MC09g0306 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0306
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionthionin-like protein 2
LocationMC09: 2733174 .. 2733452 (-)
RNA-Seq ExpressionMC09g0306
SyntenyMC09g0306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGTAGTTTTTGTGGCAATTTTGAGCTTATTTGCAGGCAGGTCCACAGCCCGGTTCGGGGATTGCTTTGCCAAGTGCTACGGTCCATGCTGTTATACACCCTTCGATTCCATCTACTGCTCTACAAAGTGCGTTACACAATGCGCCGGGGCCGCCTCCTCCTATGCCTTCCCCACGGCCTTCCACAAGCCCACTACTGCTTATAACTTCTGCAAGCTTGGTTGTGCCACCTCTCTTTGCACCAACTTCAGCACCAAGAATGACCCCGGTTCGTATCTT

mRNA sequence

GTAGTAGTTTTTGTGGCAATTTTGAGCTTATTTGCAGGCAGGTCCACAGCCCGGTTCGGGGATTGCTTTGCCAAGTGCTACGGTCCATGCTGTTATACACCCTTCGATTCCATCTACTGCTCTACAAAGTGCGTTACACAATGCGCCGGGGCCGCCTCCTCCTATGCCTTCCCCACGGCCTTCCACAAGCCCACTACTGCTTATAACTTCTGCAAGCTTGGTTGTGCCACCTCTCTTTGCACCAACTTCAGCACCAAGAATGACCCCGGTTCGTATCTT

Coding sequence (CDS)

GTAGTAGTTTTTGTGGCAATTTTGAGCTTATTTGCAGGCAGGTCCACAGCCCGGTTCGGGGATTGCTTTGCCAAGTGCTACGGTCCATGCTGTTATACACCCTTCGATTCCATCTACTGCTCTACAAAGTGCGTTACACAATGCGCCGGGGCCGCCTCCTCCTATGCCTTCCCCACGGCCTTCCACAAGCCCACTACTGCTTATAACTTCTGCAAGCTTGGTTGTGCCACCTCTCTTTGCACCAACTTCAGCACCAAGAATGACCCCGGTTCGTATCTT

Protein sequence

VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSIYCSTKCVTQCAGAASSYAFPTAFHKPTTAYNFCKLGCATSLCTNFSTKNDPGSYL
Homology
BLAST of MC09g0306 vs. NCBI nr
Match: KAG7025781.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 7.94e-18
Identity = 50/90 (55.56%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 1  VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPT 60
          +VV   ILSL AGRSTA FG C+AKC+  C  TP   I  C  KC+  C   AS+   PT
Sbjct: 4  IVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFPASA---PT 63

Query: 61 AFHKPTTAYNFCKLGCATSLCTNFSTKNDP 89
            +   T Y FCKLGCATSLCT FSTK DP
Sbjct: 64 DLNHLDTHY-FCKLGCATSLCTKFSTKTDP 89

BLAST of MC09g0306 vs. NCBI nr
Match: KAG7014098.1 (Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 2.26e-17
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPT 60
          VV+   ILSL AGRSTA F  C+AKC+  C  TP  ++  C   C+ +C   AS+   P 
Sbjct: 4  VVIICFILSLMAGRSTASFRKCYAKCFIACAITPGITLGTCGATCLAKCLFIASA---PM 63

Query: 61 AFHKPTTAYNFCKLGCATSLCTNFSTKNDP 89
           F+   T Y FCKLGCATS+CT FSTKNDP
Sbjct: 64 DFNHMNTHY-FCKLGCATSMCTKFSTKNDP 89

BLAST of MC09g0306 vs. NCBI nr
Match: XP_038899787.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 4.55e-17
Identity = 47/84 (55.95%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 7  ILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPTAFHKPT 66
          I+SL  GRSTA FG C+AKC+  C  TP   I  C  KC+  C   ASS   P  F+   
Sbjct: 10 IMSLVVGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLGDCLFIASS---PLDFNHLD 69

Query: 67 TAYNFCKLGCATSLCTNFSTKNDP 89
          T Y FCKLGCATSLCT FSTK DP
Sbjct: 70 THY-FCKLGCATSLCTKFSTKKDP 89

BLAST of MC09g0306 vs. NCBI nr
Match: KAG6593441.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 6.44e-17
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 1  VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPT 60
          +VV   ILSL AGRSTA FG C+AKC+  C  TP   I  C  KC+  C   AS+   P 
Sbjct: 4  IVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFPASA---PR 63

Query: 61 AFHKPTTAYNFCKLGCATSLCTNFSTKNDP 89
            +   T Y FCKLGCATSLCT FSTK DP
Sbjct: 64 DLNHLDTHY-FCKLGCATSLCTKFSTKTDP 89

BLAST of MC09g0306 vs. NCBI nr
Match: XP_022151472.1 (thionin-like protein 2 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.01e-16
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 7  ILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPTAFHKPT 66
          +LSL AG+STA FG C+AKC+  C  TP   +  C+ KC+T C   A+S      F+   
Sbjct: 12 VLSLVAGKSTASFGKCYAKCFVVCAITPGIPVGTCAAKCLTDCLFRAASTTAD--FNDQI 71

Query: 67 TAYNFCKLGCATSLCTNFSTKNDP 89
              FCKLGCATSLCT FSTK DP
Sbjct: 72 DTRYFCKLGCATSLCTKFSTKKDP 93

BLAST of MC09g0306 vs. ExPASy TrEMBL
Match: A0A0A0KC18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.91e-18
Identity = 50/94 (53.19%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 1  VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPT 60
          VV+   ILSL AGRSTA FG C+AKC+  C  TP   +  C  KC+  C   ASS   P 
Sbjct: 4  VVLICFILSLVAGRSTASFGKCYAKCFIVCAITPGIPVGTCGAKCLADCLFIASS---PM 63

Query: 61 AFHKPTTAYNFCKLGCATSLCTNFSTKNDPGSYL 93
            +   T Y FCKLGCATS CT FSTK DPG  L
Sbjct: 64 DLNYMDTHY-FCKLGCATSRCTKFSTKKDPGKKL 93

BLAST of MC09g0306 vs. ExPASy TrEMBL
Match: A0A6J1DDL8 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019402 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.91e-17
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 7  ILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPTAFHKPT 66
          +LSL AG+STA FG C+AKC+  C  TP   +  C+ KC+T C   A+S      F+   
Sbjct: 12 VLSLVAGKSTASFGKCYAKCFVVCAITPGIPVGTCAAKCLTDCLFRAASTTAD--FNDQI 71

Query: 67 TAYNFCKLGCATSLCTNFSTKNDP 89
              FCKLGCATSLCT FSTK DP
Sbjct: 72 DTRYFCKLGCATSLCTKFSTKKDP 93

BLAST of MC09g0306 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.38e-17
Identity = 50/90 (55.56%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 1   VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSI-YCSTKCVTQCAGAASSYAFPT 60
           VVV   ILSL AGRSTA FG C+AKC+  C  TP   I  C  KC+  C   AS+   P 
Sbjct: 39  VVVICFILSLVAGRSTASFGKCYAKCFIVCAITPGVPIGTCGGKCLADCLFLASA---PR 98

Query: 61  AFHKPTTAYNFCKLGCATSLCTNFSTKNDP 89
             +   T Y FCKLGCATSLCT FSTK DP
Sbjct: 99  DLNHLDTHY-FCKLGCATSLCTKFSTKTDP 124

BLAST of MC09g0306 vs. ExPASy TrEMBL
Match: A0A059AJ89 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03009 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.14e-14
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 1  VVVFVAILSLFAGRSTARFGDCFAKCYGPCCYTPFDSIYCSTKCVTQCAGAASSYAFPTA 60
          V+V   +L LF G+S A F DC+  C+  C  T  + + CS KC+  C G  S       
Sbjct: 7  VLVVCLVLGLFLGQSRADFQDCYVGCFVACVVTGDNVVKCSLKCLKDCIGLPS------- 66

Query: 61 FHKPTTAYNFCKLGCATSLCTNFSTKNDPG 90
           H  T A  FCKLGCA+SLC N S+K+DPG
Sbjct: 67 -HGLTDAEYFCKLGCASSLCINLSSKDDPG 88

BLAST of MC09g0306 vs. ExPASy TrEMBL
Match: A0A061GH02 (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao OX=3641 GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.16e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 7  ILSLFAGRSTARFGDCFAKCYGPCCYTPFDSIY-CSTKCVTQCAGAASSYAFPTAFHKPT 66
          +L L  G+STA F  C+  C+  C  TP ++++ CS KC+  C     S++FP+      
Sbjct: 15 VLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCI--IPSFSFPSG---KD 74

Query: 67 TAYNFCKLGCATSLCTNFSTKNDPG 90
          T Y FCKLGCATSLCT+ S+K +PG
Sbjct: 75 TQY-FCKLGCATSLCTDLSSKENPG 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7025781.17.94e-1855.56Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7014098.12.26e-1752.22Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038899787.14.55e-1755.95thionin-like protein 2 [Benincasa hispida][more]
KAG6593441.16.44e-1754.44Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022151472.11.01e-1651.19thionin-like protein 2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KC186.91e-1853.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1[more]
A0A6J1DDL84.91e-1751.19thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019402 PE=4 SV=1[more]
A0A6J1KDK05.38e-1755.56thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1[more]
A0A059AJ891.14e-1444.44Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03009 PE=4 SV... [more]
A0A061GH021.16e-1244.71To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038975Thionin-like proteinPANTHERPTHR36312THIONIN-LIKE PROTEIN 1coord: 2..90
NoneNo IPR availablePANTHERPTHR36312:SF1THIONIN-LIKE PROTEIN 1coord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0306.1MC09g0306.1mRNA