MC09g0426 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0426
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC09: 3882447 .. 3882635 (-)
RNA-Seq ExpressionMC09g0426
SyntenyMC09g0426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTGCTTTCTTGCATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAAATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTCAATCTCATTCTGATTCTCACTCCCCAAAAGCTCCTATAATTGTCTCCTATTTCCCAATTTCTTCAAACTTATCTCGCTTG

mRNA sequence

CTCTCTGCTTTCTTGCATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAAATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTCAATCTCATTCTGATTCTCACTCCCCAAAAGCTCCTATAATTGTCTCCTATTTCCCAATTTCTTCAAACTTATCTCGCTTG

Coding sequence (CDS)

CTCTCTGCTTTCTTGCATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAAATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTCAATCTCATTCTGATTCTCACTCCCCAAAAGCTCCTATAATTGTCTCCTATTTCCCAATTTCTTCAAACTTATCTCGCTTG

Protein sequence

LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNLSRL
Homology
BLAST of MC09g0426 vs. NCBI nr
Match: KAE8646409.1 (hypothetical protein Csa_016523 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 5.17e-13
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQ-NSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSN 60
          +S  L CF+PS SPKVSH EQ +SN KL+Q   K K  S + + SPKAPI++SYFP+SSN
Sbjct: 7  VSTLLGCFIPSKSPKVSHEEQQHSNSKLKQQ--KPKSDSSTSTQSPKAPIVLSYFPVSSN 66

Query: 61 LSRL 63
          LSRL
Sbjct: 67 LSRL 68

BLAST of MC09g0426 vs. NCBI nr
Match: XP_038899513.1 (uncharacterized protein LOC120086791 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 1.34e-12
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 2  SAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNLS 61
          S  L CFLPS SPKVS GE+NSN K++  P K K +S   S S KAPIIVSYFP+SSN S
Sbjct: 8  SILLGCFLPSQSPKVSRGEENSNQKIK--PKKPKSES---SKSSKAPIIVSYFPVSSNFS 64

Query: 62 RL 63
          RL
Sbjct: 68 RL 64

BLAST of MC09g0426 vs. NCBI nr
Match: XP_028952805.1 (uncharacterized protein LOC108170940 [Malus domestica])

HSP 1 Score: 54.3 bits (129), Expect = 7.77e-08
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  SAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSK--HKPQSHSDSHSPKAPIIVSYFPISSN 61
          SAFL+CFLPS S +VS   + SN  + +H SK   K +S S   S  API+VSYFP +S 
Sbjct: 5  SAFLNCFLPSASSQVSDNARGSNSSVMEHSSKDSEKRKSQSSLSSSGAPILVSYFPQNSY 64

Query: 62 LSRL 63
          LSRL
Sbjct: 65 LSRL 68

BLAST of MC09g0426 vs. NCBI nr
Match: XP_013591373.1 (PREDICTED: uncharacterized protein LOC106299904 [Brassica oleracea var. oleracea] >XP_013665868.1 uncharacterized protein BNAC01G03020D [Brassica napus] >KAG2241041.1 hypothetical protein Bca52824_090328 [Brassica carinata] >VDD47936.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 51.6 bits (122), Expect = 7.66e-07
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNL 60
          L++F  CF+P    K+S  + +SN K     S  KP+S S   SP+AP+IVSYFP+ SNL
Sbjct: 4  LASFFGCFVPKSGSKISSSDGSSNSKTL---SLEKPKSKSK--SPRAPMIVSYFPVGSNL 61

Query: 61 SRL 63
          SRL
Sbjct: 64 SRL 61

BLAST of MC09g0426 vs. NCBI nr
Match: XP_009151594.1 (uncharacterized protein LOC103874892 [Brassica rapa] >XP_013641126.1 uncharacterized protein BNAA01G01890D [Brassica napus] >RID77357.1 hypothetical protein BRARA_A00279 [Brassica rapa] >VDC73785.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 48.9 bits (115), Expect = 8.69e-06
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNL 60
          L++F  CF+P    K+S  +  SN K+    S  KP+S S   SP+AP+IVSYFP+ SNL
Sbjct: 4  LASFFGCFVPKSGSKISSSD-GSNSKVM---SLEKPKSKSK--SPRAPMIVSYFPVGSNL 60

Query: 61 SRL 63
          SRL
Sbjct: 64 SRL 60

BLAST of MC09g0426 vs. ExPASy TrEMBL
Match: A0A0A0K638 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.36e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQ-NSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSN 60
          +S    CFLPS S KVSH EQ +SN KL+Q   K K  S + + SPKAPI++SYFP+SSN
Sbjct: 7  VSTLFGCFLPSKSSKVSHEEQQHSNSKLKQQ--KPKSDSSTSTQSPKAPIVLSYFPVSSN 66

Query: 61 LSRL 63
          LSRL
Sbjct: 67 LSRL 68

BLAST of MC09g0426 vs. ExPASy TrEMBL
Match: A0A3P6FFT4 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T00325H PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.71e-07
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNL 60
          L++F  CF+P    K+S  + +SN K     S  KP+S S   SP+AP+IVSYFP+ SNL
Sbjct: 4  LASFFGCFVPKSGSKISSSDGSSNSKTL---SLEKPKSKSK--SPRAPMIVSYFPVGSNL 61

Query: 61 SRL 63
          SRL
Sbjct: 64 SRL 61

BLAST of MC09g0426 vs. ExPASy TrEMBL
Match: A0A398AHS5 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T00287Z PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.21e-06
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNL 60
          L++F  CF+P    K+S  +  SN K+    S  KP+S S   SP+AP+IVSYFP+ SNL
Sbjct: 4  LASFFGCFVPKSGSKISSSD-GSNSKVM---SLEKPKSKSK--SPRAPMIVSYFPVGSNL 60

Query: 61 SRL 63
          SRL
Sbjct: 64 SRL 60

BLAST of MC09g0426 vs. ExPASy TrEMBL
Match: M4D568 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.21e-06
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 1  LSAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNL 60
          L++F  CF+P    K+S  +  SN K+    S  KP+S S   SP+AP+IVSYFP+ SNL
Sbjct: 4  LASFFGCFVPKSGSKISSSD-GSNSKVM---SLEKPKSKSK--SPRAPMIVSYFPVGSNL 60

Query: 61 SRL 63
          SRL
Sbjct: 64 SRL 60

BLAST of MC09g0426 vs. ExPASy TrEMBL
Match: A0A2P5AY30 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.50e-06
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 2  SAFLHCFLPSLSPKVSHGEQNSNIKLQQHPSKHKPQSHSDSHSPKAPIIVSYFPISSNLS 61
          S+  HCF PS SP+ S   +N   K++      K  S S S S KAP++VS+FP++S+LS
Sbjct: 5  SSLFHCFRPSSSPRASDQAENPKKKVKSMEKSSKSSS-SKSKSSKAPLVVSHFPVNSSLS 64

Query: 62 RL 63
          R+
Sbjct: 65 RM 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646409.15.17e-1360.94hypothetical protein Csa_016523 [Cucumis sativus][more]
XP_038899513.11.34e-1264.52uncharacterized protein LOC120086791 [Benincasa hispida][more]
XP_028952805.17.77e-0853.13uncharacterized protein LOC108170940 [Malus domestica][more]
XP_013591373.17.66e-0749.21PREDICTED: uncharacterized protein LOC106299904 [Brassica oleracea var. oleracea... [more]
XP_009151594.18.69e-0649.21uncharacterized protein LOC103874892 [Brassica rapa] >XP_013641126.1 uncharacter... [more]
Match NameE-valueIdentityDescription
A0A0A0K6388.36e-1259.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1[more]
A0A3P6FFT43.71e-0749.21Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T00325H PE=4 SV=1[more]
A0A398AHS54.21e-0649.21Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA01T00287Z PE=4 SV=... [more]
M4D5684.21e-0649.21Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
A0A2P5AY309.50e-0643.55Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..47
NoneNo IPR availablePANTHERPTHR37748FAMILY NOT NAMEDcoord: 1..63
NoneNo IPR availablePANTHERPTHR37748:SF1SUBFAMILY NOT NAMEDcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0426.1MC09g0426.1mRNA