MC09g1352 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1352
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RNase H domain-containing protein
Location	MC09: 19600185 .. 19600394 (+)
RNA-Seq Expression	MC09g1352
Synteny	MC09g1352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATGTTGATGCAGTTTGGCATTGGAATTATTGGGCGAAATAGTGATGGAGATGTCTTGATAACACTATCGAAGGTCTTTGAGGTGTACTACGATCCGTTAATTGCAGAACTACTGGGCATCCGGGAGTGCATGCGGTTGGCGAGTCATCTAGGCTTCAAGGATATCTTGGTGGAGTCCGATTGCCTCATGGCCGTCGAATCCATCAAC

mRNA sequence

TCAATGTTGATGCAGTTTGGCATTGGAATTATTGGGCGAAATAGTGATGGAGATGTCTTGATAACACTATCGAAGGTCTTTGAGGTGTACTACGATCCGTTAATTGCAGAACTACTGGGCATCCGGGAGTGCATGCGGTTGGCGAGTCATCTAGGCTTCAAGGATATCTTGGTGGAGTCCGATTGCCTCATGGCCGTCGAATCCATCAAC

Coding sequence (CDS)

TCAATGTTGATGCAGTTTGGCATTGGAATTATTGGGCGAAATAGTGATGGAGATGTCTTGATAACACTATCGAAGGTCTTTGAGGTGTACTACGATCCGTTAATTGCAGAACTACTGGGCATCCGGGAGTGCATGCGGTTGGCGAGTCATCTAGGCTTCAAGGATATCTTGGTGGAGTCCGATTGCCTCATGGCCGTCGAATCCATCAAC

Protein sequence

SMLMQFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAVESIN

Homology

[Close]

BLAST of MC09g1352 vs. NCBI nr
Match: XP_010665605.1 (PREDICTED: uncharacterized protein LOC104882889 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.6 bits (161), Expect = 3.46e-11
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 7   GIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAV 66
           GIG+I RNSDGDVL + S+    Y+ P IAE   I   +RL  H GFK+++ ESDC + +
Sbjct: 87  GIGVIARNSDGDVLFSASRRIRAYWTPEIAEAKAIAVAVRLGKHFGFKEVIFESDCQVVI 146

Query: 67  ESIN 70
             ++
Sbjct: 147 NRLS 150

[Close]

BLAST of MC09g1352 vs. NCBI nr
Match: XP_035541483.1 (uncharacterized protein LOC118344571 [Juglans regia])

HSP 1 Score: 57.0 bits (136), Expect = 1.25e-07
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 5   QFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLM 64
           + GIGII RN  G V+ T      +Y DP +AE +G  E  RL  HLG  +I++E D L 
Sbjct: 79  KVGIGIIVRNHTGSVVATSRLNRPLYPDPALAEAIGALEAARLCHHLGLTNIILEGDALQ 138

Query: 65  AVESIN 70
            +++IN
Sbjct: 139 VIQAIN 144

[Close]

BLAST of MC09g1352 vs. NCBI nr
Match: XP_038717221.1 (uncharacterized protein LOC120010502 [Tripterygium wilfordii])

HSP 1 Score: 57.0 bits (136), Expect = 1.41e-07
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 7   GIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAV 66
           GIG+I R+S GDVL   S V++   DP +AE +G    ++LA  LGF ++LVE D  + V
Sbjct: 115 GIGVIYRDSSGDVLACSSLVWQTKLDPSLAEAMGALHAIKLARELGFNNLLVEGDSSIIV 174

Query: 67  ESI 69
           ++I
Sbjct: 175 DAI 177

[Close]

BLAST of MC09g1352 vs. NCBI nr
Match: KAF5447347.1 (hypothetical protein F2P56_032905 [Juglans regia])

HSP 1 Score: 57.0 bits (136), Expect = 1.48e-07
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 5   QFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLM 64
           + GIGII RN  G V+ T      +Y DP +AE +G  E  RL  HLG  +I++E D L 
Sbjct: 96  KVGIGIIVRNHTGSVVATSRLNRPLYPDPALAEAIGALEAARLCHHLGLTNIILEGDALQ 155

Query: 65  AVESIN 70
            +++IN
Sbjct: 156 VIQAIN 161

[Close]

BLAST of MC09g1352 vs. NCBI nr
Match: XP_042962682.1 (uncharacterized protein LOC122296954 [Carya illinoinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.92e-07
Identity = 24/66 (36.36%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 5   QFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLM 64
           + GIG++ R+ +GDV+++L        DPL+AEL  +R+ M+L + L   D++ E D L 
Sbjct: 122 RMGIGVVIRDENGDVMVSLCSQRRNVRDPLVAELQALRQAMKLCADLNITDVIFEGDALK 181

Query: 65  AVESIN 70
            V+++N
Sbjct: 182 VVKAVN 187

[Close]

BLAST of MC09g1352 vs. ExPASy TrEMBL
Match: A0A6P9EAW2 (uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.07e-08
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 5   QFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLM 64
           + GIGII RN  G V+ T      +Y DP +AE +G  E  RL  HLG  +I++E D L 
Sbjct: 79  KVGIGIIVRNHTGSVVATSRLNRPLYPDPALAEAIGALEAARLCHHLGLTNIILEGDALQ 138

Query: 65  AVESIN 70
            +++IN
Sbjct: 139 VIQAIN 144

[Close]

BLAST of MC09g1352 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.04e-07
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 8   IGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAV 66
           IGI+ RN  G +L   S+  E Y+DPL+AE L + E +RLA HL  + +  ESD L  +
Sbjct: 50  IGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLNIQQVQFESDSLQLI 108

[Close]

BLAST of MC09g1352 vs. ExPASy TrEMBL
Match: A0A2I4H2K4 (uncharacterized protein LOC109012930 OS=Juglans regia OX=51240 GN=LOC109012930 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.82e-07
Identity = 22/65 (33.85%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 5  QFGIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLM 64
          + GIG+I RNS+G ++ +L    +++ DPL+ E +  R      + LGF+ +++E D L+
Sbjct: 31 RVGIGVIVRNSEGAIMASLCSSMDLFPDPLLGEAIAARRASSFCADLGFQHVILEGDSLL 90

Query: 65 AVESI 69
           V++I
Sbjct: 91 VVKAI 95

[Close]

BLAST of MC09g1352 vs. ExPASy TrEMBL
Match: A0A446YT68 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G189960 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.98e-07
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 7  GIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAV 66
          GIG++ RN  GD+L+  +KVF    +P +AE L IR  + +    GF  I + SDCL  V
Sbjct: 2  GIGVVVRNHSGDLLVACNKVFPGIPEPELAEALAIRHALNICQAEGFMHISLVSDCLSMV 61

Query: 67 ESI 69
            I
Sbjct: 62 NKI 64

[Close]

BLAST of MC09g1352 vs. ExPASy TrEMBL
Match: A0A5C7GW84 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.07e-07
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 7  GIGIIGRNSDGDVLITLSKVFEVYYDPLIAELLGIRECMRLASHLGFKDILVESDCLMAV 66
          GI ++ RN  G V+++  K F+  Y P IAE L + E +RLA + GF   ++ESD LM V
Sbjct: 18 GIAVVIRNFQGKVMLSFCKNFQACYSPQIAEALAVVEGLRLAKNGGFFPAVLESDALMVV 77

Query: 67 ESI 69
            I
Sbjct: 78 RDI 80

The following BLAST results are available for this feature:

BLAST of MC09g1352 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g1352 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010665605.1	3.46e-11	45.31	PREDICTED: uncharacterized protein LOC104882889 [Beta vulgaris subsp. vulgaris]	[more]
XP_035541483.1	1.25e-07	42.42	uncharacterized protein LOC118344571 [Juglans regia]	[more]
XP_038717221.1	1.41e-07	44.44	uncharacterized protein LOC120010502 [Tripterygium wilfordii]	[more]
KAF5447347.1	1.48e-07	42.42	hypothetical protein F2P56_032905 [Juglans regia]	[more]
XP_042962682.1	1.92e-07	36.36	uncharacterized protein LOC122296954 [Carya illinoinensis]	[more]

BLAST of MC09g1352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EAW2	6.07e-08	42.42	uncharacterized protein LOC118344571 OS=Juglans regia OX=51240 GN=LOC118344571 P...	[more]
A0A6J1CNR4	1.04e-07	44.07	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A2I4H2K4	4.82e-07	33.85	uncharacterized protein LOC109012930 OS=Juglans regia OX=51240 GN=LOC109012930 P...	[more]
A0A446YT68	5.98e-07	41.27	RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T...	[more]
A0A5C7GW84	6.07e-07	42.86	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_024858 ...	[more]

BLAST of MC09g1352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 7..70 e-value: 2.1E-10 score: 40.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..70 e-value: 6.7E-6 score: 28.2
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 7..70 e-value: 4.36561E-10 score: 49.62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1352.1	MC09g1352.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity