MC09g0670 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0670
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	SOSS complex subunit B homolog
Location	MC09: 6121482 .. 6121673 (+)
RNA-Seq Expression	MC09g0670
Synteny	MC09g0670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCTATCACCGGTGGCCGACGAAACGGCCGCAGTTCACTTCCAGTTATGGGGAGATGAGTGCAACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAGAAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

mRNA sequence

TGCCTATCACCGGTGGCCGACGAAACGGCCGCAGTTCACTTCCAGTTATGGGGAGATGAGTGCAACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAGAAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

Coding sequence (CDS)

TGCCTATCACCGGTGGCCGACGAAACGGCCGCAGTTCACTTCCAGTTATGGGGAGATGAGTGCAACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAGAAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

Protein sequence

CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNGKRRKIEKVGEFNMVFVETPNMSETHWVPD

Homology

[Close]

BLAST of MC09g0670 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 5   VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVF 59
           VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+
Sbjct: 43  VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVY 102

[Close]

BLAST of MC09g0670 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 5   VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVF 59
           VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+
Sbjct: 43  VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVY 102

[Close]

BLAST of MC09g0670 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 5   VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVF 59
           VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+
Sbjct: 43  VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVY 102

[Close]

BLAST of MC09g0670 vs. ExPASy Swiss-Prot
Match: Q3SWT1 (SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 5   VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVF 59
           VAD+T +++  +W D  N+++P +II            CLT   G+   ++K+GEF MV+
Sbjct: 43  VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVY 102

[Close]

BLAST of MC09g0670 vs. ExPASy Swiss-Prot
Match: Q66K94 (SOSS complex subunit B1 OS=Xenopus tropicalis OX=8364 GN=nabp2 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 5   VADETAAVHFQLWGDECNVVEPSNII------------CLT--NGKRRKIEKVGEFNMVF 59
           VAD+T +++  +W D  N ++P +II            CLT   G+   ++K+GEF MV+
Sbjct: 43  VADKTGSINISVWDDLGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVY 102

[Close]

BLAST of MC09g0670 vs. NCBI nr
Match: XP_022150258.1 (SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150260.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150261.1 SOSS complex subunit B homolog [Momordica charantia])

HSP 1 Score: 109 bits (272), Expect = 9.16e-29
Identity = 56/78 (71.79%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEF 60
           CLS VADETAAVHFQLWGDEC+ VEPS+II LTNG              KR KIEKVGEF
Sbjct: 36  CLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEF 95

Query: 61  NMVFVETPNMSETHWVPD 64
           NMVFVETPNMSE  WVPD
Sbjct: 96  NMVFVETPNMSEIRWVPD 113

[Close]

BLAST of MC09g0670 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 108 bits (271), Expect = 1.38e-28
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 37  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 96

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 97  FKMVFVETPNMSEIHWVPD 115

[Close]

BLAST of MC09g0670 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108 bits (271), Expect = 1.38e-28
Identity = 55/79 (69.62%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWG+EC+VVEPS+I+ LTNG               KR KIEKVGE
Sbjct: 37  CQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGE 96

Query: 61  FNMVFVETPNMSETHWVPD 64
           FNMVFVETPNMSE HWVPD
Sbjct: 97  FNMVFVETPNMSEIHWVPD 115

[Close]

BLAST of MC09g0670 vs. NCBI nr
Match: XP_004135609.1 (SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protein Csa_007591 [Cucumis sativus])

HSP 1 Score: 108 bits (271), Expect = 1.38e-28
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 37  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 96

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 97  FKMVFVETPNMSEIHWVPD 115

[Close]

BLAST of MC09g0670 vs. NCBI nr
Match: XP_008450623.1 (PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >KAA0050905.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa] >TYK10256.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.41e-28
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 38  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 97

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 98  FKMVFVETPNMSEIHWVPD 116

[Close]

BLAST of MC09g0670 vs. ExPASy TrEMBL
Match: A0A6J1D803 (SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 4.43e-29
Identity = 56/78 (71.79%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG--------------KRRKIEKVGEF 60
           CLS VADETAAVHFQLWGDEC+ VEPS+II LTNG              KR KIEKVGEF
Sbjct: 36  CLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEF 95

Query: 61  NMVFVETPNMSETHWVPD 64
           NMVFVETPNMSE  WVPD
Sbjct: 96  NMVFVETPNMSEIRWVPD 113

[Close]

BLAST of MC09g0670 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 6.66e-29
Identity = 55/79 (69.62%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWG+EC+VVEPS+I+ LTNG               KR KIEKVGE
Sbjct: 37  CQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGE 96

Query: 61  FNMVFVETPNMSETHWVPD 64
           FNMVFVETPNMSE HWVPD
Sbjct: 97  FNMVFVETPNMSEIHWVPD 115

[Close]

BLAST of MC09g0670 vs. ExPASy TrEMBL
Match: A0A0A0LW03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 6.66e-29
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 37  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 96

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 97  FKMVFVETPNMSEIHWVPD 115

[Close]

BLAST of MC09g0670 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 6.85e-29
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 38  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 97

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 98  FKMVFVETPNMSEIHWVPD 116

[Close]

BLAST of MC09g0670 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 6.85e-29
Identity = 56/79 (70.89%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTNG---------------KRRKIEKVGE 60
           C S VADETAAVHFQLWGDEC+VVEPS+II LTNG               KR KIEKVGE
Sbjct: 38  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGE 97

Query: 61  FNMVFVETPNMSETHWVPD 64
           F MVFVETPNMSE HWVPD
Sbjct: 98  FKMVFVETPNMSEIHWVPD 116

[Close]

BLAST of MC09g0670 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-18
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   CLSPVADETAAVHFQLWGDECNVVEPSNIICLTN---------------GKRRKIEKVGE 60
           C++  ADETAAVH QLWGDEC+  E  +I+ LTN               GKR K+EK+GE
Sbjct: 37  CIALAADETAAVHIQLWGDECDAFEAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGE 96

Query: 61  FNMVFVETPNMSETHWVPD 65
           F + FVETPN+SE  W+PD
Sbjct: 97  FTVAFVETPNISEIQWIPD 115

The following BLAST results are available for this feature:

BLAST of MC09g0670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6QLK2	1.1e-05	36.76	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	1.1e-05	36.76	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]
Q8R2Y9	1.1e-05	36.76	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]
Q3SWT1	1.1e-05	36.76	SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1	[more]
Q66K94	2.5e-05	36.76	SOSS complex subunit B1 OS=Xenopus tropicalis OX=8364 GN=nabp2 PE=2 SV=1	[more]

BLAST of MC09g0670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150258.1	9.16e-29	71.79	SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS comple...	[more]
XP_038878334.1	1.38e-28	70.89	SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ...	[more]
XP_022961520.1	1.38e-28	69.62	SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex...	[more]
XP_004135609.1	1.38e-28	70.89	SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protei...	[more]
XP_008450623.1	1.41e-28	70.89	PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICT...	[more]

BLAST of MC09g0670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D803	4.43e-29	71.79	SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE...	[more]
A0A6J1HAL0	6.66e-29	69.62	SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=...	[more]
A0A0A0LW03	6.66e-29	70.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1	[more]
A0A1S3BPN4	6.85e-29	70.89	SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1	[more]
A0A5D3CIR3	6.85e-29	70.89	SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of MC09g0670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63690.1	2.0e-18	51.90	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 3..59 e-value: 3.7E-10 score: 42.0
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 1..59
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 1..59
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0670.1	MC09g0670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding