MC09g1008 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1008
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	adagio protein 3 isoform X1
Location	MC09: 15768176 .. 15768289 (-)
RNA-Seq Expression	MC09g1008
Synteny	MC09g1008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACTTCCTTCGTCGTCTCCGATGCTCTCGAGCCCGATTTTCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATATCGCGCCGATGAGGTCCTCGGTCAGAAT

mRNA sequence

CCAACTTCCTTCGTCGTCTCCGATGCTCTCGAGCCCGATTTTCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATATCGCGCCGATGAGGTCCTCGGTCAGAAT

Coding sequence (CDS)

CCAACTTCCTTCGTCGTCTCCGATGCTCTCGAGCCCGATTTTCCCATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATATCGCGCCGATGAGGTCCTCGGTCAGAAT

Protein sequence

PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN

Homology

[Close]

BLAST of MC09g1008 vs. ExPASy Swiss-Prot
Match: Q9C9W9 (Adagio protein 3 OS=Arabidopsis thaliana OX=3702 GN=ADO3 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-13
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P SF+VSDALEPDFP+IYVN+VFE+FTGYRADEVLG+N
Sbjct: 53 PPSFIVSDALEPDFPLIYVNRVFEVFTGYRADEVLGRN 90

[Close]

BLAST of MC09g1008 vs. ExPASy Swiss-Prot
Match: Q8W420 (Adagio protein 2 OS=Arabidopsis thaliana OX=3702 GN=ADO2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P  FVVSDALEPD PIIYVN VFEI TGYRA+EV+G+N
Sbjct: 44 PCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIGRN 81

[Close]

BLAST of MC09g1008 vs. ExPASy Swiss-Prot
Match: Q94BT6 (Adagio protein 1 OS=Arabidopsis thaliana OX=3702 GN=ADO1 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-09
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P  FVV+DA+EPD PIIYVN VFE+ TGYRA+EVLG N
Sbjct: 44 PCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVLGGN 81

[Close]

BLAST of MC09g1008 vs. ExPASy Swiss-Prot
Match: Q67UX0 (Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150800 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-09
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 5  VVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          VVSDALEPDFPIIYVN+ FE  TGYRA+EVLG+N
Sbjct: 57 VVSDALEPDFPIIYVNRGFEDATGYRAEEVLGRN 90

[Close]

BLAST of MC09g1008 vs. ExPASy Swiss-Prot
Match: Q2R2W1 (Adagio-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0547000 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-08
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 3   SFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
           + VVSDA+E DFP+IYVN  FE  TGYRADEVLG+N
Sbjct: 66  AIVVSDAVEVDFPVIYVNAAFEAATGYRADEVLGRN 101

[Close]

BLAST of MC09g1008 vs. NCBI nr
Match: KAG6599920.1 (Adagio protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 7.95e-18
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEP+FPIIYVNKVFEI+TGYRADEVLGQN
Sbjct: 55 PTSFVVSDALEPEFPIIYVNKVFEIYTGYRADEVLGQN 92

[Close]

BLAST of MC09g1008 vs. NCBI nr
Match: KAG6600850.1 (Adagio protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.66e-17
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEI TGYRADEVLGQN
Sbjct: 55 PTSFVVSDALEPDFPIIYVNKVFEICTGYRADEVLGQN 92

[Close]

BLAST of MC09g1008 vs. NCBI nr
Match: XP_022146836.1 (adagio protein 3 isoform X1 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 7.22e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 59 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 96

[Close]

BLAST of MC09g1008 vs. NCBI nr
Match: XP_004142261.1 (adagio protein 3 [Cucumis sativus] >KGN49597.1 hypothetical protein Csa_018480 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 7.22e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 57 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 94

[Close]

BLAST of MC09g1008 vs. NCBI nr
Match: XP_038892619.1 (adagio protein 3 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 7.22e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 57 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 94

[Close]

BLAST of MC09g1008 vs. ExPASy TrEMBL
Match: A0A6J1D0K4 (adagio protein 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015944 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.50e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 59 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 96

[Close]

BLAST of MC09g1008 vs. ExPASy TrEMBL
Match: A0A5A7UTH4 (Adagio protein 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00480 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.50e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 57 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 94

[Close]

BLAST of MC09g1008 vs. ExPASy TrEMBL
Match: A0A0A0KMI0 (PAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G021300 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.50e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 57 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 94

[Close]

BLAST of MC09g1008 vs. ExPASy TrEMBL
Match: A0A1S3BT57 (adagio protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493451 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.50e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN
Sbjct: 57 PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 94

[Close]

BLAST of MC09g1008 vs. ExPASy TrEMBL
Match: A0A7J8LEG6 (PAS domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_021717 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.38e-17
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 38
          PTSFVVSDALEPDFPIIYVNKVFE+FTGYRADEVLG+N
Sbjct: 59 PTSFVVSDALEPDFPIIYVNKVFEVFTGYRADEVLGRN 96

[Close]

BLAST of MC09g1008 vs. TAIR 10
Match: AT1G68050.1 (flavin-binding, kelch repeat, f box 1 )

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-14
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P SF+VSDALEPDFP+IYVN+VFE+FTGYRADEVLG+N
Sbjct: 53 PPSFIVSDALEPDFPLIYVNRVFEVFTGYRADEVLGRN 90

[Close]

BLAST of MC09g1008 vs. TAIR 10
Match: AT2G18915.2 (LOV KELCH protein 2 )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P  FVVSDALEPD PIIYVN VFEI TGYRA+EV+G+N
Sbjct: 44 PCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIGRN 81

[Close]

BLAST of MC09g1008 vs. TAIR 10
Match: AT2G18915.1 (LOV KELCH protein 2 )

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-11
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLG 37
          P  FVVSDALEPD PIIYVN VFEI TGYRA+EV+G
Sbjct: 44 PCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIG 79

[Close]

BLAST of MC09g1008 vs. TAIR 10
Match: AT5G57360.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P  FVV+DA+EPD PIIYVN VFE+ TGYRA+EVLG N
Sbjct: 44 PCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVLGGN 81

[Close]

BLAST of MC09g1008 vs. TAIR 10
Match: AT5G57360.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  PTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQN 39
          P  FVV+DA+EPD PIIYVN VFE+ TGYRA+EVLG N
Sbjct: 44 PCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVLGGN 81

The following BLAST results are available for this feature:

BLAST of MC09g1008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9W9	1.9e-13	84.21	Adagio protein 3 OS=Arabidopsis thaliana OX=3702 GN=ADO3 PE=1 SV=1	[more]
Q8W420	1.5e-10	78.95	Adagio protein 2 OS=Arabidopsis thaliana OX=3702 GN=ADO2 PE=1 SV=1	[more]
Q94BT6	2.2e-09	73.68	Adagio protein 1 OS=Arabidopsis thaliana OX=3702 GN=ADO1 PE=1 SV=2	[more]
Q67UX0	4.9e-09	82.35	Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g...	[more]
Q2R2W1	2.4e-08	72.22	Adagio-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0547000 P...	[more]

BLAST of MC09g1008 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599920.1	7.95e-18	94.74	Adagio protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6600850.1	1.66e-17	97.37	Adagio protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022146836.1	7.22e-17	100.00	adagio protein 3 isoform X1 [Momordica charantia]	[more]
XP_004142261.1	7.22e-17	100.00	adagio protein 3 [Cucumis sativus] >KGN49597.1 hypothetical protein Csa_018480 [...	[more]
XP_038892619.1	7.22e-17	100.00	adagio protein 3 [Benincasa hispida]	[more]

BLAST of MC09g1008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0K4	3.50e-17	100.00	adagio protein 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015944 PE=3 ...	[more]
A0A5A7UTH4	3.50e-17	100.00	Adagio protein 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KMI0	3.50e-17	100.00	PAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G021300 PE=3 SV...	[more]
A0A1S3BT57	3.50e-17	100.00	adagio protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493451 PE=3 SV=1	[more]
A0A7J8LEG6	8.38e-17	94.74	PAS domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_021717 PE=4...	[more]

BLAST of MC09g1008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68050.1	1.4e-14	84.21	flavin-binding, kelch repeat, f box 1	[more]
AT2G18915.2	1.1e-11	78.95	LOV KELCH protein 2	[more]
AT2G18915.1	9.1e-11	80.56	LOV KELCH protein 2	[more]
AT5G57360.1	1.6e-10	73.68	Galactose oxidase/kelch repeat superfamily protein	[more]
AT5G57360.2	1.6e-10	73.68	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.20	PAS domain	coord: 3..38 e-value: 8.7E-13 score: 50.2
None	No IPR available	PANTHER	PTHR46175:SF2	ADAGIO PROTEIN 3	coord: 1..38
None	No IPR available	PANTHER	PTHR46175	BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR	coord: 1..38
IPR000014	PAS domain	PROSITE	PS50112	PAS	coord: 1..38 score: 10.39313
IPR035965	PAS domain superfamily	SUPERFAMILY	55785	PYP-like sensor domain (PAS domain)	coord: 10..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1008.1	MC09g1008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009637	response to blue light
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0009881	photoreceptor activity