGCGGTGGCGGTGGAGACGGTAGCGGAAAGAATCCTATGGTTGGTGGCCGCCATGGAGGGAGGGGTTGAAATGAGGGTTAGAAGGAGGAGGGAGGAGAGGAGGAGAGAGAGAAAGAGAATGGATTTAGGAGTGAGAAAGTGGGATGAAGATGGTTTTGGAGCAGCTGCCATGCAATTTAAGACAAGAAACCACCCCCCAACACCCCACAAGGGTTCAATATCCATGAACCAGCACCAACACCTATGGAGGAAGAGAGAGAGACAGAGAAAATAG

Coding sequence (CDS)

ATGGGGTTTGGACCGCTGGGAACTTCATGGGCTTCAGCTCCGAATTCTCCGGCGGTGGCTGGAGAATTACGGCGTCGAGATTGCGTCGGGTGGAAGGACGTGGCGGTGGCGGTGGAGACGGTAGCGGAAAGAATCCTATGGTTGGTGGCCGCCATGGAGGGAGGGGTTGAAATGAGGGTTAGAAGGAGGAGGGAGGAGAGGAGGAGAGAGAGAAAGAGAATGGATTTAGGAGTGAGAAAGTGGGATGAAGATGGTTTTGGAGCAGCTGCCATGCAATTTAAGACAAGAAACCACCCCCCAACACCCCACAAGGGTTCAATATCCATGAACCAGCACCAACACCTATGGAGGAAGAGAGAGAGACAGAGAAAATAG

Protein sequence

MGFGPLGTSWASAPNSPAVAGELRRRDCVGWKDVAVAVETVAERILWLVAAMEGGVEMRVRRRREERRRERKRMDLGVRKWDEDGFGAAAMQFKTRNHPPTPHKGSISMNQHQHLWRKRERQRK

Homology

[Close]

BLAST of MC09g_new0014 vs. NCBI nr
Match: VVA15851.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 54.7 bits (130), Expect = 9.68e-07
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 55  GVEMRVRRRREERR-RERKRMDLGVRK-W---------DEDGFGAAAMQFKTRNHPPTPH 113
           G +M + RRR+ +  RERKR   G    W         D D  GAAAMQF  RNHPP  H
Sbjct: 31  GFDMGITRRRKMKNTRERKRSKQGFNLVWNSETDGDEDDGDVLGAAAMQFGRRNHPPRAH 90

[Close]

BLAST of MC09g_new0014 vs. NCBI nr
Match: RXH87124.1 (hypothetical protein DVH24_028624 [Malus domestica])

HSP 1 Score: 48.9 bits (115), Expect = 6.34e-05
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 82  DEDGFGAAAMQFKTRNHPPTPHKGSISMNQHQ 113
           D D  GAAAMQF  RNHPP  HKGSIS++QHQ
Sbjct: 29  DGDVLGAAAMQFGRRNHPPIAHKGSISIDQHQ 60

[Close]

BLAST of MC09g_new0014 vs. ExPASy TrEMBL
Match: A0A5E4EMN2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B000224 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.69e-07
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 55  GVEMRVRRRREERR-RERKRMDLGVRK-W---------DEDGFGAAAMQFKTRNHPPTPH 113
           G +M + RRR+ +  RERKR   G    W         D D  GAAAMQF  RNHPP  H
Sbjct: 31  GFDMGITRRRKMKNTRERKRSKQGFNLVWNSETDGDEDDGDVLGAAAMQFGRRNHPPRAH 90

[Close]

BLAST of MC09g_new0014 vs. ExPASy TrEMBL
Match: A0A498IYB6 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_028624 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.07e-05
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 82  DEDGFGAAAMQFKTRNHPPTPHKGSISMNQHQ 113
           D D  GAAAMQF  RNHPP  HKGSIS++QHQ
Sbjct: 29  DGDVLGAAAMQFGRRNHPPIAHKGSISIDQHQ 60

The following BLAST results are available for this feature:

BLAST of MC09g_new0014 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0014 vs. NCBI nr


Match Name	E-value	Identity	Description
VVA15851.1	9.68e-07	52.86	Hypothetical predicted protein [Prunus dulcis]	[more]
RXH87124.1	6.34e-05	71.88	hypothetical protein DVH24_028624 [Malus domestica]	[more]

BLAST of MC09g_new0014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4EMN2	4.69e-07	52.86	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B000224 PE=4 SV=1	[more]
A0A498IYB6	3.07e-05	71.88	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_028624 PE=4 SV=1	[more]

BLAST of MC09g_new0014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0014.1	MC09g_new0014.1	mRNA