MC09g0069 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0069
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationMC09: 671339 .. 671566 (-)
RNA-Seq ExpressionMC09g0069
SyntenyMC09g0069
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGGCTAAATGGATTTGGAGATATATTACTGAAGAAAACGTGCTATGGAAAAGACTCACCAATGCAAAATACTGGAAATCAACTGTTGATTTTTGGCCCTTGATTAAACCACAGCGATTCAAATGTCCTTGGACACAAATTGTGAAATACATCGATCTGGTCAAGGATAGACGCATTTGCAGAATTGGCAGAGGCACTAGAGTCAGTTTTTGGCATGACAGATGG

mRNA sequence

CTTTTGGCTAAATGGATTTGGAGATATATTACTGAAGAAAACGTGCTATGGAAAAGACTCACCAATGCAAAATACTGGAAATCAACTGTTGATTTTTGGCCCTTGATTAAACCACAGCGATTCAAATGTCCTTGGACACAAATTGTGAAATACATCGATCTGGTCAAGGATAGACGCATTTGCAGAATTGGCAGAGGCACTAGAGTCAGTTTTTGGCATGACAGATGG

Coding sequence (CDS)

CTTTTGGCTAAATGGATTTGGAGATATATTACTGAAGAAAACGTGCTATGGAAAAGACTCACCAATGCAAAATACTGGAAATCAACTGTTGATTTTTGGCCCTTGATTAAACCACAGCGATTCAAATGTCCTTGGACACAAATTGTGAAATACATCGATCTGGTCAAGGATAGACGCATTTGCAGAATTGGCAGAGGCACTAGAGTCAGTTTTTGGCATGACAGATGG

Protein sequence

LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRW
Homology
BLAST of MC09g0069 vs. NCBI nr
Match: KAF5187145.1 (hypothetical protein FRX31_023283 [Thalictrum thalictroides])

HSP 1 Score: 75.9 bits (185), Expect = 1.83e-15
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCP-WTQIVKYIDLVKDRR 60
          LLAKW+WR+  E + LW+R+   KY     D+WP    Q   C  W  ++   D+ K   
Sbjct: 5  LLAKWLWRFGCEPDALWRRVIFTKYGNGVNDWWPKPVQQSHGCSLWKGVMNMYDVFKQGI 64

Query: 61 ICRIGRGTRVSFWHDRW 76
           CR+G G R+ FWHD W
Sbjct: 65 SCRVGNGRRILFWHDEW 81

BLAST of MC09g0069 vs. NCBI nr
Match: KAF5202028.1 (hypothetical protein FRX31_008385 [Thalictrum thalictroides])

HSP 1 Score: 67.8 bits (164), Expect = 3.31e-12
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCP-WTQIVKYIDLVKDRR 60
          L AKWIWRY  EE  LW+ + +AKY      +WP    Q   C  W  I++     K+  
Sbjct: 5  LKAKWIWRYGNEEGALWRSVIDAKYGFGDEQWWPRRVSQSHGCSLWRGIMEMFQTFKESI 64

Query: 61 ICRIGRGTRVSFWHD 74
           CR+G G+R+ FW D
Sbjct: 65 SCRLGNGSRIRFWTD 79

BLAST of MC09g0069 vs. NCBI nr
Match: KAF5177290.1 (Ribonuclease h-like superfamily protein [Thalictrum thalictroides])

HSP 1 Score: 69.3 bits (168), Expect = 1.28e-11
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRFKCPWTQIVKYIDLVKDRR 60
          L  KW+WRY  EE  LW+R+  +KY +   ++WP  ++       W  I++  DL K   
Sbjct: 5  LRGKWLWRYGNEETALWRRVIVSKYGRGERNWWPKEVRQSHGVGLWRGIMELYDLFKKNV 64

Query: 61 ICRIGRGTRVSFWHDRW 76
           CR+G+G R  FW D W
Sbjct: 65 SCRVGKGERTQFWLDEW 81

BLAST of MC09g0069 vs. NCBI nr
Match: TYK03140.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.82e-11
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0

Query: 1   LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRFKCPWTQIVKYIDLVKDRR 60
           LL KW+WRY++E N LW+RL   KY  K   D    I     K PW  I+  ID  K  +
Sbjct: 737 LLTKWLWRYLSEPNALWRRLIQCKYKGKYPGDIPSNISSSSSKAPWRSIIDNIDWFKSNQ 796

Query: 61  ICRIGRGTRVSFWHDRW 76
              +  G ++SFW+  W
Sbjct: 797 SWDLNNGDQISFWYSNW 813

BLAST of MC09g0069 vs. NCBI nr
Match: GEY31237.1 (RNA-directed DNA polymerase, eukaryota [Tanacetum cinerariifolium])

HSP 1 Score: 67.4 bits (163), Expect = 7.29e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 1    LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCPWTQIVKYIDLVKDRRI 60
            LL KW+WR+++++  LW R+  A Y  S++D    + P      W  IV  ++L+KD R 
Sbjct: 1295 LLLKWVWRFVSQDRSLWCRVIQAIY-GSSID----LHPTNLASNWCSIVHELNLIKDNRF 1354

Query: 61   -----C--RIGRGTRVSFWHDRW 76
                 C  RIG G+R SFWHD W
Sbjct: 1355 DFISHCKKRIGDGSRTSFWHDSW 1372

BLAST of MC09g0069 vs. ExPASy TrEMBL
Match: A0A7J6VSF2 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_023283 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.84e-16
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCP-WTQIVKYIDLVKDRR 60
          LLAKW+WR+  E + LW+R+   KY     D+WP    Q   C  W  ++   D+ K   
Sbjct: 5  LLAKWLWRFGCEPDALWRRVIFTKYGNGVNDWWPKPVQQSHGCSLWKGVMNMYDVFKQGI 64

Query: 61 ICRIGRGTRVSFWHDRW 76
           CR+G G R+ FWHD W
Sbjct: 65 SCRVGNGRRILFWHDEW 81

BLAST of MC09g0069 vs. ExPASy TrEMBL
Match: A0A7J6WZL2 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_008385 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.60e-12
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRFKCP-WTQIVKYIDLVKDRR 60
          L AKWIWRY  EE  LW+ + +AKY      +WP    Q   C  W  I++     K+  
Sbjct: 5  LKAKWIWRYGNEEGALWRSVIDAKYGFGDEQWWPRRVSQSHGCSLWRGIMEMFQTFKESI 64

Query: 61 ICRIGRGTRVSFWHD 74
           CR+G G+R+ FW D
Sbjct: 65 SCRLGNGSRIRFWTD 79

BLAST of MC09g0069 vs. ExPASy TrEMBL
Match: A0A7J6UYT6 (Ribonuclease h-like superfamily protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_033123 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.18e-12
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0

Query: 1  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRFKCPWTQIVKYIDLVKDRR 60
          L  KW+WRY  EE  LW+R+  +KY +   ++WP  ++       W  I++  DL K   
Sbjct: 5  LRGKWLWRYGNEETALWRRVIVSKYGRGERNWWPKEVRQSHGVGLWRGIMELYDLFKKNV 64

Query: 61 ICRIGRGTRVSFWHDRW 76
           CR+G+G R  FW D W
Sbjct: 65 SCRVGKGERTQFWLDEW 81

BLAST of MC09g0069 vs. ExPASy TrEMBL
Match: A0A5D3BVM7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00150 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.37e-11
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0

Query: 1   LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRFKCPWTQIVKYIDLVKDRR 60
           LL KW+WRY++E N LW+RL   KY  K   D    I     K PW  I+  ID  K  +
Sbjct: 737 LLTKWLWRYLSEPNALWRRLIQCKYKGKYPGDIPSNISSSSSKAPWRSIIDNIDWFKSNQ 796

Query: 61  ICRIGRGTRVSFWHDRW 76
              +  G ++SFW+  W
Sbjct: 797 SWDLNNGDQISFWYSNW 813

BLAST of MC09g0069 vs. ExPASy TrEMBL
Match: A0A5A7UWW1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004130 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.41e-11
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 1   LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRFKCPWTQIVKYIDLVKDRR 60
           LL+KW+WRY +E N LW+RL + KY  K   D    I     K PW  I+  ID  K  +
Sbjct: 77  LLSKWLWRYHSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQ 136

Query: 61  ICRIGRGTRVSFWHDRW 76
              +  G ++SFW+  W
Sbjct: 137 GWNLNNGDQISFWYSNW 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF5187145.11.83e-1540.26hypothetical protein FRX31_023283 [Thalictrum thalictroides][more]
KAF5202028.13.31e-1240.00hypothetical protein FRX31_008385 [Thalictrum thalictroides][more]
KAF5177290.11.28e-1137.66Ribonuclease h-like superfamily protein [Thalictrum thalictroides][more]
TYK03140.12.82e-1138.96LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
GEY31237.17.29e-1139.76RNA-directed DNA polymerase, eukaryota [Tanacetum cinerariifolium][more]
Match NameE-valueIdentityDescription
A0A7J6VSF28.84e-1640.26Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_023283 PE=... [more]
A0A7J6WZL21.60e-1240.00Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_008385 PE=... [more]
A0A7J6UYT66.18e-1237.66Ribonuclease h-like superfamily protein OS=Thalictrum thalictroides OX=46969 GN=... [more]
A0A5D3BVM71.37e-1138.96LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UWW14.41e-1138.96LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0069.1MC09g0069.1mRNA