MC09g1262 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1262
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	MC09: 18762732 .. 18762956 (+)
RNA-Seq Expression	MC09g1262
Synteny	MC09g1262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTCTCCAGTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGGCAGACTTAATTTTAACAGCGGGTACCGTAATAATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCA

mRNA sequence

AGACTCTCCAGTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGGCAGACTTAATTTTAACAGCGGGTACCGTAATAATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCA

Coding sequence (CDS)

AGACTCTCCAGTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGACTGGTACCAAGATCTAGTCCTAGACAGGCAGACTTAATTTTAACAGCGGGTACCGTAATAATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCA

Protein sequence

RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSLVRLYEQMPEPKYVIA

Homology

[Close]

BLAST of MC09g1262 vs. ExPASy Swiss-Prot
Match: A9LYA5 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus OX=263995 GN=ndhK PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy Swiss-Prot
Match: Q3V530 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus OX=4465 GN=ndhK PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy Swiss-Prot
Match: A4QJB9 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema cordifolium OX=434059 GN=ndhK PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy Swiss-Prot
Match: A4QJK3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=ndhK PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy Swiss-Prot
Match: A1EA12 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Agrostis stolonifera OX=63632 GN=ndhK PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. NCBI nr
Match: ASD43958.1 (NADH-plastoquinone oxidoreductase subunit K, partial [Pseudoroegneria strigosa])

HSP 1 Score: 151 bits (381), Expect = 1.91e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. NCBI nr
Match: APU54679.1 (NADH dehydrogenase subunit K, partial [Citrus x paradisi] >APU54680.1 NADH dehydrogenase subunit K, partial [Citrus japonica] >APU54681.1 NADH dehydrogenase subunit K, partial [Citrus sinensis])

HSP 1 Score: 151 bits (381), Expect = 2.09e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. NCBI nr
Match: QKX45206.1 (NADH plastoquinone oxidoreductase subunit K [Stevia origanoides] >QKX45214.1 NADH plastoquinone oxidoreductase subunit K [Tagetes tenuifolia] >QKX45230.1 NADH plastoquinone oxidoreductase subunit K [Tithonia tubaeformis])

HSP 1 Score: 151 bits (381), Expect = 2.23e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. NCBI nr
Match: AFU96603.1 (NdhK, partial [Euphronia guianensis])

HSP 1 Score: 151 bits (381), Expect = 2.37e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
          RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 21 RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 80

Query: 61 VRLYEQMPEPKYVIA 75
          VRLYEQMPEPKYVIA
Sbjct: 81 VRLYEQMPEPKYVIA 95

[Close]

BLAST of MC09g1262 vs. NCBI nr
Match: ASD47759.1 (NADH-plastoquinone oxidoreductase subunit K, partial [Triticum turgidum])

HSP 1 Score: 151 bits (381), Expect = 2.44e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy TrEMBL
Match: A0A218LR06 (NADH-plastoquinone oxidoreductase subunit K (Fragment) OS=Pseudoroegneria strigosa OX=129766 GN=ndhK PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 9.24e-46
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy TrEMBL
Match: A0A1P8DCN8 (NADH dehydrogenase subunit K (Fragment) OS=Citrus japonica OX=76966 GN=ndhK PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.01e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy TrEMBL
Match: A0A1P8DCP1 (NADH dehydrogenase subunit K (Fragment) OS=Citrus paradisi OX=37656 GN=ndhK PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.01e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy TrEMBL
Match: A0A1P8DCP3 (NADH dehydrogenase subunit K (Fragment) OS=Citrus sinensis OX=2711 GN=ndhK PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.01e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. ExPASy TrEMBL
Match: A0A7D4XX48 (NADH plastoquinone oxidoreductase subunit K OS=Tithonia tubaeformis OX=684025 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.08e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 75
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-37
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV MKMAPSL
Sbjct: 30  RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSL 89

Query: 61  VRLYEQMPEPKYVIA 76
           VRLYEQMPEPKYVIA
Sbjct: 90  VRLYEQMPEPKYVIA 104

[Close]

BLAST of MC09g1262 vs. TAIR 10
Match: AT5G11770.1 (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial )

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-18
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 1   RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVIMKMAPSL 60
           R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D ++ AGT+  KMAP+L
Sbjct: 80  RTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPAL 139

Query: 61  VRLYEQMPEPKYVIA 76
            ++Y+QMPEP++VI+
Sbjct: 140 RKVYDQMPEPRWVIS 154

The following BLAST results are available for this feature:

BLAST of MC09g1262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYA5	1.9e-36	98.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus americanus OX=...	[more]
Q3V530	1.9e-36	98.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Acorus calamus OX=446...	[more]
A4QJB9	1.9e-36	98.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema cordifoliu...	[more]
A4QJK3	1.9e-36	98.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Aethionema grandiflor...	[more]
A1EA12	1.9e-36	98.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Agrostis stolonifera ...	[more]

BLAST of MC09g1262 vs. NCBI nr


Match Name	E-value	Identity	Description
ASD43958.1	1.91e-45	98.67	NADH-plastoquinone oxidoreductase subunit K, partial [Pseudoroegneria strigosa]	[more]
APU54679.1	2.09e-45	98.67	NADH dehydrogenase subunit K, partial [Citrus x paradisi] >APU54680.1 NADH dehyd...	[more]
QKX45206.1	2.23e-45	98.67	NADH plastoquinone oxidoreductase subunit K [Stevia origanoides] >QKX45214.1 NAD...	[more]
AFU96603.1	2.37e-45	98.67	NdhK, partial [Euphronia guianensis]	[more]
ASD47759.1	2.44e-45	98.67	NADH-plastoquinone oxidoreductase subunit K, partial [Triticum turgidum]	[more]

BLAST of MC09g1262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218LR06	9.24e-46	98.67	NADH-plastoquinone oxidoreductase subunit K (Fragment) OS=Pseudoroegneria strigo...	[more]
A0A1P8DCN8	1.01e-45	98.67	NADH dehydrogenase subunit K (Fragment) OS=Citrus japonica OX=76966 GN=ndhK PE=3...	[more]
A0A1P8DCP1	1.01e-45	98.67	NADH dehydrogenase subunit K (Fragment) OS=Citrus paradisi OX=37656 GN=ndhK PE=3...	[more]
A0A1P8DCP3	1.01e-45	98.67	NADH dehydrogenase subunit K (Fragment) OS=Citrus sinensis OX=2711 GN=ndhK PE=3 ...	[more]
A0A7D4XX48	1.08e-45	98.67	NADH plastoquinone oxidoreductase subunit K OS=Tithonia tubaeformis OX=684025 PE...	[more]

BLAST of MC09g1262 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	1.3e-37	98.67	photosystem II reaction center protein G	[more]
AT5G11770.1	4.0e-18	46.67	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12280		coord: 1..75 e-value: 3.5E-29 score: 103.1
None	No IPR available	PANTHER	PTHR11995:SF14	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 1..75
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 1..75
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1262.1	MC09g1262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding