MC09g0874 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0874
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPseudouridylate synthase 7-like protein isoform X1
LocationMC09: 10345270 .. 10345506 (+)
RNA-Seq ExpressionMC09g0874
SyntenyMC09g0874
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACCATGTCTTGAAGCCTTGGGAAGTCATTTTGGGGGATTAGTGAACCATTTTTCCAATACTTTAAATCTGCTCGATTGCTCCGAGGTTTTTATTCACATTAAACCAAATTTATGTGGTTTCCTACCTGCATACCTTAAAATTCAAGATCCCAAACTTGATTCATTCTTCATTCGAGTTTCCGATTGTTGCAAGCCTTCAAAGTTTCAACCATCAATCATTCAAAATAGATCATTT

mRNA sequence

CGACCATGTCTTGAAGCCTTGGGAAGTCATTTTGGGGGATTAGTGAACCATTTTTCCAATACTTTAAATCTGCTCGATTGCTCCGAGGTTTTTATTCACATTAAACCAAATTTATGTGGTTTCCTACCTGCATACCTTAAAATTCAAGATCCCAAACTTGATTCATTCTTCATTCGAGTTTCCGATTGTTGCAAGCCTTCAAAGTTTCAACCATCAATCATTCAAAATAGATCATTT

Coding sequence (CDS)

CGACCATGTCTTGAAGCCTTGGGAAGTCATTTTGGGGGATTAGTGAACCATTTTTCCAATACTTTAAATCTGCTCGATTGCTCCGAGGTTTTTATTCACATTAAACCAAATTTATGTGGTTTCCTACCTGCATACCTTAAAATTCAAGATCCCAAACTTGATTCATTCTTCATTCGAGTTTCCGATTGTTGCAAGCCTTCAAAGTTTCAACCATCAATCATTCAAAATAGATCATTT

Protein sequence

RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRVSDCCKPSKFQPSIIQNRSF
Homology
BLAST of MC09g0874 vs. NCBI nr
Match: KAA0051433.1 (hypothetical protein E6C27_scaffold55G001850 [Cucumis melo var. makuwa] >TYK22220.1 hypothetical protein E5676_scaffold333G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 8.20e-09
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R  LE + +HFGGL +  S TLNL + +E +I +K NLCGF+P  ++I D K  + ++  
Sbjct: 78  RSTLEVIENHFGGLTDRASETLNLTNITEAWIQVKKNLCGFVPPTIEITDLKRKNIYLHF 137

Query: 61  SD 62
            D
Sbjct: 138 GD 139

BLAST of MC09g0874 vs. NCBI nr
Match: KAA0036017.1 (hypothetical protein E6C27_scaffold112G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.41e-08
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R   E +G HFGGL +  S TLNL + SE  I +K  LCGF+P+ ++I + K ++ ++  
Sbjct: 44  RSTFEVIGDHFGGLTDIASETLNLTNISEAQIQVKKKLCGFVPSTIEITNLKRENIYLHF 103

Query: 61  SDC--CKPSKFQPS 72
            D     P+   PS
Sbjct: 104 RDFEFLNPTDIDPS 117

BLAST of MC09g0874 vs. NCBI nr
Match: XP_031738083.1 (uncharacterized protein LOC116402658 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.92e-08
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 1  RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
          R   EA+G HFGG +   + TLNL +CSE  I +K NLCGF+ +  +I D K  + F+  
Sbjct: 31 RSVFEAIGDHFGGFIKIATETLNLTNCSEARIQVKRNLCGFVLSTNEISDHKRGNIFLHF 90

Query: 61 SD 62
           +
Sbjct: 91 GE 92

BLAST of MC09g0874 vs. NCBI nr
Match: TYJ98837.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.24e-07
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R  LE +G HF GL +    TLNL + SE  I +K NLCGF+P+ ++I D K  + ++  
Sbjct: 232 RSTLEVIGDHFRGLTDIAFETLNLTNVSEARIQVKKNLCGFVPSTIEITDLKCRNIYLHF 291

Query: 61  SD 62
            D
Sbjct: 292 GD 293

BLAST of MC09g0874 vs. NCBI nr
Match: KAA0063414.1 (uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK11672.1 uncharacterized protein E5676_scaffold828G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.35e-07
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 5   EALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRVSD 62
           +A+G  FGG  +    T+NL++CSE  I +  NLCGFLPA ++++D   D+ F+   D
Sbjct: 134 KAIGGFFGGFESISLKTMNLINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGD 191

BLAST of MC09g0874 vs. ExPASy TrEMBL
Match: A0A5A7U6A9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001030 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.97e-09
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R  LE + +HFGGL +  S TLNL + +E +I +K NLCGF+P  ++I D K  + ++  
Sbjct: 78  RSTLEVIENHFGGLTDRASETLNLTNITEAWIQVKKNLCGFVPPTIEITDLKRKNIYLHF 137

Query: 61  SD 62
            D
Sbjct: 138 GD 139

BLAST of MC09g0874 vs. ExPASy TrEMBL
Match: A0A5A7T365 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00020 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.65e-08
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R   E +G HFGGL +  S TLNL + SE  I +K  LCGF+P+ ++I + K ++ ++  
Sbjct: 44  RSTFEVIGDHFGGLTDIASETLNLTNISEAQIQVKKKLCGFVPSTIEITNLKRENIYLHF 103

Query: 61  SDC--CKPSKFQPS 72
            D     P+   PS
Sbjct: 104 RDFEFLNPTDIDPS 117

BLAST of MC09g0874 vs. ExPASy TrEMBL
Match: A0A5D3BI91 (Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00280 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.98e-08
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 1   RPCLEALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRV 60
           R  LE +G HF GL +    TLNL + SE  I +K NLCGF+P+ ++I D K  + ++  
Sbjct: 232 RSTLEVIGDHFRGLTDIAFETLNLTNVSEARIQVKKNLCGFVPSTIEITDLKCRNIYLHF 291

Query: 61  SD 62
            D
Sbjct: 292 GD 293

BLAST of MC09g0874 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.54e-08
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 5   EALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRVSD 62
           +A+G  FGG  +    T+NL++CSE  I +  NLCGFLPA ++++D   D+ F+   D
Sbjct: 134 KAIGGFFGGFESISLKTMNLINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGD 191

BLAST of MC09g0874 vs. ExPASy TrEMBL
Match: A0A5D3DFR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00060 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.33e-08
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 5  EALGSHFGGLVNHFSNTLNLLDCSEVFIHIKPNLCGFLPAYLKIQDPKLDSFFIRVSDCC 64
          EA+ +HFGGL N    T+N L+ SE  I +K NLC F+PA ++I D K  + F+   D  
Sbjct: 5  EAIRAHFGGLENIADETINFLNVSEAKIQMKKNLCRFIPATIEITDDKRGNTFLTFGDIS 64

Query: 65 KPSKFQPSIIQNRSF 79
            +  QPS ++   F
Sbjct: 65 SIN--QPSKVRGDLF 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0051433.18.20e-0941.94hypothetical protein E6C27_scaffold55G001850 [Cucumis melo var. makuwa] >TYK2222... [more]
KAA0036017.13.41e-0837.84hypothetical protein E6C27_scaffold112G00020 [Cucumis melo var. makuwa][more]
XP_031738083.13.92e-0841.94uncharacterized protein LOC116402658 [Cucumis sativus][more]
TYJ98837.11.24e-0741.94putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa][more]
KAA0063414.11.35e-0741.38uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
A0A5A7U6A93.97e-0941.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3651.65e-0837.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BI915.98e-0841.94Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa ... [more]
A0A5A7V8786.54e-0841.38DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DFR09.33e-0840.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0874.1MC09g0874.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity