Homology
BLAST of MC09g1024 vs. ExPASy Swiss-Prot
Match:
Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1365.1 bits (3532), Expect = 0.0e+00
Identity = 685/1113 (61.55%), Postives = 834/1113 (74.93%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQ++GFP GV EEVK+F+ER+TGSGT+ AIK ++ G RV A +QFT++ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII A RLYYG SYLKA E +QDI+P P + GL++ GCQ+S + F L +
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
+V V FG R L F S DY L L YEN+WQ+ LH PQG+S +L+IQ+ GAP+I
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSS-KFLVIQVIGAPKI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
+E+ + +L +S D +W R TDFT S CIGQS+ CLE+P +P+ +
Sbjct: 181 FEKEDQPIN-LLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPN-LVPIVRPPRNISLPYAILFKINLLVQNGCLPGP 300
FA+Y + F ++ GS+YSSN N LVP+V PP SLP+ ILFK+N LVQN CL GP
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 ALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIM 360
ALD+ FY++++ ++ + IDH L KL+HL ECCY P+ WL DEY+K+ P P +
Sbjct: 301 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 360
Query: 361 SLNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTE 420
SL++GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ S +
Sbjct: 361 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 420
Query: 421 LSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGIT 480
LSPR S+ +TK++ RI SVLRDGI IGDKKFEFLA+SSSQLRENSAWMFAP D IT
Sbjct: 421 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 480
Query: 481 AAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFS 540
AA IR WMGDF IRNVAKYAARLGQSF SS ETL+V E+EVIPD+E+ S G +YVFS
Sbjct: 481 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 540
Query: 541 DGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYES 600
DGIGKISA FARKVA+KCG+ +PSAFQIRY G+KGV++VDP SS KLSLR SM K+ES
Sbjct: 541 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 600
Query: 601 TDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQA 660
+TKLDVL WSK PCY+NRQLITLLSTLGV D VFEKKQ+E++D+LD I T ++A +A
Sbjct: 601 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 660
Query: 661 LELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMG 720
L LM+PGE TN+LK +I CGY+PD+EPFLSMML FR SKLLELR K+RIFI GR+MMG
Sbjct: 661 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 720
Query: 721 CLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRV 780
CLDET LEYG+V VQ + + R FI TG V VAKNPCLHPGDVRV
Sbjct: 721 CLDETRTLEYGQVVVQYSDPM------------RPGRRFIITGPVVVAKNPCLHPGDVRV 780
Query: 781 LTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
L AV+VP+L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+ EPMDYT
Sbjct: 781 LQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYT 840
Query: 841 PVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFS 900
P P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD+EP KA S PCIELAK FS
Sbjct: 841 PEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFS 900
Query: 901 IAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDE-IEPKIDIRS 960
AVDFPKTGV A+IP +L V+EYPDFM+K DK TY+S+NV+GKLFR + E P I I+S
Sbjct: 901 TAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FT DVA ++YD DMEV+GFEEY+D+A Y K NYD +LGNLM+YY IK EAE++SGG +
Sbjct: 961 FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRM 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TK+ +AESI AVR+LRKE S FN + E N A+ASAWY VTYH SYWG
Sbjct: 1021 SKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1111
++EG + H +SF WCVYDKLVRIKK + R
Sbjct: 1081 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091
BLAST of MC09g1024 vs. ExPASy Swiss-Prot
Match:
Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)
HSP 1 Score: 917.9 bits (2371), Expect = 1.1e-265
Identity = 457/731 (62.52%), Postives = 575/731 (78.66%), Query Frame = 0
Query: 378 VYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 437
VYF GPE+NVSNRV+R + ++NFLR+SFVDE+ +KL +T+LSPR +S + +T ++K
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 438 RILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVA 497
R+LSVL DGITIG K FEFLA+SSSQLR+NSAWMFA + G+ A+ IR WMGDFR+IRNVA
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 498 KYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKC 557
KYAARLGQSF SSTETL V + EVE I DI+ +G ++VFSDGIGKIS++FA +VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 558 GI-RHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYL 617
+ R PSAFQIRY G+KGV++VDPTS KLSLR SMLK++S + +DVL +SK P +L
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 618 NRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMIS 677
NRQLITLLSTLGV D VFE+KQ+E ++QL+ + TD A +A+ELM GEITN +KE++
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 678 CGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCT 737
CGY+PD EP+LSM+L TFR SKLLEL+ KSRI IP GRAMMGCLDET L+YG+VF++ T
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368
Query: 738 AHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVF 797
+ N F TG V +AKNPCLHPGD+R+L AVDVP LHHM +CVVF
Sbjct: 369 SGV------------NDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVF 428
Query: 798 PQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSKLLDHDVTMEEVQE 857
PQ+GPRPHPNECSGSDLDGDIYFV WDP LIPP+ V PMDYTP P++ LDHDVT+EEV+E
Sbjct: 429 PQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEE 488
Query: 858 YFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANL 917
YF NY+VN+SLG+IANAH FAD+E KA S PCIELAKLFSIAVDFPKTGVPALIP L
Sbjct: 489 YFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPEL 548
Query: 918 RVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTRDVARQAYDPDMEVEGF 977
V+EYPDFM+K DKVTY+S+ V+GKL+R + + P I+ FTR+VAR++YD DM V+G+
Sbjct: 549 HVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP--HIKHFTREVARRSYDTDMIVDGY 608
Query: 978 EEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRS 1037
E+Y+ +A+ K YD +LGNLM++Y IK+EAE+ISG L + + TKK++A++I AVRS
Sbjct: 609 EDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRS 668
Query: 1038 LRKEARSWFNENAELHFRHGNNV-YARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCV 1097
LRKEARS F+E + HG++ A+ASAWY VTYH +WG ++EG + H ISFPWC+
Sbjct: 669 LRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCI 722
Query: 1098 YDKLVRIKKQK 1107
Y+KL+RIK+++
Sbjct: 729 YEKLLRIKQRR 722
BLAST of MC09g1024 vs. ExPASy Swiss-Prot
Match:
O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)
HSP 1 Score: 746.9 bits (1927), Expect = 3.3e-214
Identity = 432/1132 (38.16%), Postives = 654/1132 (57.77%), Query Frame = 0
Query: 4 TIQLYGFPTGVVQEEVKEFVERITGSGTIDA--IKTKRSNGRGKRVCATIQFTNDE-GAK 63
T+++ P +V +E+ F+E G T+ A I T R N + R A +QFT E ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWK-PRDFARVQFTTLEVKSR 70
Query: 64 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKES-FFVLQTE 123
+ + +L + + L+ E DI+P P+ + L +G S E F L+
Sbjct: 71 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130
Query: 124 LNVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQ-SDVDYLLIQLFGAP 183
V ++R + F++ S Y + +R+E++ + G S++D L++L P
Sbjct: 131 DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGP 190
Query: 184 RIYERNSESFGPILDDPFINFSKE-IDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPN 243
++++R + F KE D W R TDF+ S IG S+ CLE+ G + +
Sbjct: 191 KVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLD 250
Query: 244 LHDKFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPP-RNISLPYAILFKINLLVQNGCL 303
+ Y++E T G T++S +VP++ + PY ILF++N LV +
Sbjct: 251 IFSGLP-YYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 310
Query: 304 P-GPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYF-KARNPP 363
A D+ +++ + L KL+ CY+P ++ + + K ++ P
Sbjct: 311 SLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSP 370
Query: 364 QPPIMSLNE-GLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELD 423
L E ++ R VTP ++Y GPE+ +N V++ + E++ +F+RV+FV+E+
Sbjct: 371 ASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWS 430
Query: 424 KLYSTELS--PRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWM 483
KL + LS +E ++ +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR NS WM
Sbjct: 431 KLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWM 490
Query: 484 FAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVES 543
FA + + A IR+WMG FR IR+++K AAR+GQ F +S +TL V ++VE IPDIEV +
Sbjct: 491 FASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT 550
Query: 544 DGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRN 603
DG Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY G+KGVI+VD +S KLSLR+
Sbjct: 551 DGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRD 610
Query: 604 SMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTD 663
SMLK++S + L+V W++S+PC+LNR++I LLSTLG+ED +FE Q + L + D
Sbjct: 611 SMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLED 670
Query: 664 SMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIP 723
A L+ +S N+L +M+ GY P SEP+LSMML +S+L EL+ + RI +P
Sbjct: 671 RDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 730
Query: 724 NGRAMMGCLDETGNLEYGEVFVQCT-AHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPC 783
GR ++GC+DE G LEYG+V+V+ T +L+ + R + G V V KNPC
Sbjct: 731 KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPC 790
Query: 784 LHPGDVRVLTAVDVPSLHH--MVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIP 843
LHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD +IP
Sbjct: 791 LHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIP 850
Query: 844 PQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSK 903
+ PMDY +L+DHDVT+EE+ ++F +YM++D+LG+I+ AH ADR+P+KA S+
Sbjct: 851 SEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQ 910
Query: 904 PCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDE 963
C+ELA L S AVDF KTG PA +P L+ E+PDF+++ +K TY SE+V GKL+R +
Sbjct: 911 KCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS 970
Query: 964 IEPKIDIRSFTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAE 1023
+ + + D AYD +E GFE +++ A H+ Y +L +LM YY NE E
Sbjct: 971 SLAQRKPEAESEDTV--AYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1030
Query: 1024 LISGGSLSRSLSATKKNE-----AESIATAVRSLRKEARSWFNENAELHFRHGNNVYARA 1083
+++G ++ + + N + I +V+ L KEA WF ++ E A
Sbjct: 1031 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DEQQKKKLA 1090
Query: 1084 SAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1116
SAWY+VTY+ ++ + +SFPW V D L+ IK A NA+R+
Sbjct: 1091 SAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK-----AENAQRQ 1121
BLAST of MC09g1024 vs. ExPASy Swiss-Prot
Match:
Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)
HSP 1 Score: 738.4 bits (1905), Expect = 1.2e-211
Identity = 436/1133 (38.48%), Postives = 642/1133 (56.66%), Query Frame = 0
Query: 11 PTGVVQEEVKEFVERITGSGTIDAIKTKRSN-GRGKRVCATIQFTNDEGAKLIIFLA-NG 70
P+ V E + F + +G A + ++ G R T+QF + A LA +G
Sbjct: 19 PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78
Query: 71 RL-YYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTELNVSVDFG 130
RL + + L D+LP G L +G ++++ F V +
Sbjct: 79 RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138
Query: 131 FDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRIYERNSES 190
+R + ++ H Y L + +E++ G + L+QL APRI+ S
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGAI---LLQLNYAPRIHTAIS-- 198
Query: 191 FGP-----ILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHDKF 250
GP +DD F ++ W RA DFTP+ G+ S L L++ + ++
Sbjct: 199 -GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL 258
Query: 251 AHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPALD 310
F G+ T++ ++ N+VP+V PR+ S+PY +LF++N L+ G + ++
Sbjct: 259 P--FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVN 318
Query: 311 ISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMSLN 370
++ + Q + K++ L+ CY P +++ E ++ N ++ N
Sbjct: 319 ADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHN-----VLLSN 378
Query: 371 EG-------LVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKL 430
EG L+ +RV +TP +++ GPE V+N V++ + Y +F+RV+FVDE+ KL
Sbjct: 379 EGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKL 438
Query: 431 YSTELSPRESSSL--EDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFA 490
S +S R + KT ++ RILS+L+ G +IG K FEFLA+S+SQLR NS WMFA
Sbjct: 439 SSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFA 498
Query: 491 PKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDG 550
+ A GIR+WMG F +IR+V+K AAR+GQ F SS +T V R +VEVIPDIE+ +DG
Sbjct: 499 SNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDG 558
Query: 551 VKYVFSDGIGKISASFARKVAQKCGIRHT--PSAFQIRYAGFKGVISVDPTSSVKLSLRN 610
KY+FSDGIGKIS FA++VA G+ T PSAFQIRY G+KGVI++DP SS+ LSLR
Sbjct: 559 SKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRP 618
Query: 611 SMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTD 670
SM K+ES L++ WSKS PCY+NR++I+LLSTLG+ D +F Q++ M + + + T+
Sbjct: 619 SMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTN 678
Query: 671 SMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIP 730
A L + E +K M+ GY P SEP+LSM+L ++++L ++R + +I +P
Sbjct: 679 KEVALSVLGKLGGSETKTAVK-MLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVP 738
Query: 731 NGRAMMGCLDETGNLEYGEVFVQCTAHQQLQ-DDHIIFKRGKSNRHFIATGTVAVAKNPC 790
GR ++GCLDETG LEYG+V+++ T + + Q D + + + G VA+ KNPC
Sbjct: 739 KGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPC 798
Query: 791 LHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQ 850
LHPGD+RVL A+ P L MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WD LIP +
Sbjct: 799 LHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK 858
Query: 851 QVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPC 910
PMDYT +++DH VT+EE+Q++F +YM+NDSLG I+ AH ADR P KA S C
Sbjct: 859 VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPEC 918
Query: 911 IELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFR-MLDEI 970
++LA L S+AVDF KTG PA +P LR EYPDFM++ +K Y S VLGKL+R + +
Sbjct: 919 LQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHM 978
Query: 971 EPKIDIRSFTRDVARQA--YDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEA 1030
E D + + A+ + YDPD+EV G +E+L A + Y+ +L LMNYYR + E
Sbjct: 979 EKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELED 1038
Query: 1031 ELISGGSLSRSLSATKKNE-----AESIATAVRSLRKEARSWFNENAELHFRHGNNVYAR 1090
E+++G ++ L + N+ + I AV +L +EAR W L R +
Sbjct: 1039 EILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSSRKEEDASRM 1098
Query: 1091 ASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1116
ASAWY VTYH + + SFPW D L+ I K S++ RRR
Sbjct: 1099 ASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAI---KASSQLRRRR 1120
BLAST of MC09g1024 vs. ExPASy Swiss-Prot
Match:
Q8LHH9 (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1)
HSP 1 Score: 577.8 bits (1488), Expect = 2.7e-163
Identity = 397/1118 (35.51%), Postives = 583/1118 (52.15%), Query Frame = 0
Query: 49 ATIQFTNDEGAKLIIFLA-NGRLYYGSSYLK---AKEWKQDILPNPLVFEYNFKGLRLHL 108
A + F EGA+ LA RL L+ A + + + + F +RL +
Sbjct: 100 AFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRSSIAPFRFPDVRLEV 159
Query: 109 GCQISKESFFVL----QTELNVSVD-------FGFDRRVLSFF-----ISHSHVDYMLVL 168
G S +F L++SVD F R F ++ D L
Sbjct: 160 GALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGFREVAAIRCDVKLEF 219
Query: 169 RYENVWQVQLHKPQGQSDVDYLLIQLFGAPRIYERNSESFGPILDDPFINFSKEIDTKWF 228
+V +V+L++ LL++L AP ++ R ++ +P + D W
Sbjct: 220 PVRDVLEVRLYRLDCS-----LLLRLAAAPLVHYRTADD---DFHEPVPFDLLDDDDPWI 279
Query: 229 RATDFTPSCCIGQSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGKFTLDRGSTYSSNPNL- 288
R TD TPS IG+ I + + D+ Y +E + +D G + L
Sbjct: 280 RTTDITPSGAIGRCG--VYRISFSARFWPKMDRALDYMRE-RRVAIVDCGGGWGPRRGLT 339
Query: 289 ----VPIVRPPRNI--------SLPYAILFKINLLVQNGCLPGPALDISFYQMVDPQRNN 348
+ P +++ L + +LF +N LV G + L F+ ++ N
Sbjct: 340 VRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEEN 399
Query: 349 IGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTP 408
+ AL + K ++ L + ARN P+ + + V R+ +TP
Sbjct: 400 VNVA--ALRDFWGDKFPVFDACGRLKKALNRV--ARN-PKLLCSKVGDDHAEVRRLVITP 459
Query: 409 CRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLED----- 468
R Y PEV SNRVLR Y E D FLRV+F+DE + L + L+ + ++D
Sbjct: 460 TRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNF 519
Query: 469 --GKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMG 528
KT ++KR+ +L +G + +K+ FLA+SS+QLR+ SAW FA T IRKWMG
Sbjct: 520 FQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMG 579
Query: 529 DFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSDGIGKISAS 588
F S +NVAK+AAR+GQ F S+ T+++ EV+ D V ++ Y+FSDGIGKI+
Sbjct: 580 RFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSDGIGKITPD 639
Query: 589 FARKVAQKCGIR-HTPSAFQIRYAGFKGVISV--DPTSSVKLSLRNSMLKYESTDTKLDV 648
A +VA++ + + PSA+QIR+AGFKGVI+V +L LR SM K+ES L+V
Sbjct: 640 LALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEV 699
Query: 649 LLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALELMSPG 708
+ W+K P +LNRQ+I LLS+L V D +F + Q+ ++ L+ I +D A + L S
Sbjct: 700 VSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVL-TTSCA 759
Query: 709 EITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGN 768
+ N M+S G+ P +EP L MLL R ++L +L K+RIF+P GR +MGCLDE G
Sbjct: 760 DDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGV 819
Query: 769 LEYGEVFVQCTA---HQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLTAV 828
LE G+ F++ T + F N I GTV +AKNPCLHPGDVR+L AV
Sbjct: 820 LEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVI-LGTVVIAKNPCLHPGDVRILEAV 879
Query: 829 DVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP--QQVEPMDYTPV 888
DVP LHH+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD LIPP + PMDY+P
Sbjct: 880 DVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPP 939
Query: 889 PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA 948
+K L V+ ++ ++F M++++LG I NAH AD AM + CI LA+L + A
Sbjct: 940 EAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATA 999
Query: 949 VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR 1008
VDFPKTG A++P +L+ + YPDFM K D +Y+SE +LG+L+R + E +
Sbjct: 1000 VDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVC 1059
Query: 1009 DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISG--GSLSRS 1068
YD D+EV G ++L A K +YD +L L++ YR++ EAEL++G L ++
Sbjct: 1060 TPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKN 1119
Query: 1069 LSATKKNEAESIATAVRSLRKEARSWF----NENAELHFRHGNNVY-ARASAWYFVTYHH 1104
S + + + + TA +LRKE +S F ++ E+ N +Y +ASAWY VTYH
Sbjct: 1120 SSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHP 1179
BLAST of MC09g1024 vs. NCBI nr
Match:
XP_022146790.1 (RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146792.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146793.1 RNA-dependent RNA polymerase 1-like [Momordica charantia])
HSP 1 Score: 2272 bits (5887), Expect = 0.0
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK
Sbjct: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL
Sbjct: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI
Sbjct: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD
Sbjct: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA
Sbjct: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS
Sbjct: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD 540
AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD
Sbjct: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD 540
Query: 541 GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD 600
GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD
Sbjct: 541 GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD 600
Query: 601 TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE 660
TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE
Sbjct: 601 TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE 660
Query: 661 LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL 720
LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL
Sbjct: 661 LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL 720
Query: 721 DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT 780
DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT
Sbjct: 721 DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT 780
Query: 781 AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 840
AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV
Sbjct: 781 AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 840
Query: 841 PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA 900
PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA
Sbjct: 841 PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA 900
Query: 901 VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR 960
VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR
Sbjct: 901 VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR 960
Query: 961 DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS 1020
DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS
Sbjct: 961 DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS 1020
Query: 1021 ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD 1080
ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD
Sbjct: 1021 ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD 1080
Query: 1081 EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1115
EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR
Sbjct: 1081 EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1115
BLAST of MC09g1024 vs. NCBI nr
Match:
XP_038877934.1 (RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877937.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877938.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida])
HSP 1 Score: 1921 bits (4976), Expect = 0.0
Identity = 938/1114 (84.20%), Postives = 1019/1114 (91.47%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVER TG GTIDAI TKRS GRG+R+ A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVERFTGKGTIDAINTKRSKGRGRRMYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A L+YG+SYLKA+EWK DILP+P VFEYNFKGLRLHLGCQISKESF +L TE
Sbjct: 61 SIISKATEGLFYGTSYLKAREWKHDILPDPPVFEYNFKGLRLHLGCQISKESFSMLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSVDFGF++R L FFIS+ HVDYMLVLRYEN+WQV+LHKPQGQS VDYLLIQLFGAPRI
Sbjct: 121 NVSVDFGFEQRKLYFFISYPHVDYMLVLRYENIWQVELHKPQGQS-VDYLLIQLFGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER++ S G I+ DPF+NFS E+DT+WFRATDFTPSCCIGQS+ +CLEIPYGRQLPN HD
Sbjct: 181 YERDAISLGHIIGDPFLNFSMEVDTQWFRATDFTPSCCIGQSAAICLEIPYGRQLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKE GKF+L GSTYSSN NLVP+VRPP I+LPYAILFKINLLVQ GCLPGPA
Sbjct: 241 KFA-YFKEFNGKFSLVSGSTYSSNVNLVPVVRPPLTINLPYAILFKINLLVQQGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDI+FYQMVDP+ NI FIDHAL KL HLKECCYNPSKWLD+EYRKYFK++NPPQPPI+S
Sbjct: 301 LDINFYQMVDPRIYNIAFIDHALKKLLHLKECCYNPSKWLDEEYRKYFKSKNPPQPPILS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLRRYP+YLDNFLRVSFVDEELDK+YSTEL
Sbjct: 361 LSEGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRRYPDYLDNFLRVSFVDEELDKMYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPR SSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLREN+AWMFAP+DG+TA
Sbjct: 421 SPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPRDGLTA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDG-VKYVFS 540
A IR+WMGDF IRNVAKYAARLGQSFGSSTETLSV RREV +IPDIEVES G V YVFS
Sbjct: 481 ARIRRWMGDFHCIRNVAKYAARLGQSFGSSTETLSVSRREVNLIPDIEVESGGGVNYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKIS SFA+KVA+KCGIRH PSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST
Sbjct: 541 DGIGKISVSFAKKVAKKCGIRHMPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+EL+D+LDTIF+D MKAQ+AL
Sbjct: 601 DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQRELIDELDTIFSDPMKAQRAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE T +LKEM+ CGYRPDSEPFL MML TFR+SKLLELRRKSRIFIPNGRAM+GC
Sbjct: 661 ELMSPGENTKILKEMMLCGYRPDSEPFLWMMLHTFRESKLLELRRKSRIFIPNGRAMLGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDET NLEYGEVFVQC+AHQQL+DDHIIFKR KSNRHFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETRNLEYGEVFVQCSAHQQLRDDHIIFKRRKSNRHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPP QVEPMDYTP
Sbjct: 781 TAVDVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPLQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EP+KAMS PCIELAKLFSI
Sbjct: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPEKAMSNPCIELAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKI-DIRSF 960
AVDFPKTG+PALIPANLRV+EYPDFMDKADKVTY+S+NVLGKLFRMLD I P I +IRSF
Sbjct: 901 AVDFPKTGIPALIPANLRVQEYPDFMDKADKVTYESKNVLGKLFRMLDNIGPNIKNIRSF 960
Query: 961 --TRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLS 1020
T DVAR+AYDPDMEVEGFEEYLDDAIYHK NYDMRLGNLM+YY+IK EAELISGGSL+
Sbjct: 961 AYTPDVAREAYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYYKIKTEAELISGGSLT 1020
Query: 1021 RSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYW 1080
SLS TKKNEAESI AV+SLRKEAR WFNENA+LH+ H NVYARASAWYFVTYHH+YW
Sbjct: 1021 SSLSFTKKNEAESITMAVKSLRKEARGWFNENADLHYGHDTNVYARASAWYFVTYHHTYW 1080
Query: 1081 GWFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
GW D K+HGH +SFPWC+YDKL+RIK +K ++R
Sbjct: 1081 GWSDGRKNHGHFLSFPWCIYDKLIRIKNRKTNSR 1112
BLAST of MC09g1024 vs. NCBI nr
Match:
XP_023539816.1 (RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1903 bits (4929), Expect = 0.0
Identity = 936/1113 (84.10%), Postives = 1009/1113 (90.66%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA+EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSV+F F+RR L FFISHSH DYMLVLRYEN+WQV+LHKP GQS +DYLLIQL GAPRI
Sbjct: 121 NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQS-IDYLLIQLVGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER+++ FG I +DPF++FSKE+DT+WFRATDFTPSCCIGQS LCLEIPYGR LPN HD
Sbjct: 181 YERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKEIKGKFTL GSTYSSN NLVP+VRPP +I LPYAILFKINLLVQ GCLPGPA
Sbjct: 241 KFA-YFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL +EYRKY K NPPQPP +S
Sbjct: 301 LDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLREN+ WMFAP+DGITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESD-GVKYVFS 540
A IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RREVEVIPDIEV+SD G+ YVFS
Sbjct: 481 AKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYEST
Sbjct: 541 DGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQKEL+DQLDTIF D +KAQQAL
Sbjct: 601 DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE TN+LKE+ISCGYRPDSEPFLSMML TFR+SKLLELRRKSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
V S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD P+KAMS+PCI+LAKLFSI
Sbjct: 841 VLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRS-- 960
AVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD+IEP+I I+S
Sbjct: 901 AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVK 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FTR++ARQAYDPDMEV+GFEEYLDDA+YHK NYDMRLGNLM YY+IK EAELISG SL++
Sbjct: 961 FTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTK 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TKKNEAESI AV+SLRKEAR WFNENA LHF H NN YARASAWYFVTYH+SYWG
Sbjct: 1021 SSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
W+ E K+ H +SFPWCVYDKL+RIKK+KI AR
Sbjct: 1081 WYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MC09g1024 vs. NCBI nr
Match:
KAG6599932.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 1902 bits (4927), Expect = 0.0
Identity = 936/1113 (84.10%), Postives = 1009/1113 (90.66%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA+EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSV+F F+RR L FFISH VDYMLVLRYEN+WQV+LHKPQGQS +DYLLIQL GAPRI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLIQLVGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER+++ FG I +DPF++FSKE+DTKWFRATDFTPSCCIGQS LCLEIPYGR LPN HD
Sbjct: 181 YERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKEIKGKFTL GSTYSSN NLVP+VRPP +I LPYAILFKINLLVQ GCLPGP+
Sbjct: 241 KFA-YFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPS 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL +EYRKY K RNPPQPP +S
Sbjct: 301 LDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLRNPPQPPNLS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLREN+ WMFAP++GITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRNGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESD-GVKYVFS 540
A IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RREVEVIPDIEV+SD G+ YVFS
Sbjct: 481 AKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYEST
Sbjct: 541 DGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQKEL+DQLDTIF D +KAQQAL
Sbjct: 601 DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKLLELRRKSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTNILKEIISCGYRPDSEPFLYMMLYTFRESKLLELRRKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
V S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD P+KAMS+PCI+LAKLFSI
Sbjct: 841 VLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRS-- 960
AVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD+IEP+I I+S
Sbjct: 901 AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVK 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FTR++ARQAYDPDMEVEGFEEYLDDA+YHK NYDMRLGNLM YY+IK EAELISG SL++
Sbjct: 961 FTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTK 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TKKNEAESI AV+SLRKEAR WFNENA LHF H NN YARASAWYFVTYH+SYWG
Sbjct: 1021 SSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
W+ E K+ H +SFPWCVYDKL+RIKK+KI AR
Sbjct: 1081 WYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MC09g1024 vs. NCBI nr
Match:
XP_022943176.1 (RNA-dependent RNA polymerase 1-like [Cucurbita moschata])
HSP 1 Score: 1900 bits (4921), Expect = 0.0
Identity = 934/1113 (83.92%), Postives = 1008/1113 (90.57%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA+EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSV+F F+RR L FFISH VDYMLVLRYEN+WQV+LHKPQGQS +DYLLIQL GAPRI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLIQLVGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER+++ FG I +DPF++FSKE+DTKWFRATDFTPSCCIGQS LCLEIPYGR LPN HD
Sbjct: 181 YERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YF EIKGKFTL GSTYSSN NLVP+VRPP +I LPYAILFKINLLVQ GCLPGP+
Sbjct: 241 KFA-YFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPS 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL +EYRKY K NPPQPP +S
Sbjct: 301 LDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLREN+ WMFAP+DGITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESD-GVKYVFS 540
A IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RREV+VIPDIEV+SD G+ YVFS
Sbjct: 481 AKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYEST
Sbjct: 541 DGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQKEL+DQLDTIF D +KAQQAL
Sbjct: 601 DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKLLELRRKSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
VPS+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD P+KAMS+PCI+LAKLFSI
Sbjct: 841 VPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRS-- 960
AVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD+IEP+I I+S
Sbjct: 901 AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVK 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FTR++ARQAYDPDMEV+GFEEYLDDA+YHK NYDMRLGNLM YY+IK EAELISG SL++
Sbjct: 961 FTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTK 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TKKNEAESI AV+SLRKEAR WFNENA LHF H NN YARASAWYFVTYH+SYWG
Sbjct: 1021 SSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
W+ E K+ H +SFPWCVYDKL+RIKK+KI AR
Sbjct: 1081 WYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MC09g1024 vs. ExPASy TrEMBL
Match:
A0A6J1D0F4 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3 SV=1)
HSP 1 Score: 2272 bits (5887), Expect = 0.0
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK
Sbjct: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL
Sbjct: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI
Sbjct: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD
Sbjct: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA
Sbjct: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS
Sbjct: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD 540
AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD
Sbjct: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSD 540
Query: 541 GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD 600
GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD
Sbjct: 541 GIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTD 600
Query: 601 TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE 660
TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE
Sbjct: 601 TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE 660
Query: 661 LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL 720
LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL
Sbjct: 661 LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL 720
Query: 721 DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT 780
DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT
Sbjct: 721 DETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLT 780
Query: 781 AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 840
AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV
Sbjct: 781 AVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 840
Query: 841 PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA 900
PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA
Sbjct: 841 PSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIA 900
Query: 901 VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR 960
VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR
Sbjct: 901 VDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRSFTR 960
Query: 961 DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS 1020
DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS
Sbjct: 961 DVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLS 1020
Query: 1021 ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD 1080
ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD
Sbjct: 1021 ATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFD 1080
Query: 1081 EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1115
EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR
Sbjct: 1081 EGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1115
BLAST of MC09g1024 vs. ExPASy TrEMBL
Match:
A0A6J1FR02 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 SV=1)
HSP 1 Score: 1900 bits (4921), Expect = 0.0
Identity = 934/1113 (83.92%), Postives = 1008/1113 (90.57%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA+EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSV+F F+RR L FFISH VDYMLVLRYEN+WQV+LHKPQGQS +DYLLIQL GAPRI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLIQLVGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER+++ FG I +DPF++FSKE+DTKWFRATDFTPSCCIGQS LCLEIPYGR LPN HD
Sbjct: 181 YERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YF EIKGKFTL GSTYSSN NLVP+VRPP +I LPYAILFKINLLVQ GCLPGP+
Sbjct: 241 KFA-YFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPS 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL +EYRKY K NPPQPP +S
Sbjct: 301 LDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL
Sbjct: 361 LDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLREN+ WMFAP+DGITA
Sbjct: 421 SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESD-GVKYVFS 540
A IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RREV+VIPDIEV+SD G+ YVFS
Sbjct: 481 AKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYEST
Sbjct: 541 DGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQKEL+DQLDTIF D +KAQQAL
Sbjct: 601 DTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKLLELRRKSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
VPS+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD P+KAMS+PCI+LAKLFSI
Sbjct: 841 VPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRS-- 960
AVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVLGKLFRMLD+IEP+I I+S
Sbjct: 901 AVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVK 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FTR++ARQAYDPDMEV+GFEEYLDDA+YHK NYDMRLGNLM YY+IK EAELISG SL++
Sbjct: 961 FTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTK 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TKKNEAESI AV+SLRKEAR WFNENA LHF H NN YARASAWYFVTYH+SYWG
Sbjct: 1021 SSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
W+ E K+ H +SFPWCVYDKL+RIKK+KI AR
Sbjct: 1081 WYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MC09g1024 vs. ExPASy TrEMBL
Match:
E9NWK7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=1)
HSP 1 Score: 1893 bits (4903), Expect = 0.0
Identity = 932/1114 (83.66%), Postives = 1009/1114 (90.57%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVE ITG+GTIDAI TKRS G G+RV A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A RL YG+SYLKA+E K DILP+PLVF+YNFK LRLHLGCQISKESF VL TE
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSVDFGF+ R L FFIS+ VDYMLVLRYEN+WQV+LHKP GQS VDYLLIQLFGAPRI
Sbjct: 121 NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS-VDYLLIQLFGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER++ SFG I +DPF+NFS EIDT+WFRATDFTPSC IGQS+ LCLEIPYGRQLPN HD
Sbjct: 181 YERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKEIKGKFTL GSTYSSN NLVP+V PPR I+LPY ILFKINLLVQ GCLPGPA
Sbjct: 241 KFA-YFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFYQMVD Q N IDHAL KL HLKECCYNPSKWLD+EYRKYFK +NPPQPPI++
Sbjct: 301 LDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILT 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
LNEGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTEL
Sbjct: 361 LNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPR SSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLREN+AWMFAPK+ +TA
Sbjct: 421 SPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVES-DGVKYVFS 540
A IR+WMGDF +IRNVAKYAARLGQSFGSSTETLSV RREV+VIPDIEVES GV YVFS
Sbjct: 481 AKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST
Sbjct: 541 DGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+EL+D+LDTIF+D +KAQQAL
Sbjct: 601 DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE T +LKEM+ CGY+PDSEPFL MML TFR+SKL+ELR KSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDET NLEYGEVFVQC+AHQQL DD +IFKR KSNRHFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHM+DCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
VPS++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EPKKAMS PCI+LAKLFSI
Sbjct: 841 VPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKI-DIRSF 960
AVDFPKTGVPALIPANLRV+EYPDFMDKADKVTY+SENVLGKLFRMLD I P I +IRSF
Sbjct: 901 AVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSF 960
Query: 961 --TRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLS 1020
T ++ARQ YDPDMEVEGFEEYLDDAIYHK NYDMRLGNLM+Y++IK EAELISGGSL+
Sbjct: 961 NYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLT 1020
Query: 1021 RSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYW 1080
SLS T KNEAESI AV+SLRKEAR WFNE A+LH+ H NVYARASAWYFVTYHH+YW
Sbjct: 1021 SSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYW 1080
Query: 1081 GWFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
GW D K+HGH +SFPWCVYDKL+RIK +KI+ R
Sbjct: 1081 GWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
BLAST of MC09g1024 vs. ExPASy TrEMBL
Match:
A0A6J1K2Q9 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV=1)
HSP 1 Score: 1885 bits (4882), Expect = 0.0
Identity = 931/1113 (83.65%), Postives = 1003/1113 (90.12%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+S LKA+EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL TE
Sbjct: 61 LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSV+F F+RR L FFISH VDYMLVLRYEN+WQV+LHKP GQS +DYLLIQL GAPRI
Sbjct: 121 NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQS-IDYLLIQLVGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER+++ FG I +DPF++FSKE+DT+WFRATDFTPSCCIGQS LCLEIPYGRQLPN HD
Sbjct: 181 YERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKEIKGKFTL GSTYSSN NLVP+VRPP +I LPYAILFKINLLVQ GCLPGPA
Sbjct: 241 KFA-YFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL +EYRKY K NPPQPP +S
Sbjct: 301 LDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLS 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
L+EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELD+LYSTEL
Sbjct: 361 LDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPRESSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLREN+ WMFAP+DGITA
Sbjct: 421 SPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESD-GVKYVFS 540
A IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RREVEVIPDIEVESD G+ YVFS
Sbjct: 481 AKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISVDPTS VKLSLRNSMLKYEST
Sbjct: 541 DGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
D KLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQKEL+DQLDTIF + +KAQQAL
Sbjct: 601 DMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKLLELRRKSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVP+LHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIP QQVEPMDYTP
Sbjct: 781 TAVDVPALHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPHQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
V S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD P+KAMS+PCI+LAKLFSI
Sbjct: 841 VLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSEPCIKLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKIDIRS-- 960
AVDFPKTGVPALI A+LRV+ YPDFMDK DK Y+S NVLGKLFRMLD+IEP+I I+S
Sbjct: 901 AVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDDIEPRISIKSVK 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FTR++ARQAYDPDMEVEGFEEYLDDA+YHK NYDMRLGNLM YY+IK EAELISG SL++
Sbjct: 961 FTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTK 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TKKNEAESI AV+SLRKEAR WFNENA LHF H NN YARASAWYFVTYH+SYWG
Sbjct: 1021 SSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
WF E K+ H +SFPWCVYDKL+RIKK+KI R
Sbjct: 1081 WFGE-KNESHFLSFPWCVYDKLIRIKKRKIGPR 1110
BLAST of MC09g1024 vs. ExPASy TrEMBL
Match:
H3K3Y9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1883 bits (4878), Expect = 0.0
Identity = 929/1114 (83.39%), Postives = 1005/1114 (90.22%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVE ITG+GTIDAI TKRS G G+RV A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A RL YG+SYLKA+E K DILP+PLVF+YNFK LRLHLGCQISKESF VL TE
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
NVSVDFGFD R L FFIS+ VDYMLVLRYEN+WQV+LHKP GQS VDYLLIQLFGAPRI
Sbjct: 121 NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS-VDYLLIQLFGAPRI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
YER++ SFG I +DPF+NFS EIDT+WFRATDFTPSC IGQS+ LCLEI YGRQLPN HD
Sbjct: 181 YERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHD 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPA 300
KFA YFKEIKGKFTL GSTYSSN NLVP+V PPR I+LPY ILFKINLLVQ GCLPGPA
Sbjct: 241 KFA-YFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPA 300
Query: 301 LDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMS 360
LDISFYQMVD Q N IDHAL KL HLKECCYNPSKWLD+EYRKYFK +NPPQPPI++
Sbjct: 301 LDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILT 360
Query: 361 LNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTEL 420
LNEGLVYVHRVQVTPC+VYFCGPEVN+SNRVLRRYP+Y+DNFLRVSFVDEEL K+YSTEL
Sbjct: 361 LNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTEL 420
Query: 421 SPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITA 480
SPR SSSLEDGKTKI KRILSVLRDGITIGDKKFEFLAYSSSQLREN+AWMFAPK+ +TA
Sbjct: 421 SPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTA 480
Query: 481 AGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVES-DGVKYVFS 540
A IR+WMGDF +IRNVAKYAARLGQ FGSSTETLSV RREV+VIPDIEVES GV YVFS
Sbjct: 481 AKIRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFS 540
Query: 541 DGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
DGIGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST
Sbjct: 541 DGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYEST 600
Query: 601 DTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQAL 660
DTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+EL+D+LDTIF+D +KAQQAL
Sbjct: 601 DTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQAL 660
Query: 661 ELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGC 720
ELMSPGE T +LKEM+ CGY+PDSEPFL MML TFR+SKL+ELR KSRIFIPNGRAMMGC
Sbjct: 661 ELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGC 720
Query: 721 LDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVL 780
LDET NLEYGEVF QC+AHQQL DD +IFKR KSNRHFI TGTV VAKNPCLHPGDVRVL
Sbjct: 721 LDETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVL 780
Query: 781 TAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
TAVDVPSLHHM+DCVVFPQKG RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP
Sbjct: 781 TAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTP 840
Query: 841 VPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSI 900
VPS++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EPKKAMS PCI+LAKLFSI
Sbjct: 841 VPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSI 900
Query: 901 AVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPKI-DIRSF 960
AVDFPKTGVPALIPANLRV+EYPDFMDKADKVTY+SENVLGKLFRMLD I P I +IRSF
Sbjct: 901 AVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSF 960
Query: 961 --TRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLS 1020
T ++ARQ YDPDMEVEGFEEYLDDAIYHK NYDMRLGNLM+Y++IK EAELISGGSL+
Sbjct: 961 NYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLT 1020
Query: 1021 RSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYW 1080
SLS T KNEAESI AV+SLRKEAR WFNE A+LH+ H NVYARASAWYFVTYHH+YW
Sbjct: 1021 SSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYW 1080
Query: 1081 GWFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
GW D K+HGH +SFPWCVYDKL+RIK +KI+ R
Sbjct: 1081 GWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
BLAST of MC09g1024 vs. TAIR 10
Match:
AT1G14790.1 (RNA-dependent RNA polymerase 1 )
HSP 1 Score: 1365.1 bits (3532), Expect = 0.0e+00
Identity = 685/1113 (61.55%), Postives = 834/1113 (74.93%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQ++GFP GV EEVK+F+ER+TGSGT+ AIK ++ G RV A +QFT++ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII A RLYYG SYLKA E +QDI+P P + GL++ GCQ+S + F L +
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRI 180
+V V FG R L F S DY L L YEN+WQ+ LH PQG+S +L+IQ+ GAP+I
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSS-KFLVIQVIGAPKI 180
Query: 181 YERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHD 240
+E+ + +L +S D +W R TDFT S CIGQS+ CLE+P +P+ +
Sbjct: 181 FEKEDQPIN-LLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 KFAHYFKEIKGKFTLDRGSTYSSNPN-LVPIVRPPRNISLPYAILFKINLLVQNGCLPGP 300
FA+Y + F ++ GS+YSSN N LVP+V PP SLP+ ILFK+N LVQN CL GP
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 ALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIM 360
ALD+ FY++++ ++ + IDH L KL+HL ECCY P+ WL DEY+K+ P P +
Sbjct: 301 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTI 360
Query: 361 SLNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTE 420
SL++GLVY++RVQVTP RVYF GPEVNVSNRVLR Y +Y++NFLRVSFVDE+L+K+ S +
Sbjct: 361 SLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMD 420
Query: 421 LSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGIT 480
LSPR S+ +TK++ RI SVLRDGI IGDKKFEFLA+SSSQLRENSAWMFAP D IT
Sbjct: 421 LSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRIT 480
Query: 481 AAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFS 540
AA IR WMGDF IRNVAKYAARLGQSF SS ETL+V E+EVIPD+E+ S G +YVFS
Sbjct: 481 AAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFS 540
Query: 541 DGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYES 600
DGIGKISA FARKVA+KCG+ +PSAFQIRY G+KGV++VDP SS KLSLR SM K+ES
Sbjct: 541 DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 600
Query: 601 TDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQA 660
+TKLDVL WSK PCY+NRQLITLLSTLGV D VFEKKQ+E++D+LD I T ++A +A
Sbjct: 601 ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 660
Query: 661 LELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMG 720
L LM+PGE TN+LK +I CGY+PD+EPFLSMML FR SKLLELR K+RIFI GR+MMG
Sbjct: 661 LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 720
Query: 721 CLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRV 780
CLDET LEYG+V VQ + + R FI TG V VAKNPCLHPGDVRV
Sbjct: 721 CLDETRTLEYGQVVVQYSDPM------------RPGRRFIITGPVVVAKNPCLHPGDVRV 780
Query: 781 LTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
L AV+VP+L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L+PP+ EPMDYT
Sbjct: 781 LQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYT 840
Query: 841 PVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFS 900
P P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD+EP KA S PCIELAK FS
Sbjct: 841 PEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFS 900
Query: 901 IAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDE-IEPKIDIRS 960
AVDFPKTGV A+IP +L V+EYPDFM+K DK TY+S+NV+GKLFR + E P I I+S
Sbjct: 901 TAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 960
Query: 961 FTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSR 1020
FT DVA ++YD DMEV+GFEEY+D+A Y K NYD +LGNLM+YY IK EAE++SGG +
Sbjct: 961 FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRM 1020
Query: 1021 SLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVYARASAWYFVTYHHSYWG 1080
S S TK+ +AESI AVR+LRKE S FN + E N A+ASAWY VTYH SYWG
Sbjct: 1021 SKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSYWG 1080
Query: 1081 WFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1111
++EG + H +SF WCVYDKLVRIKK + R
Sbjct: 1081 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091
BLAST of MC09g1024 vs. TAIR 10
Match:
AT4G11130.1 (RNA-dependent RNA polymerase 2 )
HSP 1 Score: 746.9 bits (1927), Expect = 2.4e-215
Identity = 432/1132 (38.16%), Postives = 654/1132 (57.77%), Query Frame = 0
Query: 4 TIQLYGFPTGVVQEEVKEFVERITGSGTIDA--IKTKRSNGRGKRVCATIQFTNDE-GAK 63
T+++ P +V +E+ F+E G T+ A I T R N + R A +QFT E ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWK-PRDFARVQFTTLEVKSR 70
Query: 64 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKES-FFVLQTE 123
+ + +L + + L+ E DI+P P+ + L +G S E F L+
Sbjct: 71 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130
Query: 124 LNVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQ-SDVDYLLIQLFGAP 183
V ++R + F++ S Y + +R+E++ + G S++D L++L P
Sbjct: 131 DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGP 190
Query: 184 RIYERNSESFGPILDDPFINFSKE-IDTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPN 243
++++R + F KE D W R TDF+ S IG S+ CLE+ G + +
Sbjct: 191 KVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLD 250
Query: 244 LHDKFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPP-RNISLPYAILFKINLLVQNGCL 303
+ Y++E T G T++S +VP++ + PY ILF++N LV +
Sbjct: 251 IFSGLP-YYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 310
Query: 304 P-GPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYF-KARNPP 363
A D+ +++ + L KL+ CY+P ++ + + K ++ P
Sbjct: 311 SLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSP 370
Query: 364 QPPIMSLNE-GLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELD 423
L E ++ R VTP ++Y GPE+ +N V++ + E++ +F+RV+FV+E+
Sbjct: 371 ASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWS 430
Query: 424 KLYSTELS--PRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWM 483
KL + LS +E ++ +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR NS WM
Sbjct: 431 KLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWM 490
Query: 484 FAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVES 543
FA + + A IR+WMG FR IR+++K AAR+GQ F +S +TL V ++VE IPDIEV +
Sbjct: 491 FASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT 550
Query: 544 DGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRN 603
DG Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY G+KGVI+VD +S KLSLR+
Sbjct: 551 DGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRD 610
Query: 604 SMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTD 663
SMLK++S + L+V W++S+PC+LNR++I LLSTLG+ED +FE Q + L + D
Sbjct: 611 SMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLED 670
Query: 664 SMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIP 723
A L+ +S N+L +M+ GY P SEP+LSMML +S+L EL+ + RI +P
Sbjct: 671 RDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVP 730
Query: 724 NGRAMMGCLDETGNLEYGEVFVQCT-AHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPC 783
GR ++GC+DE G LEYG+V+V+ T +L+ + R + G V V KNPC
Sbjct: 731 KGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPC 790
Query: 784 LHPGDVRVLTAVDVPSLHH--MVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIP 843
LHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD +IP
Sbjct: 791 LHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIP 850
Query: 844 PQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSK 903
+ PMDY +L+DHDVT+EE+ ++F +YM++D+LG+I+ AH ADR+P+KA S+
Sbjct: 851 SEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQ 910
Query: 904 PCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDE 963
C+ELA L S AVDF KTG PA +P L+ E+PDF+++ +K TY SE+V GKL+R +
Sbjct: 911 KCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS 970
Query: 964 IEPKIDIRSFTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNEAE 1023
+ + + D AYD +E GFE +++ A H+ Y +L +LM YY NE E
Sbjct: 971 SLAQRKPEAESEDTV--AYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEE 1030
Query: 1024 LISGGSLSRSLSATKKNE-----AESIATAVRSLRKEARSWFNENAELHFRHGNNVYARA 1083
+++G ++ + + N + I +V+ L KEA WF ++ E A
Sbjct: 1031 ILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DEQQKKKLA 1090
Query: 1084 SAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVRIKKQKISARNARRR 1116
SAWY+VTY+ ++ + +SFPW V D L+ IK A NA+R+
Sbjct: 1091 SAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK-----AENAQRQ 1121
BLAST of MC09g1024 vs. TAIR 10
Match:
AT3G49500.1 (RNA-dependent RNA polymerase 6 )
HSP 1 Score: 570.1 bits (1468), Expect = 3.9e-162
Identity = 386/1069 (36.11%), Postives = 565/1069 (52.85%), Query Frame = 0
Query: 95 YNFKGLRLHLGCQISKESFFV---------LQTELNVSVDFGFDRRVLSFF---ISHS-- 154
Y G+ L +G +S++ FFV L + + F F + F + H+
Sbjct: 130 YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189
Query: 155 HVDYMLVLRYENVWQVQLHKPQGQSDVDYLLIQLFGAPRIYERNSESF------GPILDD 214
+ DY L L ++ V+ +K L++QL +PR++ R ++ G +LDD
Sbjct: 190 NCDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLDD 249
Query: 215 PFINFSKEIDTKWFRATDFTPSCCIGQ--SSGLCLEIPYGRQLPNLHDKF-AHYFKEIKG 274
D W R TDFT IG+ S + + Y +L D F +E +
Sbjct: 250 ---------DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERV 309
Query: 275 KF-TLDRGSTYSSNPNLVPIVRPPRNISLPYAILFKINLLVQNGCLPGPALDISFYQMVD 334
++ R P + + I+F +N ++ G L F+ ++
Sbjct: 310 RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLR 369
Query: 335 PQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKY-----FKARNPPQPPIMSLNEGL 394
Q ++ + L HL C Y + + D Y++ + +NP +E +
Sbjct: 370 NQPKDVN-----IASLKHL--CTY--KRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDI 429
Query: 395 VYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELS---- 454
+ R+ +TP R Y PEV +SNRVLRRY + FLRV+F+DE + + S LS
Sbjct: 430 SEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVA 489
Query: 455 ---PRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGI 514
+SS KT +FKR+ S+L DG + +K+ FLA+S++QLR+ SAW FA
Sbjct: 490 PIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKT 549
Query: 515 TAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEV-IPDIEVESDGVKYV 574
+ I+ WMG F+ +NVAK AAR+G F S+ T+ V EV+ +PDIE YV
Sbjct: 550 RVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YV 609
Query: 575 FSDGIGKISASFARKVAQ--KCGIRHTPSAFQIRYAGFKGVISVDPTSS--VKLSLRNSM 634
FSDGIG I+ A +V + K + ++P A+QIRYAGFKGV++ P+ S ++L+LR+SM
Sbjct: 610 FSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSM 669
Query: 635 LKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSM 694
K+ S T L++ W++ P +LNRQ+ITLLS LGV D +F Q+ ++ +L+ I D+
Sbjct: 670 KKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTD 729
Query: 695 KAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNG 754
A + L S E N M+S G++P +EP L ML + R ++L LR KSRIF+ +G
Sbjct: 730 VAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSG 789
Query: 755 RAMMGCLDETGNLEYGEVFVQC---TAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPC 814
R +MGCLDE G LE+G+ F+Q + FK K++ + G VA+AKNPC
Sbjct: 790 RWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKNPC 849
Query: 815 LHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP- 874
LHPGDVR+L AVDVP LHHM DC++FPQKG RPH NE SGSDLDGD+YFV WD LIPP
Sbjct: 850 LHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPN 909
Query: 875 -QQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSK 934
+ M Y K L V +++ ++FA + N+ LG I NAH ADR AM +
Sbjct: 910 RKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDE 969
Query: 935 PCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDE 994
C+ LA+L + AVDFPKTG +P +L+ + YPDFM K D TY+S +LG+L+R + E
Sbjct: 970 ECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKE 1029
Query: 995 I--EPKIDIRSFTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNYYRIKNE 1054
+ E + D + YD +E+ GFE+ + +A HK YD +L L+ Y+++ E
Sbjct: 1030 VYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKE 1089
Query: 1055 AELISGGSLSRSLSATKKNE--AESIATAVRSLRKEARSWFNE----NAELHFRHGNNVY 1104
E+++G S +KK E + + SL+KE R F E + L N +Y
Sbjct: 1090 EEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILY 1149
BLAST of MC09g1024 vs. TAIR 10
Match:
AT2G19910.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 117.5 bits (293), Expect = 7.0e-26
Identity = 121/422 (28.67%), Postives = 188/422 (44.55%), Query Frame = 0
Query: 566 FQIRYAGF--KGVISVDPTSSVK-LSLRNSMLK-YE-------STDTKLDVLLWSK-SLP 625
F+I Y G+ KG + + + +R SM+K YE ST L+V+ S
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514
Query: 626 CYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKE 685
L+R L+ LLS GV + F + +++ TIF A +A + T +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT---AD 574
Query: 686 MISCGYRPDSEPFLSMMLLTFRQSKLLELRRKS----RIFIPNGRAMMGCLDETGNLEYG 745
MI G P EP+L R S LL+ R + R I +MG +D TG L+
Sbjct: 575 MILVGI-PLDEPYLK-----DRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKEN 634
Query: 746 EVFVQCTAHQQLQDDHIIFKRGKSNRHFIATGTVAVAKNPCLHPGDVRVLTAVDVPSLHH 805
E+ V I G+ +G V V +NP LH GD+ VL A V +L
Sbjct: 635 EICV-------------ILHSGQ------ISGDVLVYRNPGLHFGDIHVLKATYVKALED 694
Query: 806 MVD----CVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP-QQVEPMDYTPVPSKL 865
V V FPQKGPR +E +G D DGD+YF+ +P L+ + EP + PSK+
Sbjct: 695 YVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKI 754
Query: 866 --------LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD---------REPKKA 925
L + EE+ + F A + D +G+ A+ D + K
Sbjct: 755 YCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE 814
Query: 926 MSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRM 948
K ++L ++ A+D PK G +P +L ++ +P +M++ K ++S ++LG +F
Sbjct: 815 RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDT 848
BLAST of MC09g1024 vs. TAIR 10
Match:
AT2G19920.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 144/522 (27.59%), Postives = 224/522 (42.91%), Query Frame = 0
Query: 497 AKYAARLGQSFGSSTETLSVGRREVEV--IPDIE---------VESDGVKYVFSDGIGKI 556
A Y AR S T+ L V E+ V I DI ++ +G + SDG G I
Sbjct: 351 ANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYI 410
Query: 557 SASFARKV--------------AQKCGIRHTPSAFQIRY----AGFKGVISVD---PTSS 616
S AR Q ++ P QIR + KG+ ++ P +
Sbjct: 411 SEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQT 470
Query: 617 VKLSLRNSMLK-YE-------STDTKLDVLLWSK-SLPCYLNRQLITLLSTLGVEDHVFE 676
V+ +R SM+K Y+ ST L+V+ S L++ L+ LLS GV + F
Sbjct: 471 VQ--VRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFL 530
Query: 677 KKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFR 736
+++ TIF A +A + N L +MI G P EP+L L
Sbjct: 531 DILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL---- 590
Query: 737 QSKLLELR----RKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRG 796
SKLL+L + ++ I +MG +D TG L+ EV + + QD
Sbjct: 591 -SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEV----SGLAKSQD-------- 650
Query: 797 KSNRHFIATGTVAVAKNPCLHPGDVRVLTAVDVPSLHHMVD----CVVFPQKGPRPHPNE 856
V V +NP LH GD+ +L A V SL V V FPQKGPR +E
Sbjct: 651 -----------VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDE 710
Query: 857 CSGSDLDGDIYFVCWDPDLIPPQQVEPMD-----------YTPVPSKLLDHDVTMEEVQE 916
+G D DGD+YF+ +P L+ + +P + YT L + EE+ +
Sbjct: 711 IAGGDFDGDMYFISRNPKLL--EHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFK 770
Query: 917 YF--ANYMVNDSLGIIANAHTAFADR---------EPKKAMSKPCIELAKLFSIAVDFPK 948
F + + +G A++ A DR + K M K ++L ++ A+D PK
Sbjct: 771 IFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPK 830
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9LQV2 | 0.0e+00 | 61.55 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | [more] |
| Q0DXS3 | 1.1e-265 | 62.52 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| O82504 | 3.3e-214 | 38.16 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | [more] |
| Q7XM31 | 1.2e-211 | 38.48 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q8LHH9 | 2.7e-163 | 35.51 | Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022146790.1 | 0.0 | 100.00 | RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-de... | [more] |
| XP_038877934.1 | 0.0 | 84.20 | RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936... | [more] |
| XP_023539816.1 | 0.0 | 84.10 | RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6599932.1 | 0.0 | 84.10 | RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_022943176.1 | 0.0 | 83.92 | RNA-dependent RNA polymerase 1-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1D0F4 | 0.0 | 100.00 | RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3... | [more] |
| A0A6J1FR02 | 0.0 | 83.92 | RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 ... | [more] |
| E9NWK7 | 0.0 | 83.66 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=... | [more] |
| A0A6J1K2Q9 | 0.0 | 83.65 | RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV... | [more] |
| H3K3Y9 | 0.0 | 83.39 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1 | [more] |
