MC09g0097 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0097
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	S-protein homolog
Location	MC09: 953414 .. 953720 (-)
RNA-Seq Expression	MC09g0097
Synteny	MC09g0097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCACATTCCTATGGTGAATGGGCTGAATCAAATTTTTTTTGTGAGCTGCAAGTCTAAAGACACTGATATTGGGGCCACTTCTTAGACCTTGGAGCAGAAATCGTATGGCACTTTGAGCCAAACACTTGGGGAACGACACTATATTGGTGCTATGCTTCAAAGTCTCGTTTGATGTCTTCTGGACTGAAAGTAAACATCATTGGCTCGCTCGCGGCGGCCACCAAGTAAAAAGTCTTATTTGGATAGTCAAAGATGACAAAATTTACTTAAGAAACCTTGCTTCTAATGTCGATGAGTTGATTCAT

mRNA sequence

TGGCACATTCCTATGGTGAATGGGCTGAATCAAATTTTTTTTGTGAGCTGCAAGTCTAAAGACACTGATATTGGGCACTTCTTAGACCTTGGAGCAGAAATCGTATGGCACTTTGAGCCAAACACTTGGGGAACGACACTATATTGGTGCTATTTCAAAGTCTCGTTTGATGTCTTCTGGACTGAAAGTAAACATCATTGGCTCGCTCGCGGCGGCCACCAAGTAAAAAGTCTTATTTGGATAGTCAAAGATGACAAAATTTACTTAAGAAACCTTGCTTCTAATGTCGATGAGTTGATTCAT

Coding sequence (CDS)

TGGCACATTCCTATGGTGAATGGGCTGAATCAAATTTTTTTTGTGAGCTGCAAGTCTAAAGACACTGATATTGGGCACTTCTTAGACCTTGGAGCAGAAATCGTATGGCACTTTGAGCCAAACACTTGGGGAACGACACTATATTGGTGCTATTTCAAAGTCTCGTTTGATGTCTTCTGGACTGAAAGTAAACATCATTGGCTCGCTCGCGGCGGCCACCAAGTAAAAAGTCTTATTTGGATAGTCAAAGATGACAAAATTTACTTAAGAAACCTTGCTTCTAATGTCGATGAGTTGATTCAT

Protein sequence

WHIPMVNGLNQIFFVSCKSKDTDIGHFLDLGAEIVWHFEPNTWGTTLYWCYFKVSFDVFWTESKHHWLARGGHQVKSLIWIVKDDKIYLRNLASNVDELIH

Homology

[Close]

BLAST of MC09g0097 vs. ExPASy Swiss-Prot
Match: Q9LW22 (S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 30/93 (32.26%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 3   IPMVNGLN----QIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWC--YFKVS 62
           I + N LN     I  V CKSK+ DIG  +L +G  + + F+ N WGTT +WC  Y    
Sbjct: 26  ITVKNELNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPD 85

Query: 63  FDVFWTESKHHWLARGGHQVKSLIWIVKDDKIY 89
           +  +   + +  +        S  W+ +DD IY
Sbjct: 86  YKRYRGITAYQAIGLFAKDGSSYNWLARDDGIY 118

[Close]

BLAST of MC09g0097 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.4e-04
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 15 VSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYFKVSFDVFWTES 64
          +SC+SKD D+G H L  G   +W F P+ + TTL+ C F  + +V W ++
Sbjct: 47 ISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVKWFDT 96

[Close]

BLAST of MC09g0097 vs. NCBI nr
Match: XP_022155249.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 151 bits (382), Expect = 1.31e-44
Identity = 75/109 (68.81%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   WHIPMVNGLNQIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYF-----KV 60
           +H+ MVNGL++I FV CKSKDT+IG HFLDLGAEIVWHFE N WGTTLYWCY      KV
Sbjct: 43  FHLHMVNGLDEIIFVRCKSKDTNIGDHFLDLGAEIVWHFEANIWGTTLYWCYAAKAGAKV 102

Query: 61  SFDVFWTESKHHWLAR--GGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           SFDVFW+E K  WL    GG  V +LIWI K+D IYLRNL  NVDELIH
Sbjct: 103 SFDVFWSE-KTQWLGERCGGRGVLNLIWIAKEDGIYLRNLTKNVDELIH 150

[Close]

BLAST of MC09g0097 vs. NCBI nr
Match: XP_022155227.1 (S-protein homolog 74-like [Momordica charantia])

HSP 1 Score: 137 bits (344), Expect = 8.60e-39
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 3   IPMVNGLN-QIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYF-----KVS 62
           I + NGL+  I +VSCKSKDT+IG HFLDLGA I WHFEPN WGTTL+WC+      K S
Sbjct: 46  IHVANGLSGDICYVSCKSKDTNIGGHFLDLGANIGWHFEPNFWGTTLFWCFASKSGAKAS 105

Query: 63  FDVFWTESKHHWLAR--GGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           FDVFW E +  WL    GG +  + IWIVKDD IY+RNL  NVDELIH
Sbjct: 106 FDVFWVEKRSSWLRERCGGDETLTCIWIVKDDGIYIRNLTQNVDELIH 153

[Close]

BLAST of MC09g0097 vs. NCBI nr
Match: XP_022155209.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 125 bits (315), Expect = 1.62e-34
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   WHIPMVNGLN-QIFFVSCKSKDTDIGHF-LDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           W + + NGL+ +I F+ CKSKDTDIG   LDLGA+I W F+ N WGTTLYWC+ +     
Sbjct: 35  WRVYVANGLSSEILFLHCKSKDTDIGERNLDLGAQIQWKFQVNFWGTTLYWCFMRKGSDS 94

Query: 61  VSFDVFWTESKHHWLA-RGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           VS DVFW E K  WL  R   Q  S IWI KDD IY+RNL+ NVDE+IH
Sbjct: 95  VSLDVFWVERKTSWLRPRCAPQTMSCIWIAKDDGIYIRNLSENVDEVIH 143

[Close]

BLAST of MC09g0097 vs. NCBI nr
Match: XP_022143724.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 120 bits (302), Expect = 1.44e-32
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   WHIPMVNGL-NQIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           WH+ +VNGL N   F  CKS+DTD+G H L+ GAEI W F+ N WGTTL+WC+ K     
Sbjct: 33  WHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKPGGS 92

Query: 61  VSFDVFWTESKHHWLARGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
            SFDVFW E  H WL        + IW  KDD IY+RN+  N+DEL+H
Sbjct: 93  ASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVH 140

[Close]

BLAST of MC09g0097 vs. NCBI nr
Match: XP_022148919.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 121 bits (304), Expect = 2.05e-32
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   WHIPMVNGLNQ-IFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           WHI +VNGL++   FV CKSKD D+G H L  G EI W F+ N WGTTL+WC+ +     
Sbjct: 72  WHIHVVNGLSKDSLFVHCKSKDNDVGLHNLARGFEIQWSFDENVWGTTLFWCFLRKPGAT 131

Query: 61  VSFDVFWTESKHHWLARGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
            SFDVFW ES+H+WL      + + IWI KDD IYLRN + ++DELIH
Sbjct: 132 ASFDVFWVESRHNWLHHRC-AILTCIWIAKDDGIYLRNNSDHIDELIH 178

[Close]

BLAST of MC09g0097 vs. ExPASy TrEMBL
Match: A0A6J1DPP7 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022387 PE=3 SV=1)

HSP 1 Score: 151 bits (382), Expect = 6.36e-45
Identity = 75/109 (68.81%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   WHIPMVNGLNQIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYF-----KV 60
           +H+ MVNGL++I FV CKSKDT+IG HFLDLGAEIVWHFE N WGTTLYWCY      KV
Sbjct: 43  FHLHMVNGLDEIIFVRCKSKDTNIGDHFLDLGAEIVWHFEANIWGTTLYWCYAAKAGAKV 102

Query: 61  SFDVFWTESKHHWLAR--GGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           SFDVFW+E K  WL    GG  V +LIWI K+D IYLRNL  NVDELIH
Sbjct: 103 SFDVFWSE-KTQWLGERCGGRGVLNLIWIAKEDGIYLRNLTKNVDELIH 150

[Close]

BLAST of MC09g0097 vs. ExPASy TrEMBL
Match: A0A6J1DNS4 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022369 PE=3 SV=1)

HSP 1 Score: 137 bits (344), Expect = 4.16e-39
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 3   IPMVNGLN-QIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYF-----KVS 62
           I + NGL+  I +VSCKSKDT+IG HFLDLGA I WHFEPN WGTTL+WC+      K S
Sbjct: 46  IHVANGLSGDICYVSCKSKDTNIGGHFLDLGANIGWHFEPNFWGTTLFWCFASKSGAKAS 105

Query: 63  FDVFWTESKHHWLAR--GGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           FDVFW E +  WL    GG +  + IWIVKDD IY+RNL  NVDELIH
Sbjct: 106 FDVFWVEKRSSWLRERCGGDETLTCIWIVKDDGIYIRNLTQNVDELIH 153

[Close]

BLAST of MC09g0097 vs. ExPASy TrEMBL
Match: A0A6J1DPK8 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022349 PE=3 SV=1)

HSP 1 Score: 125 bits (315), Expect = 7.87e-35
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   WHIPMVNGLN-QIFFVSCKSKDTDIGHF-LDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           W + + NGL+ +I F+ CKSKDTDIG   LDLGA+I W F+ N WGTTLYWC+ +     
Sbjct: 35  WRVYVANGLSSEILFLHCKSKDTDIGERNLDLGAQIQWKFQVNFWGTTLYWCFMRKGSDS 94

Query: 61  VSFDVFWTESKHHWLA-RGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
           VS DVFW E K  WL  R   Q  S IWI KDD IY+RNL+ NVDE+IH
Sbjct: 95  VSLDVFWVERKTSWLRPRCAPQTMSCIWIAKDDGIYIRNLSENVDEVIH 143

[Close]

BLAST of MC09g0097 vs. ExPASy TrEMBL
Match: A0A6J1CQ65 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1)

HSP 1 Score: 120 bits (302), Expect = 6.99e-33
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   WHIPMVNGL-NQIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           WH+ +VNGL N   F  CKS+DTD+G H L+ GAEI W F+ N WGTTL+WC+ K     
Sbjct: 33  WHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKPGGS 92

Query: 61  VSFDVFWTESKHHWLARGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
            SFDVFW E  H WL        + IW  KDD IY+RN+  N+DEL+H
Sbjct: 93  ASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVH 140

[Close]

BLAST of MC09g0097 vs. ExPASy TrEMBL
Match: A0A6J1D5G6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111017469 PE=3 SV=1)

HSP 1 Score: 121 bits (304), Expect = 9.93e-33
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   WHIPMVNGLNQ-IFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWCYFK----- 60
           WHI +VNGL++   FV CKSKD D+G H L  G EI W F+ N WGTTL+WC+ +     
Sbjct: 72  WHIHVVNGLSKDSLFVHCKSKDNDVGLHNLARGFEIQWSFDENVWGTTLFWCFLRKPGAT 131

Query: 61  VSFDVFWTESKHHWLARGGHQVKSLIWIVKDDKIYLRNLASNVDELIH 101
            SFDVFW ES+H+WL      + + IWI KDD IYLRN + ++DELIH
Sbjct: 132 ASFDVFWVESRHNWLHHRC-AILTCIWIAKDDGIYLRNNSDHIDELIH 178

[Close]

BLAST of MC09g0097 vs. TAIR 10
Match: AT3G26880.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 30/93 (32.26%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 3   IPMVNGLN----QIFFVSCKSKDTDIG-HFLDLGAEIVWHFEPNTWGTTLYWC--YFKVS 62
           I + N LN     I  V CKSK+ DIG  +L +G  + + F+ N WGTT +WC  Y    
Sbjct: 26  ITVKNELNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPD 85

Query: 63  FDVFWTESKHHWLARGGHQVKSLIWIVKDDKIY 89
           +  +   + +  +        S  W+ +DD IY
Sbjct: 86  YKRYRGITAYQAIGLFAKDGSSYNWLARDDGIY 118

The following BLAST results are available for this feature:

BLAST of MC09g0097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW22	1.8e-05	32.26	S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1	[more]
P0DN93	7.4e-04	40.00	S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1	[more]

BLAST of MC09g0097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155249.1	1.31e-44	68.81	S-protein homolog 1-like [Momordica charantia]	[more]
XP_022155227.1	8.60e-39	62.04	S-protein homolog 74-like [Momordica charantia]	[more]
XP_022155209.1	1.62e-34	56.88	S-protein homolog 1-like [Momordica charantia]	[more]
XP_022143724.1	1.44e-32	51.85	S-protein homolog 1-like [Momordica charantia]	[more]
XP_022148919.1	2.05e-32	53.70	S-protein homolog 1-like [Momordica charantia]	[more]

BLAST of MC09g0097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPP7	6.36e-45	68.81	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022387 PE=3 SV=1	[more]
A0A6J1DNS4	4.16e-39	62.04	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022369 PE=3 SV=1	[more]
A0A6J1DPK8	7.87e-35	56.88	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022349 PE=3 SV=1	[more]
A0A6J1CQ65	6.99e-33	51.85	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1	[more]
A0A6J1D5G6	9.93e-33	53.70	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111017469 PE=3 SV=1	[more]

BLAST of MC09g0097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26880.1	1.2e-06	32.26	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 4..93 e-value: 2.2E-14 score: 53.8
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..89
None	No IPR available	PANTHER	PTHR31232:SF34	PUTATIVE-RELATED	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0097.1	MC09g0097.1	mRNA