MC09g1568 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1568
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNL-type domain-containing protein
Location	MC09: 21408607 .. 21408735 (-)
RNA-Seq Expression	MC09g1568
Synteny	MC09g1568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGCAACCATTGACATAAAGCTTCCAAGAAGAAATTTGCTGGTGGAATTTACATGTAACCAATGTAATGGGAGGACAAAGAGGATTATAAATCGATTAGCTTACGAACGGGGGCTTGTGTTTGTTCAG

mRNA sequence

GGGGCAACCATTGACATAAAGCTTCCAAGAAGAAATTTGCTGGTGGAATTTACATGTAACCAATGTAATGGGAGGACAAAGAGGATTATAAATCGATTAGCTTACGAACGGGGGCTTGTGTTTGTTCAG

Coding sequence (CDS)

GGGGCAACCATTGACATAAAGCTTCCAAGAAGAAATTTGCTGGTGGAATTTACATGTAACCAATGTAATGGGAGGACAAAGAGGATTATAAATCGATTAGCTTACGAACGGGGGCTTGTGTTTGTTCAG

Protein sequence

GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ

Homology

[Close]

BLAST of MC09g1568 vs. NCBI nr
Match: XP_022149076.1 (uncharacterized protein LOC111017577 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.07e-19
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIK PRR+LLVEFTCNQCNGRTKRIINRLAYERGLVFVQ
Sbjct: 92  GAAIDIKFPRRSLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 134

[Close]

BLAST of MC09g1568 vs. NCBI nr
Match: XP_022956512.1 (uncharacterized protein LOC111458229 isoform X3 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 2.11e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 92  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 134

[Close]

BLAST of MC09g1568 vs. NCBI nr
Match: XP_023511601.1 (DNL-type zinc finger protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 3.70e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 90  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 132

[Close]

BLAST of MC09g1568 vs. NCBI nr
Match: XP_022987101.1 (DNL-type zinc finger protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 3.70e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 90  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 132

[Close]

BLAST of MC09g1568 vs. NCBI nr
Match: XP_022956510.1 (mitochondrial protein import protein ZIM17 isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 3.70e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 90  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 132

[Close]

BLAST of MC09g1568 vs. ExPASy TrEMBL
Match: A0A6J1D799 (uncharacterized protein LOC111017577 OS=Momordica charantia OX=3673 GN=LOC111017577 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.19e-20
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIK PRR+LLVEFTCNQCNGRTKRIINRLAYERGLVFVQ
Sbjct: 92  GAAIDIKFPRRSLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 134

[Close]

BLAST of MC09g1568 vs. ExPASy TrEMBL
Match: A0A6J1GWJ5 (uncharacterized protein LOC111458229 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.02e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 92  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 134

[Close]

BLAST of MC09g1568 vs. ExPASy TrEMBL
Match: A0A6J1JD66 (DNL-type zinc finger protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484608 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.79e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 90  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 132

[Close]

BLAST of MC09g1568 vs. ExPASy TrEMBL
Match: A0A6J1GXZ4 (mitochondrial protein import protein ZIM17 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.79e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 90  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 132

[Close]

BLAST of MC09g1568 vs. ExPASy TrEMBL
Match: A0A6J1J9C7 (DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484608 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.87e-17
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1   GATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 43
           GA IDIKLPRR+LLV FTCNQC  RTKR+INRLAYERGLVFVQ
Sbjct: 92  GAAIDIKLPRRSLLVTFTCNQCGDRTKRLINRLAYERGLVFVQ 134

[Close]

BLAST of MC09g1568 vs. TAIR 10
Match: AT1G68730.1 (Zim17-type zinc finger protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 2   ATIDIKLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 44
           A+IDIKLPRR+L VEFTCN C  RTKR+INR AYE+GLVFVQ
Sbjct: 95  ASIDIKLPRRSLQVEFTCNSCGERTKRLINRHAYEKGLVFVQ 136

[Close]

BLAST of MC09g1568 vs. TAIR 10
Match: AT5G27280.1 (Zim17-type zinc finger protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-05
Identity = 22/37 (59.46%), Postives = 23/37 (62.16%), Query Frame = 0


Query: 7   KLPRRNLLVEFTCNQCNGRTKRIINRLAYERGLVFVQ 44
           K PRR + V FTCN C  RT R IN  AY  G VFVQ
Sbjct: 115 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQ 151

The following BLAST results are available for this feature:

BLAST of MC09g1568 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g1568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149076.1	1.07e-19	93.02	uncharacterized protein LOC111017577 [Momordica charantia]	[more]
XP_022956512.1	2.11e-17	86.05	uncharacterized protein LOC111458229 isoform X3 [Cucurbita moschata]	[more]
XP_023511601.1	3.70e-17	86.05	DNL-type zinc finger protein isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022987101.1	3.70e-17	86.05	DNL-type zinc finger protein isoform X2 [Cucurbita maxima]	[more]
XP_022956510.1	3.70e-17	86.05	mitochondrial protein import protein ZIM17 isoform X2 [Cucurbita moschata]	[more]

BLAST of MC09g1568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D799	5.19e-20	93.02	uncharacterized protein LOC111017577 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1GWJ5	1.02e-17	86.05	uncharacterized protein LOC111458229 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JD66	1.79e-17	86.05	DNL-type zinc finger protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484...	[more]
A0A6J1GXZ4	1.79e-17	86.05	mitochondrial protein import protein ZIM17 isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1J9C7	1.87e-17	86.05	DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484...	[more]

BLAST of MC09g1568 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68730.1	1.3e-13	78.57	Zim17-type zinc finger protein	[more]
AT5G27280.1	1.0e-05	59.46	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 15..43 e-value: 1.1E-7 score: 31.6
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 8..43 score: 9.433112
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 1..43
None	No IPR available	PANTHER	PTHR20922:SF19	F24J5.3	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1568.1	MC09g1568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008270	zinc ion binding