MC09g0531 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0531
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transcription factor UPBEAT1
Location	MC09: 4832581 .. 4832877 (-)
RNA-Seq Expression	MC09g0531
Synteny	MC09g0531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAGCAGAAGATCAACAAGAAGAAGCCATTAACAAAGCCAAAGCCAAAGCCACCATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCTAAT

mRNA sequence

GAAGAAGCAGAAGATCAACAAGAAGAAGCCATTAACAAAGCCAAAGCCAAAGCCACCATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCTAAT

Coding sequence (CDS)

GAAGAAGCAGAAGATCAACAAGAAGAAGCCATTAACAAAGCCAAAGCCAAAGCCACCATTAGAAGAAGATCAAGAAGAAGAAGAAGATCAAGATCCTCAGGAATTGAGAAACGGGTCAGCACATTGAGAAGCCTCGTACCAAACATGAACAACAACAACAGCATTAATTGTCATCAAACCTCCACTGTCGGATTACAACACCTCTTCACTACCACAGCCGATTACATATTGTTGCTGCAAACAAGAGTCAGATTGATGCAGACTTTGCTTCATGTCTTGTCTGCTTCTCCTTCTAAT

Protein sequence

EEAEDQQEEAINKAKAKATIRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN

Homology

[Close]

BLAST of MC09g0531 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 5.87e-15
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   EEAEDQQEEAINKAKAKATIRRRSR----RRRRSRSSG-IEKRVSTLRSLVPNMNNNNSI 60
           EE + +Q+EAI K+      RRRS     ++RRSRSS  IE+RVSTLR+LVPNMNNNN  
Sbjct: 26  EEQQQEQQEAIAKS---FNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNN-- 85

Query: 61  NCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN 99
           N H++    L+ LFT TADYIL LQTRVR M+ L+ VLSAS ++
Sbjct: 86  NNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSND 124

[Close]

BLAST of MC09g0531 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 9.39e-15
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 1   EEAEDQQEEAINKAKAKATIRRRSR-----RRRRSRSSG-IEKRVSTLRSLVPNMNNNNS 60
           E+ E Q+++   +A AK+  RRR       ++RRSRSS  IE+RVSTLR+LVPNMNNNN 
Sbjct: 27  EQQEQQEQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNN- 86

Query: 61  INCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN 99
            N H++    L+ LFT TADYIL LQTRVR M+ L+ VLSAS ++
Sbjct: 87  -NNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSND 129

[Close]

BLAST of MC09g0531 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.45e-11
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 20  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLL 79
           +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL L
Sbjct: 85  LKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSL 144

Query: 80  QTRVRLMQTLLHVLSASPSN 99
           QTRVRLM+TL+ VLS   S+
Sbjct: 145 QTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of MC09g0531 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 1.09e-09
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 32  SSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQTLLH 91
           S+ I +RV+TLR+LVPNMNN+N    +  +   L+ LFT TADYIL LQTRVR M+TL+ 
Sbjct: 62  STRIVQRVTTLRNLVPNMNNDND---NDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVD 121

Query: 92  VLSASPS 98
           VLS S S
Sbjct: 122 VLSGSSS 125

[Close]

BLAST of MC09g0531 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.15e-07
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 12  NKAKAKATIRRRSR--------RRRRSRSSG-----IEKRVSTLRSLVPNMNNNNSINCH 71
           N    + T RRRSR        R RRS SS      IE+RV+ LR+LVPN  N+N  +  
Sbjct: 70  NNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPN--NDNHQDDD 129

Query: 72  QTSTVG-LQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN 99
           ++ T G L+ LFT TADYIL LQTRVRLM+TL+ VLS   S+
Sbjct: 130 ESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSS 169

[Close]

BLAST of MC09g0531 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.04e-12
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 20  IRRRSRRRRRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLL 79
           +++RSRR   S SS IE+RV+TLRSLVPN +N+N  +  ++    L+ LFT TADYIL L
Sbjct: 85  LKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSL 144

Query: 80  QTRVRLMQTLLHVLSASPSN 99
           QTRVRLM+TL+ VLS   S+
Sbjct: 145 QTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of MC09g0531 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.04e-07
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 12  NKAKAKATIRRRSR--------RRRRSRSSG-----IEKRVSTLRSLVPNMNNNNSINCH 71
           N    + T RRRSR        R RRS SS      IE+RV+ LR+LVPN  N+N  +  
Sbjct: 70  NNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPN--NDNHQDDD 129

Query: 72  QTSTVG-LQHLFTTTADYILLLQTRVRLMQTLLHVLSASPSN 99
           ++ T G L+ LFT TADYIL LQTRVRLM+TL+ VLS   S+
Sbjct: 130 ESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSS 169

[Close]

BLAST of MC09g0531 vs. ExPASy TrEMBL
Match: A0A6J5WKV7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18158 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.89e-06
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 29  RSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQT 88
           R RS+GI +RV TL+ L+PN +          S++GL  LF  TADYIL LQ+RVRLMQ 
Sbjct: 58  RMRSNGIRRRVKTLKRLIPNTD----------SSMGLDGLFRETADYILSLQSRVRLMQI 113

Query: 89  LLHVLS 94
           +L  L+
Sbjct: 118 MLQALA 113

[Close]

BLAST of MC09g0531 vs. ExPASy TrEMBL
Match: I1NHA0 (BHLH transcription factor OS=Glycine max OX=3847 GN=100794627 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.11e-05
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 28  RRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQ 87
           RR   +GI +RV TL+SLVPN           + ++GL  LF  TADYIL LQTRVR+MQ
Sbjct: 68  RRGSYNGIRRRVRTLKSLVPN-----------SDSLGLDGLFRQTADYILSLQTRVRVMQ 125

Query: 88  TLLHVLSAS 96
            ++ VL+ S
Sbjct: 128 VMVKVLTGS 125

[Close]

BLAST of MC09g0531 vs. ExPASy TrEMBL
Match: A0A445F6P8 (Transcription factor UPBEAT1 OS=Glycine soja OX=3848 GN=D0Y65_054414 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.11e-05
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 28  RRSRSSGIEKRVSTLRSLVPNMNNNNSINCHQTSTVGLQHLFTTTADYILLLQTRVRLMQ 87
           RR   +GI +RV TL+SLVPN           + ++GL  LF  TADYIL LQTRVR+MQ
Sbjct: 68  RRGSYNGIRRRVRTLKSLVPN-----------SDSLGLDGLFRQTADYILSLQTRVRVMQ 125

Query: 88  TLLHVLSAS 96
            ++ VL+ S
Sbjct: 128 VMVKVLTGS 125

The following BLAST results are available for this feature:

BLAST of MC09g0531 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025601.1	5.87e-15	56.73	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6593250.1	9.39e-15	54.29	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031744332.1	1.45e-11	56.25	transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ...	[more]
KAG6575752.1	1.09e-09	58.21	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0046707.1	2.15e-07	50.00	transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio...	[more]

BLAST of MC09g0531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	7.04e-12	56.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	1.04e-07	50.00	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J5WKV7	6.89e-06	50.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS18158 PE=...	[more]
I1NHA0	1.11e-05	49.28	BHLH transcription factor OS=Glycine max OX=3847 GN=100794627 PE=2 SV=1	[more]
A0A445F6P8	1.11e-05	49.28	Transcription factor UPBEAT1 OS=Glycine soja OX=3848 GN=D0Y65_054414 PE=4 SV=1	[more]

BLAST of MC09g0531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 15..95
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 15..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0531.1	MC09g0531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated