MC09g0864 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0864
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC09: 9944800 .. 9945015 (-)
RNA-Seq Expression	MC09g0864
Synteny	MC09g0864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTCAAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTGCGAAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA

mRNA sequence

ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA

Coding sequence (CDS)

ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA

Protein sequence

IILNLSDVLRQVIDLKPAYQTYEKLDSMFLSNDLNEAYVWEKFLTYQMDSKSLGENVDEFKKMSSEFNNL

Homology

[Close]

BLAST of MC09g0864 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 5.59e-12
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD VLR+VI  +  Y  ++KL+ ++ S DL N AYV E+F T++MD +KSL EN+
Sbjct: 17 IVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRERFFTFKMDGNKSLTENL 76

Query: 61 DEFKKMSSEFNNL 70
           EFKK+SS+F  L
Sbjct: 77 GEFKKLSSDFREL 89

[Close]

BLAST of MC09g0864 vs. NCBI nr
Match: KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 6.37e-12
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD V+R+VID + AY  ++KLD ++ S DL N AYV E+F T++MD + SL EN+
Sbjct: 17 IVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRERFFTFKMDDNNSLIENL 76

Query: 61 DEFKKMSSEF 67
           EFKK+SS+F
Sbjct: 77 GEFKKLSSDF 86

[Close]

BLAST of MC09g0864 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.39e-11
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD VL++VI  +  Y  ++KL+ ++ S DL N AY+ E+FLTY+MD +KSL EN+
Sbjct: 17 IVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENL 76

Query: 61 DEFKKMSSEFNNL 70
           EFKK+S +F  L
Sbjct: 77 GEFKKLSLDFREL 89

[Close]

BLAST of MC09g0864 vs. NCBI nr
Match: XP_038902421.1 (uncharacterized protein LOC120089066 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 3.77e-11
Identity = 35/73 (47.95%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1   IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
           I+LN++D VLRQ++D + A+    KL+ ++L+ DL N+A++ E F TY+MD+ KSL EN+
Sbjct: 63  IVLNITDSVLRQIVDQQTAFDHCNKLNEIYLNKDLPNKAFLREIFFTYRMDAEKSLSENL 122

Query: 61  DEFKKMSSEFNNL 70
           +EFK++SSEF ++
Sbjct: 123 NEFKRLSSEFRSI 135

[Close]

BLAST of MC09g0864 vs. NCBI nr
Match: KAA0060586.1 (putative gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.13e-11
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1   IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
           I+L LSD VL ++ID +  Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52  IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111

Query: 61  DEFKKMSSEFNNL 70
            EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124

[Close]

BLAST of MC09g0864 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.71e-12
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD VLR+VI  +  Y  ++KL+ ++ S DL N AYV E+F T++MD +KSL EN+
Sbjct: 17 IVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRERFFTFKMDGNKSLTENL 76

Query: 61 DEFKKMSSEFNNL 70
           EFKK+SS+F  L
Sbjct: 77 GEFKKLSSDFREL 89

[Close]

BLAST of MC09g0864 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.08e-12
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD V+R+VID + AY  ++KLD ++ S DL N AYV E+F T++MD + SL EN+
Sbjct: 17 IVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRERFFTFKMDDNNSLIENL 76

Query: 61 DEFKKMSSEF 67
           EFKK+SS+F
Sbjct: 77 GEFKKLSSDF 86

[Close]

BLAST of MC09g0864 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.16e-11
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
          I+LNLSD VL++VI  +  Y  ++KL+ ++ S DL N AY+ E+FLTY+MD +KSL EN+
Sbjct: 17 IVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENL 76

Query: 61 DEFKKMSSEFNNL 70
           EFKK+S +F  L
Sbjct: 77 GEFKKLSLDFREL 89

[Close]

BLAST of MC09g0864 vs. ExPASy TrEMBL
Match: A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.00e-11
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1   IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
           I+L LSD VL ++ID +  Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52  IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111

Query: 61  DEFKKMSSEFNNL 70
            EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124

[Close]

BLAST of MC09g0864 vs. ExPASy TrEMBL
Match: A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.39e-10
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1   IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
           I+L LSD VL ++ID +  Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52  IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111

Query: 61  DEFKKMSSEFNNL 70
            EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124

The following BLAST results are available for this feature:

BLAST of MC09g0864 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0864 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063883.1	5.59e-12	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0059755.1	6.37e-12	55.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96960.1	2.39e-11	52.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038902421.1	3.77e-11	47.95	uncharacterized protein LOC120089066 [Benincasa hispida]	[more]
KAA0060586.1	4.13e-11	50.68	putative gag protein [Cucumis melo var. makuwa]	[more]

BLAST of MC09g0864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6Z9	2.71e-12	53.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V1L8	3.08e-12	55.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BAU2	1.16e-11	52.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V269	2.00e-11	50.68	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G...	[more]
A0A5D3BSZ6	1.39e-10	50.68	Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G...	[more]

BLAST of MC09g0864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0864.1	MC09g0864.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity