MC09g0762 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0762
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PSII 6.1 kDa protein
Location	MC09: 7366347 .. 7366670 (-)
RNA-Seq Expression	MC09g0762
Synteny	MC09g0762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATGGTAGGGTTGCCTGCGTTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGGTGCGTCGTTGATCGCTGCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGCTTGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTT

mRNA sequence

TTGATGGTAGGGTTGCCTGCGTTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGGTGCGTCGTTGATCGCTGCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGCTTGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTT

Coding sequence (CDS)

TTGATGGTAGGGTTGCCTGCGTTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGGTGCGTCGTTGATCGCTGCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGCTTGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTT

Protein sequence

LMVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

Homology

[Close]

BLAST of MC09g0762 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-31
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERL 61
           ++GLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+
Sbjct: 30  VLGLPPMGKKKGGVRCSME----TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERM 89

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 109
           STEGTGLPFGLSNNLL WIL GVFGLIW+F+ VYTSSLEEDEESGLSL
Sbjct: 90  STEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of MC09g0762 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-29
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLI-AAVATTMSSPAMALVDERL 61
           ++GLP++ K+  V CS+ E K S       ++  MGASL+ AA A T+S+PAMALVDER+
Sbjct: 31  ILGLPSMTKRSKVTCSI-ENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERM 90

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 109
           STEGTGLPFGLSNNLL WIL GVFGLIW+ Y VY S LEEDEESGLSL
Sbjct: 91  STEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of MC09g0762 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-23
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 3   VGLPALGKKGG--VRCSMEEGKASKEAENKCSSL-GMGASLIAAVATTMSSPAMALVDER 62
           +GLP +  +    VRC+      SKEA    +++ G GASL+A  AT  ++PAMALVDER
Sbjct: 22  LGLPQMRARRSERVRCNY-----SKEAATPAAAVKGAGASLLAMAAT--AAPAMALVDER 81

Query: 63  LSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESG 106
           +STEGTGL  GLSNNLL WILLGVFGLIWS Y +YTS LEEDEESG
Sbjct: 82  MSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of MC09g0762 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-10
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 38  ASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSS 97
           A L    AT  + PA ALVDER++ +GTG PFG+++ +L W+LLGVFG +W+ + +    
Sbjct: 43  AMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKD 102

Query: 98  LE--EDEESGLSL 109
           L   ED + GL L
Sbjct: 103 LGDFEDADDGLKL 115

[Close]

BLAST of MC09g0762 vs. NCBI nr
Match: XP_022155800.1 (photosystem II reaction center W protein, chloroplastic [Momordica charantia])

HSP 1 Score: 201 bits (511), Expect = 2.23e-64
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS 61
           ++GLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS
Sbjct: 30  LLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS 89

Query: 62  TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
Sbjct: 90  TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 136

[Close]

BLAST of MC09g0762 vs. NCBI nr
Match: XP_008451280.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 171 bits (432), Expect = 2.60e-52
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERL
Sbjct: 32  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 91

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEEDEESGLSL
Sbjct: 92  STEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of MC09g0762 vs. NCBI nr
Match: XP_038900227.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 169 bits (428), Expect = 1.02e-51
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERL
Sbjct: 31  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 90

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WIL GVFGLIW+FYIVYTS+LEEDEESGLSL
Sbjct: 91  STEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of MC09g0762 vs. NCBI nr
Match: XP_004146953.1 (photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus] >KGN44755.1 hypothetical protein Csa_015975 [Cucumis sativus])

HSP 1 Score: 168 bits (426), Expect = 2.06e-51
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERL
Sbjct: 31  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 90

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEEDEESGLSL
Sbjct: 91  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of MC09g0762 vs. NCBI nr
Match: XP_031745255.1 (photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 168 bits (426), Expect = 2.66e-51
Identity = 92/107 (85.98%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 3   VGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLS 62
           +GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLS
Sbjct: 40  IGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLS 99

Query: 63  TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           TEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEEDEESGLSL
Sbjct: 100 TEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 145

[Close]

BLAST of MC09g0762 vs. ExPASy TrEMBL
Match: A0A6J1DNF4 (PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111022836 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.08e-64
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS 61
           ++GLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS
Sbjct: 30  LLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLS 89

Query: 62  TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
Sbjct: 90  TEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 136

[Close]

BLAST of MC09g0762 vs. ExPASy TrEMBL
Match: A0A1S3BQI5 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.26e-52
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERL
Sbjct: 32  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 91

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEEDEESGLSL
Sbjct: 92  STEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of MC09g0762 vs. ExPASy TrEMBL
Match: A0A0A0K4V6 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1)

HSP 1 Score: 168 bits (426), Expect = 9.98e-52
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERL
Sbjct: 31  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 90

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVF LIW+FYIVYTS+LEEDEESGLSL
Sbjct: 91  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of MC09g0762 vs. ExPASy TrEMBL
Match: A0A5D3DRC0 (PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00650 PE=3 SV=1)

HSP 1 Score: 167 bits (424), Expect = 2.08e-51
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GK + E ENK S+L MGASLIAA  A TMSSPAMALVDERL
Sbjct: 32  LLGLPALGKKGGVRCSME-GKGNGEVENKSSNLEMGASLIAAACAATMSSPAMALVDERL 91

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVFGLIW+FYIVYTS+LEEDEESGLSL
Sbjct: 92  STEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of MC09g0762 vs. ExPASy TrEMBL
Match: A0A6J1GQI7 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1)

HSP 1 Score: 167 bits (423), Expect = 2.86e-51
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 2   MVGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERL 61
           ++GLPALGKKGGVRCSME GKA+ + ENK S+LGMGASL+AA  A +MSSPAMALVDERL
Sbjct: 31  LLGLPALGKKGGVRCSME-GKANGDVENKSSTLGMGASLVAAAYAASMSSPAMALVDERL 90

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 108
           STEGTGLPFGLSNNLL WILLGVFG IW+FYI+YTS+LEEDEESGLSL
Sbjct: 91  STEGTGLPFGLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL 137

[Close]

BLAST of MC09g0762 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 137.1 bits (344), Expect = 8.3e-33
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 2   MVGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERL 61
           ++GLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+
Sbjct: 30  VLGLPPMGKKKGGVRCSME----TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERM 89

Query: 62  STEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL 109
           STEGTGLPFGLSNNLL WIL GVFGLIW+F+ VYTSSLEEDEESGLSL
Sbjct: 90  STEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of MC09g0762 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	1.2e-31	67.59	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	7.1e-29	64.81	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	3.4e-23	61.32	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	9.6e-10	45.21	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of MC09g0762 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155800.1	2.23e-64	98.13	photosystem II reaction center W protein, chloroplastic [Momordica charantia]	[more]
XP_008451280.1	2.60e-52	86.11	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
XP_038900227.1	1.02e-51	85.19	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_004146953.1	2.06e-51	85.19	photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sati...	[more]
XP_031745255.1	2.66e-51	85.98	photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sati...	[more]

BLAST of MC09g0762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNF4	1.08e-64	98.13	PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111022836 PE=3 SV=1	[more]
A0A1S3BQI5	1.26e-52	86.11	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1	[more]
A0A0A0K4V6	9.98e-52	85.19	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1	[more]
A0A5D3DRC0	2.08e-51	85.19	PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A6J1GQI7	2.86e-51	82.41	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1	[more]

BLAST of MC09g0762 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	8.3e-33	67.59	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 3..108 e-value: 2.3E-48 score: 163.5
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..108
None	No IPR available	PANTHER	PTHR34552:SF1	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0762.1	MC09g0762.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast