MC09g0425 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0425
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC09: 3879195 .. 3879386 (-)
RNA-Seq ExpressionMC09g0425
SyntenyMC09g0425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTGCTTTCTTGGATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAGATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTGACCAATCTCTTTCGGATTCTCGCTCCCCAAAAGCTCCTATAATCGTCTCCCATTTCCCGGTTTCTGCAAACTTATCTCGCTTG

mRNA sequence

CTCTCTGCTTTCTTGGATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAGATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTGACCAATCTCTTTCGGATTCTCGCTCCCCAAAAGCTCCTATAATCGTCTCCCATTTCCCGGTTTCTGCAAACTTATCTCGCTTG

Coding sequence (CDS)

CTCTCTGCTTTCTTGGATTGCTTTCTTCCTTCTCTCTCCCCAAAGGTCTCCCATGGGGAACAAGATTCAAACATTAAACTCCAACAACACCCCTCCAAACACAAACCTGACCAATCTCTTTCGGATTCTCGCTCCCCAAAAGCTCCTATAATCGTCTCCCATTTCCCGGTTTCTGCAAACTTATCTCGCTTG

Protein sequence

LSAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSANLSRL
Homology
BLAST of MC09g0425 vs. NCBI nr
Match: KAE8646409.1 (hypothetical protein Csa_016523 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 3.79e-13
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1  LSAFLDCFLPSLSPKVSHGEQD-SNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSA 60
          +S  L CF+PS SPKVSH EQ  SN KL+Q   K K D S S ++SPKAPI++S+FPVS+
Sbjct: 7  VSTLLGCFIPSKSPKVSHEEQQHSNSKLKQQ--KPKSDSSTS-TQSPKAPIVLSYFPVSS 66

Query: 61 NLSRL 64
          NLSRL
Sbjct: 67 NLSRL 68

BLAST of MC09g0425 vs. NCBI nr
Match: XP_038899513.1 (uncharacterized protein LOC120086791 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 8.07e-12
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 2  SAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDS-RSPKAPIIVSHFPVSAN 61
          S  L CFLPS SPKVS GE++SN K+       KP +  S+S +S KAPIIVS+FPVS+N
Sbjct: 8  SILLGCFLPSQSPKVSRGEENSNQKI-------KPKKPKSESSKSSKAPIIVSYFPVSSN 64

Query: 62 LSRL 64
           SRL
Sbjct: 68 FSRL 64

BLAST of MC09g0425 vs. NCBI nr
Match: XP_028952805.1 (uncharacterized protein LOC108170940 [Malus domestica])

HSP 1 Score: 52.8 bits (125), Expect = 3.28e-07
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 2  SAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSK----HKPDQSLSDSRSPKAPIIVSHFPV 61
          SAFL+CFLPS S +VS   + SN  + +H SK     K   SLS S    API+VS+FP 
Sbjct: 5  SAFLNCFLPSASSQVSDNARGSNSSVMEHSSKDSEKRKSQSSLSSSG---APILVSYFPQ 64

Query: 62 SANLSRL 64
          ++ LSRL
Sbjct: 65 NSYLSRL 68

BLAST of MC09g0425 vs. NCBI nr
Match: XP_013591373.1 (PREDICTED: uncharacterized protein LOC106299904 [Brassica oleracea var. oleracea] >XP_013665868.1 uncharacterized protein BNAC01G03020D [Brassica napus] >KAG2241041.1 hypothetical protein Bca52824_090328 [Brassica carinata] >VDD47936.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 51.6 bits (122), Expect = 7.96e-07
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  LSAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSAN 60
          L++F  CF+P    K+S  +  SN K     S  KP    S S+SP+AP+IVS+FPV +N
Sbjct: 4  LASFFGCFVPKSGSKISSSDGSSNSKTL---SLEKPK---SKSKSPRAPMIVSYFPVGSN 61

Query: 61 LSRL 64
          LSRL
Sbjct: 64 LSRL 61

BLAST of MC09g0425 vs. NCBI nr
Match: POO00096.1 (hypothetical protein TorRG33x02_042230 [Trema orientale])

HSP 1 Score: 50.8 bits (120), Expect = 1.76e-06
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 2  SAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSANL 61
          S+F +CF PS S +VS   + S  K+    S  K  +S S+S+S KAP+++S+FPV++ L
Sbjct: 5  SSFFNCFRPSSSSRVSDHIESSKKKVAS--SMEKSSKSSSESKSSKAPVVLSYFPVNSYL 64

Query: 62 SRL 64
          SRL
Sbjct: 65 SRL 65

BLAST of MC09g0425 vs. ExPASy TrEMBL
Match: A0A0A0K638 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.13e-12
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 1  LSAFLDCFLPSLSPKVSHGEQD-SNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSA 60
          +S    CFLPS S KVSH EQ  SN KL+Q   K K D S S ++SPKAPI++S+FPVS+
Sbjct: 7  VSTLFGCFLPSKSSKVSHEEQQHSNSKLKQQ--KPKSDSSTS-TQSPKAPIVLSYFPVSS 66

Query: 61 NLSRL 64
          NLSRL
Sbjct: 67 NLSRL 68

BLAST of MC09g0425 vs. ExPASy TrEMBL
Match: A0A3P6FFT4 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T00325H PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.85e-07
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  LSAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSAN 60
          L++F  CF+P    K+S  +  SN K     S  KP    S S+SP+AP+IVS+FPV +N
Sbjct: 4  LASFFGCFVPKSGSKISSSDGSSNSKTL---SLEKPK---SKSKSPRAPMIVSYFPVGSN 61

Query: 61 LSRL 64
          LSRL
Sbjct: 64 LSRL 61

BLAST of MC09g0425 vs. ExPASy TrEMBL
Match: A0A2P5FQL1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_042230 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.52e-07
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 2  SAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSANL 61
          S+F +CF PS S +VS   + S  K+    S  K  +S S+S+S KAP+++S+FPV++ L
Sbjct: 5  SSFFNCFRPSSSSRVSDHIESSKKKVAS--SMEKSSKSSSESKSSKAPVVLSYFPVNSYL 64

Query: 62 SRL 64
          SRL
Sbjct: 65 SRL 65

BLAST of MC09g0425 vs. ExPASy TrEMBL
Match: A0A397YIW5 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA08T34136Z PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.84e-07
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0

Query: 1  LSAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSAN 60
          L++F  CF+P  S K+S    DSN K+           SL   +SP+AP+IVS+FP  +N
Sbjct: 4  LASFFGCFVPKSSAKIS-STNDSNSKV----------LSLEKPKSPRAPVIVSYFPAGSN 56

Query: 61 LSRL 64
          LSRL
Sbjct: 64 LSRL 56

BLAST of MC09g0425 vs. ExPASy TrEMBL
Match: A0A2P5AY30 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.45e-06
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 2  SAFLDCFLPSLSPKVSHGEQDSNIKLQQHPSKHKPDQSLSDSRSPKAPIIVSHFPVSANL 61
          S+   CF PS SP+ S  +Q  N K +    +     S S S+S KAP++VSHFPV+++L
Sbjct: 5  SSLFHCFRPSSSPRAS--DQAENPKKKVKSMEKSSKSSSSKSKSSKAPLVVSHFPVNSSL 64

Query: 62 SRL 64
          SR+
Sbjct: 65 SRM 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646409.13.79e-1361.54hypothetical protein Csa_016523 [Cucumis sativus][more]
XP_038899513.18.07e-1257.81uncharacterized protein LOC120086791 [Benincasa hispida][more]
XP_028952805.13.28e-0749.25uncharacterized protein LOC108170940 [Malus domestica][more]
XP_013591373.17.96e-0746.88PREDICTED: uncharacterized protein LOC106299904 [Brassica oleracea var. oleracea... [more]
POO00096.11.76e-0644.44hypothetical protein TorRG33x02_042230 [Trema orientale][more]
Match NameE-valueIdentityDescription
A0A0A0K6386.13e-1260.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428965 PE=4 SV=1[more]
A0A3P6FFT43.85e-0746.88Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC1T00325H PE=4 SV=1[more]
A0A2P5FQL18.52e-0744.44Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_042230 PE=4 SV... [more]
A0A397YIW59.84e-0743.75Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA08T34136Z PE=4 SV=... [more]
A0A2P5AY303.45e-0642.86Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_338100 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0425.1MC09g0425.1mRNA