MC09g0264 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0264
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	MC09: 2407070 .. 2409270 (+)
RNA-Seq Expression	MC09g0264
Synteny	MC09g0264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCAAACCCTCCTTCTAGCGCTTTAGTTTTCTTTTTATGGATTTTTTTTCCTTCCCATTTTACTCTTCGCGGTGGGCTCAAAACCTTACCCAAACCAGGCGATGCGACACCAGATAAGGCCATAAAGAACCACACCGCACACCGATTCTCTCCCATTTGTTTTCTTGAAGCTCCACTATCCAAAAAATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATGTAAGTCGTTGTGCCGAATTTGGGGTTTTAATGTGAATTGCCTTGCCTAATCGTGTGTTTTTCTAGTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATGTGAGTTTTTCCACTTCCTCAACTTTATGTAATGATAATAATAATGGGTTTTCAAACGATTTACTGTGTCATTCCTCCTTTGATGTTCTCTTGCAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGGTGATTTTACTTGCTTTAGAATTTGGATCATGTTATGTTATGAAGAGGATTTATTCAGTGCCCTTTTCATTTCGTCTTTCTGAAACAAATTGTTTGTTTAATCATTATGATAAAGTTTAAAATGATGGTTTAAATCTCATTTTTTCCGTCAAACTTTCAAGCTGGTTCAATTTTAGTCCATGATATTTCAAAATGTCTATTTTGGTCTGTGAATCTTCAAGTTTGCTCCATTTTGATCCCGAGCATTCAAATCTCTGTTTTAGTCTATGAACCTCCAAAAAAATTATCATTTTAGTCCTTGTCATATTATTTTGCCACCTTAACTATGAACTCACATTAACATGTTAGTACACATACTTAAAAGTTACGTGTTAATTTGTTAATAACAAAATATACTTTAGGACCCAAATTTTTGTTTTCTGGGACCAAAGTAGTTTTTCTCTTTTTAAGTTTAGGAACTTTTGAAAGTTTAGATACCAAAATAAAACAAACTTAAAAGTTCAAGGACTAAATTGTACATTTTAAAAGTTCGGGAACCAAAGTAGAATAATCTCGTAAATTTAGGAAATAAAAAAGGATTTTTAGTGAAGGATTTCCACAGGCTGGCATTGAAGTTTAAAACTCAATTTCCTGTGCATTTGCCCATTGAAAAACGACTGAAATGAAGAAGAAATTCAATCTTAATCTCTGACTGAACCATTTTACTGTCCCAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGGTAAGTAAAACAGTAGCCGTTGACATTCTGCACTCTCAAACAGAGAATTCATGACATTTCTTTTAGTTTAAATCATTTTTAACGTCTCTTTCTAGCTGAATCAACCCAAGAAATCTAATGATTTTGTTTCATATATGTACAGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGGTAATCTGTACAAGTTTGATTGATGATGATGTTGAATACAACAGTCTCCTCTCTTTCACAAAAGTTCATGAGTATTTTTTGTGTTTTCTTTGGCTGCAGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCAGAATCTGCATAATTTTTATCCTTTTTTTGTTTGTTACCCAACAAGAAGATTGAGCTATGGAGATTAACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCATGTATCACCTATCAACATTGTAATTATTCCGTTTATATTATATAATCTGTTACTTTTTCCAAGTACCTTAAGTATCTTCACACTAGTATGATATTGTCCGTTCTATGCATAACCATCACGGTTTTGCTTTTGCTTTCACTCAAAATGTCTCTACCAATACACATAG

mRNA sequence

GTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCAAACCCTCCTTCTAGCGCTTTAGTTTTCTTTTTATGGATTTTTTTTCCTTCCCATTTTACTCTTCGCGGTGGGCTCAAAACCTTACCCAAACCAGGCGATGCGACACCAGATAAGGCCATAAAGAACCACACCGCACACCGATTCTCTCCCATTTGTTTTCTTGAAGCTCCACTATCCAAAAAATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCAGAATCTGCATAATTTTTATCCTTTTTTTGTTTGTTACCCAACAAGAAGATTGAGCTATGGAGATTAACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCATGTATCACCTATCAACATTGTAATTATTCCGTTTATATTATATAATCTGTTACTTTTTCCAAGTACCTTAAGTATCTTCACACTAGTATGATATTGTCCGTTCTATGCATAACCATCACGGTTTTGCTTTTGCTTTCACTCAAAATGTCTCTACCAATACACATAG

Coding sequence (CDS)

ATGGAGGCCTACCATCTGGGTTCATATCGTTTATCATCTTCATCCTCCCTTCGCTCTTTCAACTACATTACAAACTCCACCCACACCCTCAAACGCCTCCGCCCCCTAAATTTCCGCAGAGCCAAAATCAGAGCCGTTGGCACTGTTCCTCAGAGTCAATCCGAAACCACTGACCCCGAGGAGCCTCCGATTGTGGATTTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACCCCCGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTCAGAAACATAATGCTGGATTCTAACATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACTTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTGAACCCTCGCACGGACATAGAGAAAGACAAACTTAAAAGGAAACCAAAAAATTGGAGACTGGCTTGCCAAACCACTGTTGGGAAACCAGATTCCAGAGGAATGCTTGTTGTTCAACAGTTACCTGAGTGGAAAGCTCATGAATGGGGTTATGAGAAAGTAGAGCTTTCAGAGTCATCTGAATCTTCAGAATCTGCATAA

Protein sequence

MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYEKVELSESSESSESA

Homology

[Close]

BLAST of MC09g0264 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-64
Identity = 124/192 (64.58%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 6   LGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNF---------RRAKIRAVGTVPQSQSET 65
           +GS +LS S  + S     + +H  K  +P ++         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
            D P+EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of MC09g0264 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 402 bits (1034), Expect = 1.57e-141
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 200
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 200

[Close]

BLAST of MC09g0264 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 374 bits (961), Expect = 1.91e-130
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSYRLSSSSS RSFNYIT+S+ TLKR RPL+FRRA IRAVGTVPQ+QSETTDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYEKVE+SESSES
Sbjct: 181 HEWGYEKVEISESSES 196

[Close]

BLAST of MC09g0264 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 369 bits (947), Expect = 2.60e-128
Identity = 180/196 (91.84%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSY L SSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+VELS+SSES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of MC09g0264 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 364 bits (935), Expect = 1.76e-126
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTVPQSQSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+V+LSE SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of MC09g0264 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 3.55e-126
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+V+LSE SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of MC09g0264 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 7.61e-142
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 200
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 200

[Close]

BLAST of MC09g0264 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 369 bits (947), Expect = 1.26e-128
Identity = 180/196 (91.84%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLGSY L SSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+VELS+SSES
Sbjct: 181 HEWGYEEVELSDSSES 196

[Close]

BLAST of MC09g0264 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 8.51e-127
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTVPQSQSE  DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+V+LSE SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of MC09g0264 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 363 bits (933), Expect = 1.72e-126
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           ME  HLGSY LSSSSS RSFNYITNS+HTLKR R L FRR ++RAVGTV QSQSE TDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSES 196
           HEWGYE+V+LSE SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of MC09g0264 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 362 bits (929), Expect = 6.28e-126
Identity = 178/200 (89.00%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60
           MEA HLG      SSS RSFNYITNSTHTL R RPL FRR+KIRAVGTVPQSQS+T++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 200
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 194

[Close]

BLAST of MC09g0264 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 124/192 (64.58%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 6   LGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNF---------RRAKIRAVGTVPQSQSET 65
           +GS +LS S  + S     + +H  K  +P ++         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
            D P+EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of MC09g0264 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of MC09g0264 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-25
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of MC09g0264 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-16
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKR 149
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of MC09g0264 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 40  RAKIRAVGTVPQSQSETTDPE-----EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           RA++ +  +   S S+ + P+      P  ++  F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of MC09g0264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	2.5e-64	64.58	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of MC09g0264 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145222.1	1.57e-141	100.00	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_038899995.1	1.91e-130	93.37	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]
XP_004141758.1	2.60e-128	91.84	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
KAA0059320.1	1.76e-126	90.82	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_008462178.1	3.55e-126	90.82	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]

BLAST of MC09g0264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ7	7.61e-142	100.00	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A0A0KC78	1.26e-128	91.84	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A5A7UW39	8.51e-127	90.82	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CGA8	1.72e-126	90.82	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1KDJ1	6.28e-126	89.00	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of MC09g0264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	1.8e-65	64.58	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	1.6e-29	43.15	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	9.0e-25	42.22	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	2.6e-16	39.13	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	1.1e-09	36.17	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 113..161 e-value: 3.0E-10 score: 39.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 90..161 e-value: 2.02143E-8 score: 47.7748
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 74..181 e-value: 8.0E-19 score: 69.4
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 1..188
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 1..188
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 83..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0264.1	MC09g0264.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding