MC09g0427 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0427
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein 2, chloroplastic
Location	MC09: 3894639 .. 3897614 (-)
RNA-Seq Expression	MC09g0427
Synteny	MC09g0427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGTATTAAATAGTTAATATTGTGTAAAAATTTATATTGAAATTTTACAAATATAAATAAAAAATATCACTTTTTAAAAGCATAAGGTCCAAAATAGATATTTTGGAAATTCATAAAATTAATAGATACATCAACCAAAATAAAGAAAAAGTTGAGATGGCAAGGACAAAATAGTATTTAAACCAAAATTTATTTTTAAAACAAATTTTAACATATGTAAAGAAGAAAAAGAAAAAAAAAATAGAAAATAGAAATGCCACGTGCGAGCAACACGAGTAAGCTCAATCTCTCTCTCTATCGACTGGATAAACCTCTGGCCTCGCCTCAGGGTTCTGTAATTCTATTTCTCTCGTTCGCACCCCAAAGCTTCACACTCCAAAATCCACAACAATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTGCGTAATTATCTGCCTAAAATGGAATTGTTCTGATTTTTCGTCGTCTTCTTTTGGGGATTTTGAATTTTGTTCGATACCCAGCTTCGAATTTTTGATTTCGGGGGCAATCTGGCTGGACTCTCTTGCGCGCCTTATCTGCTTATTTGTCTTGAATCTTCGCATTGATCGAGTTCACTTGTTCATAAATTCATCAAACTGCTGAGTGTATGCGGGTTTTTGGGCTAAATTTGTTGACCATTATCTTCCAAATGGAGTCTGCAGATTGTTATCTTCTAGAAAGAATTTTGAACCCTTTCTTTACTTTTGTTTTGCACAAGCTTTGAAGCAGATTGTTTAGTTTTCGAGGTTGGATTTGGTTCGATTGTCGTCTATGAATCAAACCGAATCAATTTTCACCTCCATCAAACTAGAACATGATAAGAAGTAGTTCAATAATAGCTAAACACACGGCAGTCCTTGTTTATTGCTTATATATGGTTTCCAAAGTATCCATTCCAACTCGAATATCTTATGTCATTCTCATTAGAACATGCCTGTGGCTGTGGAGCCAATCACATAAGTTTTATCCATTGTTGCTCAGGAATTGGGATCTTATTTCCGGGACACAGGTAAGTTTTAGGTCTTTAAGGAGAGGGATGAGTTCATAGGAGGTGAAAGGACAGTTACATTCTGTTAGTCAACAGTAAGTAGCCATGTATTAAGGGGACAGAGACTCAGAGAGTGTAGAGGAAGTCAGGAAGATGTTAGGAGAAACAGAATCAAATCCTCTGAAAAGCCTGTCATTGGCTCGTAGAACTTCTGTAGGTTATAATTCAATTCTTGCTGCTTTTCGGGTTCGATCAGGGTCGTTATGTTTGCATGAGAATGTCTTAGATAAGCAGATATGGCTTTTCAGCTGCTCGTTGTAGCTGTAGCTGATCTTTAGCTAGAATCTTCTTGGTGACAAATCCAAGTGTAAACTACTTTTGGCACCAGAAAATTAAATGCCGTAGATGCTGTAGCATTTGGTTGACTTCGGTCATGTATCGAACTCACCCCGCACGGCCTTAAACCGAACTGTCTGTTAAATCGAGTAGCTAGCAACTTTCCTTGAATTTTAGCATCACGATCCACTTGTCCTTAGTCTTTACTTGGTGGCTGTTGATGTTGGCTTTAAGACTCCAATTTTCTTCCATTTCCAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGTAAGTTAATACCTACAAAGTGAAATTCTCTCATATTGTCTCACTATATCAGTTGTGCTGACGGTATTGTTCTATCGACAGGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTACGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTGTAAGTAACTTGCTCCCATTCTATATTATACCAGATGCTGTTATACCAATACCGATAACGTCTCTTGGTTCGGGACTTGTGCATCGGCGACATTTTTATTCCTGTTTGGTAGACATTGATCAGTAGAGCATTTATCTGGTAGTATCATCCAGAATCACTAACTTCTCATAAAAGTTTCTGAAACTAGTTGAAGAATAGACATGGCAAACTCAAACATCTTTCGTTAGTTATCGATATTACTCAACGGTTGGACGATGCAATATTAACCAGAAAACTCTCATACAGAAAAGGTTAGTGTCTGACATGCTTTTCCTTTTCTTTTGCAGTTGTTGGAAGGCCAAGCAATCCGTGTAAACAAGGCTTAATTTTGTAGGGTTATTTTGTAAGAAAATGTATGGAAATTGCTCTTCTGCCTATTGTCATAATATTGATAGGGCAGCATTTTCACTTAATTTCTCTGTATTAATCATTAATGTATAATTTTGTTTATTTTTCTGTTTAAGATAATACACGTGGCACTTTATTGATGAGAAATACTAAAATTGTATTAAATAATTTGTTAAAAAAAAAAGGTTAAC

mRNA sequence

GTTTGTATTAAATAGTTAATATTGTGTAAAAATTTATATTGAAATTTTACAAATATAAATAAAAAATATCACTTTTTAAAAGCATAAGGTCCAAAATAGATATTTTGGAAATTCATAAAATTAATAGATACATCAACCAAAATAAAGAAAAAGTTGAGATGGCAAGGACAAAATAGTATTTAAACCAAAATTTATTTTTAAAACAAATTTTAACATATGTAAAGAAGAAAAAGAAAAAAAAAATAGAAAATAGAAATGCCACGTGCGAGCAACACGAGTAAGCTCAATCTCTCTCTCTATCGACTGGATAAACCTCTGGCCTCGCCTCAGGGTTCTGTAATTCTATTTCTCTCGTTCGCACCCCAAAGCTTCACACTCCAAAATCCACAACAATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTACGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTTTGTTGGAAGGCCAAGCAATCCGTGTAAACAAGGCTTAATTTTGTAGGGTTATTTTGTAAGAAAATGTATGGAAATTGCTCTTCTGCCTATTGTCATAATATTGATAGGGCAGCATTTTCACTTAATTTCTCTGTATTAATCATTAATGTATAATTTTGTTTATTTTTCTGTTTAAGATAATACACGTGGCACTTTATTGATGAGAAATACTAAAATTGTATTAAATAATTTGTTAAAAAAAAAAGGTTAAC

Coding sequence (CDS)

ATGGCTTCCCTCTCATCCATATTATCGCCGCCGAATCTCATCCACAGCTCCACAAAACCCACCGAAACCCCACATAAATTATCCAATCAATTTCTCCGACCGATCTCGTTCCACCGCCGTCCTCCCCTCCTTCGACTTTCGTCGGTGCTTCAAACATCCGCCGCCAAACACACCATCAGACTCTTCGCCGTCGCCGAAGCGGCGGTCACCGCTCAGGATCCCTCTTCGGCGGCCGCCAGGAGACTCTACATTGGCAACATACCCAGAAATGTGGATAACGAGCAGCTCACTCGGATTGTCGAAGAACACGGGGCTGTGGAGAAGGCCGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGCAGATTCGCCTTTGTTACCATGAAAACAGTCGACGATGCAAATGCAGTAATTGAGAAATTGAATGAGACAGAAGTTGAAGGGCGTACGATTAAAGTCAACATAACAGAAAAACCTTTGGTTACTACTACTTCAGTTGATCTGTCACTTCTTCAGGCAGAGGAATCCCAGTTCATCGACAGTCCCTACAAAGTCTACGTAGGAAATATTTCGAGCACCGTTTCTACCGAAACACTAAAAAAATTGTTCTCCGAGAAGGGTAATGTTCTCAGTGCAAAGGTCTCTCGGGTTCCTGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTTGAAACCGCCATTTCATCTTTTAACAACGCTTTGTTGGAAGGCCAAGCAATCCGTGTAAACAAGGCTTAA

Protein sequence

MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIRLFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFNNALLEGQAIRVNKA

Homology

[Close]

BLAST of MC09g0427 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.8e-71
Identity = 142/194 (73.20%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NALLEGQAIRVNKA 260
           N+LLEGQ IRVNKA
Sbjct: 242 NSLLEGQKIRVNKA 253

[Close]

BLAST of MC09g0427 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.6e-69
Identity = 150/263 (57.03%), Postives = 192/263 (73.00%), Query Frame = 0


Query: 1   MASLSSILSPPNLI-HSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTI 60
           MA++SSIL    L+ H S+  + +  K S+Q L  +        L+L + + T+     +
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  RLFAVAEAAVTAQDPSSA---AARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKY 120
           R     E + ++   SS+    ARRLY+GNIPRN++N++L  IVEEHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEES 180
           SGRSRRF FVTMKTV+DANAVIEKLN+TE+ GR IKVNITEKPL     +D++  QAE+S
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL---EGMDIATTQAEDS 180

Query: 181 QFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEE 240
           QF++SPYKVY+GN++ TV+ E LK  FSEKG VL AKV R PGTSKS+G+GFV+FSSEEE
Sbjct: 181 QFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEE 240

Query: 241 VETAISSFNNALLEGQAIRVNKA 260
           VE AI + NN++LEGQ IRVNKA
Sbjct: 241 VEAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of MC09g0427 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-30
Identity = 71/196 (36.22%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 64  VAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T Q  +S    RLY+GN+P  + + +L++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQ--ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPY 183
            FVTM ++++A   ++  N +++ GRT+KVN  E P      V  + ++     ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISS 243
           KVY GN+   ++++ LK  F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FNNALLEGQAIRVNKA 260
            N   +EG+A+R+N A
Sbjct: 282 MNGVEVEGRALRLNLA 295

[Close]

BLAST of MC09g0427 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-29
Identity = 70/187 (37.43%), Postives = 116/187 (62.03%), Query Frame = 0


Query: 73  DPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 132
           +  S    RLY+GN+P ++ + QL+ I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 133 DANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKVYVGNISS 192
           +A   I   + ++V GRT+KVN  E P      V  + +++    F+DSP+K+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 193 TVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFNNALLEGQ 252
            ++++ L+  F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 253 AIRVNKA 260
            +R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of MC09g0427 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.8e-29
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 0


Query: 71  AQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 130
           A+ P  +   +L++GN+P +VD+  L  + E  G VE  EV+YDK +GRSR F FVTM T
Sbjct: 78  AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMST 137

Query: 131 VDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSV-----------------DLSLLQA 190
            ++  A  ++ N  E++GR I+VN    P     S                  + S   A
Sbjct: 138 KEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGA 197

Query: 191 EESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSS 250
              + +DS  +VYVGN+S  V    LK+LFSE+GNV+ AKV     + +S G+GFVT+SS
Sbjct: 198 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 257

Query: 251 EEEVETAISSFNNALLEGQAIRVNKA 260
            +EV  AI S N   L+G++IRV+ A
Sbjct: 258 SKEVNDAIDSLNGVDLDGRSIRVSAA 283

[Close]

BLAST of MC09g0427 vs. NCBI nr
Match: XP_022153800.1 (30S ribosomal protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 484 bits (1246), Expect = 6.97e-172
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR
Sbjct: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA
Sbjct: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQAIRVNKA
Sbjct: 241 ISSFNNALLEGQAIRVNKA 259

[Close]

BLAST of MC09g0427 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 408 bits (1048), Expect = 9.55e-142
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of MC09g0427 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 407 bits (1047), Expect = 1.36e-141
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of MC09g0427 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 407 bits (1047), Expect = 2.97e-141
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 202

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 263 ISSFNNALLEGQPIRVNKA 279

[Close]

BLAST of MC09g0427 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406 bits (1044), Expect = 3.88e-141
Identity = 222/259 (85.71%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE AV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of MC09g0427 vs. ExPASy TrEMBL
Match: A0A6J1DHV7 (30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021229 PE=4 SV=1)

HSP 1 Score: 484 bits (1246), Expect = 3.37e-172
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR
Sbjct: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA
Sbjct: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQAIRVNKA
Sbjct: 241 ISSFNNALLEGQAIRVNKA 259

[Close]

BLAST of MC09g0427 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 4.62e-142
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of MC09g0427 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 6.57e-142
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of MC09g0427 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 1.44e-141
Identity = 223/259 (86.10%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIHSS KPTE P  LS QFLRPISFH R  LLR+S  LQTSA K   R
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QDPSS AAR+LYIGNIPRNV NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTVDDANAVIEKLN+TEV GRTIKVNITEKPLV T  VD+SLLQA+ESQFID
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT--VDMSLLQADESQFID 202

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 263 ISSFNNALLEGQPIRVNKA 279

[Close]

BLAST of MC09g0427 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 7.66e-128
Identity = 210/259 (81.08%), Postives = 223/259 (86.10%), Query Frame = 0


Query: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60
           MAS+SSIL+P NLIH+S KPTE    LS+QFLRPISFH    LLR+S V    AA+   R
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SS A R+LYIGNIPRNV+NE+LTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAT--QGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180
           RRFAFVTMKTV+DANA IEKLNETEV GR IKVNITEKP+V T  VDLS+LQAEESQFID
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNT--VDLSILQAEESQFID 180

Query: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SPYKVYVGNISSTVSTETLK  FSEKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQAIRVNKA 259
           ISSFNNALLEGQ IRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 251

[Close]

BLAST of MC09g0427 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-72
Identity = 142/194 (73.20%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NALLEGQAIRVNKA 260
           N+LLEGQ IRVNKA
Sbjct: 242 NSLLEGQKIRVNKA 253

[Close]

BLAST of MC09g0427 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-72
Identity = 142/194 (73.20%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 66  EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 125
           E    A DPSS AARR+YIGNIPR V NEQLT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 126 VTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPYKV 185
            TMK+V+DANAV+EKLN   VEGR IKVNITEKP+   +S DLS+LQ+E+S F+DSPYKV
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI--ASSPDLSVLQSEDSAFVDSPYKV 181

Query: 186 YVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISSFN 245
           YVGN++ TV+ E L+ LFSEKG V+SAKVSRVPGTSKS+G+GFVTFSSEE+VE AI + N
Sbjct: 182 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 241

Query: 246 NALLEGQAIRVNKA 260
           N+LLEGQ IRVNKA
Sbjct: 242 NSLLEGQKIRVNKA 253

[Close]

BLAST of MC09g0427 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-33
Identity = 100/271 (36.90%), Postives = 150/271 (55.35%), Query Frame = 0


Query: 1   MASLSSILS------PPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLL----RLSSVL 60
           MA+ S +LS       PNL+H         +  SNQ L   +F    PLL      S   
Sbjct: 1   MAASSVLLSCFKSHHQPNLLHGC-------NYSSNQTLLRFNFSTPKPLLISSRSCSRRF 60

Query: 61  QTSAAKHTIRLFAVA--EAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEK 120
           +  +   T++L      + A    DP +A   +LY GN+P NVD+  L +I+++    E 
Sbjct: 61  RVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL 120

Query: 121 AEVMYDKYSGRSRRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDL 180
            EV+Y++ +G+SR FAFVTM  V+D N +I+ L+ TE  GR +KVN  +KP         
Sbjct: 121 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPN------ 180

Query: 181 SLLQAEESQFIDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGF 240
                +E  + ++ +K++VGN+S TV++E+L   F E G+V+ A+V     T +S GYGF
Sbjct: 181 -----KEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGF 240

Query: 241 VTFSSEEEVETAISSFNNALLEGQAIRVNKA 260
           V +SS+ E+ETA+ S +   LEG+AIRVN A
Sbjct: 241 VCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of MC09g0427 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-31
Identity = 71/196 (36.22%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 64  VAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRF 123
           V E   T Q  +S    RLY+GN+P  + + +L++I  E G V   +++YDK + RSR F
Sbjct: 102 VEEEKQTTQ--ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGF 161

Query: 124 AFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFIDSPY 183
            FVTM ++++A   ++  N +++ GRT+KVN  E P      V  + ++     ++DSP+
Sbjct: 162 GFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH 221

Query: 184 KVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAISS 243
           KVY GN+   ++++ LK  F ++  VL AKV     T +S G+GF++F S E V++A+++
Sbjct: 222 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 281

Query: 244 FNNALLEGQAIRVNKA 260
            N   +EG+A+R+N A
Sbjct: 282 MNGVEVEGRALRLNLA 295

[Close]

BLAST of MC09g0427 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-28
Identity = 76/202 (37.62%), Postives = 115/202 (56.93%), Query Frame = 0


Query: 72  QDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 131
           ++ S +A  +L++GN+P NVD+ QL ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 132 DDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQF------------- 191
            +  A  ++ N  E++GR ++VN    P       +    +   S F             
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPP----PKREDGFSRGPRSSFGSSGSGYGGGGGS 202

Query: 192 -IDSPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEV 251
              S  +VYVGN+S  V    L+ LFSE+G V+ A+V     + +S G+GFVT+ S +EV
Sbjct: 203 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 262

Query: 252 ETAISSFNNALLEGQAIRVNKA 260
           + AI S + A L+G+ IRV++A
Sbjct: 263 QNAIKSLDGADLDGRQIRVSEA 280

The following BLAST results are available for this feature:

BLAST of MC09g0427 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYM4	2.8e-71	73.20	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P82277	2.6e-69	57.03	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q39061	4.0e-30	36.22	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	1.5e-29	37.43	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08937	5.8e-29	39.32	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of MC09g0427 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153800.1	6.97e-172	100.00	30S ribosomal protein 2, chloroplastic [Momordica charantia]	[more]
XP_022991923.1	9.55e-142	86.10	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022954329.1	1.36e-141	86.10	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	2.97e-141	86.10	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
KAG6575671.1	3.88e-141	85.71	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of MC09g0427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHV7	3.37e-172	100.00	30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JXN0	4.62e-142	86.10	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	6.57e-142	86.10	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	1.44e-141	86.10	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A5A7UYL6	7.66e-128	81.08	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC09g0427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	2.0e-72	73.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	2.0e-72	73.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	5.2e-33	36.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.9e-31	36.22	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.9e-28	37.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 e-value: 5.4E-25 score: 99.0 coord: 184..257 e-value: 1.4E-21 score: 87.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 82..152 e-value: 2.2E-18 score: 65.8 coord: 185..255 e-value: 5.8E-17 score: 61.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 80..158 score: 17.966896
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 183..259 score: 18.188618
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 170..259 e-value: 2.5E-23 score: 84.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..160 e-value: 1.1E-25 score: 92.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..259
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..259
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 81..158 e-value: 3.37336E-33 score: 113.862
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 71..158
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 178..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0427.1	MC09g0427.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding