MC08g_new0656 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0656
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptiontRNA A64-2'-O-ribosylphosphate transferase
LocationMC08: 33994330 .. 33995840 (-)
RNA-Seq ExpressionMC08g_new0656
SyntenyMC08g_new0656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTAGGTTTCCGCTTCGGCTTGGGCTACGGTTTCATCTTGGGCCTTGGCTTCGGACGTTGGTTTCGGCTTGGGCTCCAGGTGGCTAATAATTTTGGAGCCGCCGGAGCTGCGTTCTTCTCATCTTCGTCGACGACGACGACGGCGACTCTCTGTAGTCTCCACTGCCATGGAGTGATTCATCCATGGAGGACGCGCGAAGTTGAGTATATACAAGGCCGTGAGGAACATAAAAGGCAGGGATAATACTCTCTACAACGCTCTTAGGTCAATTTACGAGGACTCTATTTTCGTCCGCGAGATCTCTCAGCTATGGCCGGAGCTTCCTCTTCTCACAAATCTACGTTGCGGCCTCTGGTATTCCCCAATGTTTCACTCCACTTGCTACTTTAAGTCCACCGACGGCCACACCAACAACTACTCTTTCAATACTTCCCGCCTCAATCTTCACGTCGCGCTTTTAGCTGGTACATCCTCTTTTCCCCTATCTGTTTATATTCCATTTTCCAAGTAATTAAGATAATGGAATCATGAAGAGGAAAATTGAGAGAGTATAATTTTCGGTAATTTTGCCAACATTGAATGTTTATAGTGAAGACTTCTAAATGCGCGTTTACAGTTCAGAAGTGTTTGTATGTATGATTCGCTTCTTTGTTTGATGGGTGGGACAGAAGGGAGGGTGTATTATAGTTGATTCCACTCAGAGAGGGAAGCTGTTTCCTTATAGCATGTCCAAAACAAAACAGTTCCCATTTTGACTTGTGTTTTGAATCGGTCTATAAGCAAACATTTAAACAAAATCCATGGCAGTTCATTGGTGCTAGGGGTGAGTATTTGCTATTTCATTTTTCCTAGCTACCATGTTACAGTCTATTATCCTGTGCAAGTTTACTCATGTCACAAAGCACAAAGGGAAGGTTTTTCTAATTTCTTGTACGTGCTTATAATTTCTTTGTAGTGGTAACTCCTAAATCCCCTCACCCCTTTTTCTCAGTCGGGTGTACGTCTGAAACTGAAAAATCGATGAAATTGATTGTAACAAGTTTGTTTGATCAGTTCAATTATCTCAATCTTGAACATTTGGATAGATTTTCCCGATTTCAGTCTGTTCAGTTCGGATTTAATTGGTTTGGTTCTTGGTTCGAGTTAAGTGGACAGTTTGGATTTCAAAAAATTGGTTTCTATGTCAGTTTTTTTTTTTTTTCTCCCTTAAATTGAAAACTGATCTAAACTAACCCACCTACATCCCTACCTCTCAAGGTGAAACTCAAGTGGCCAAATTCTCACATCTTCTGTGTGCAGTGTCGCTCGTAGCAGAAACAGGATCCCTCCACTTCTGATGTGCTTCTGAAAATGGAAGGGAACCTGCTGCTGATTGGGACTGTTCCTTGCATCTTCCTCTTTGGATTTCTGGCACTGAGAAAGCTGTGATTGAAGAACACCTTGAAGAATGGACAAAACAGTTAGATGATAGCGGAGCTGATGTGTCCACACTAGCATCCACCTAG

mRNA sequence

ATGGGCCTAGGTTTCCGCTTCGGCTTGGGCTACGGTTTCATCTTGGGCCTTGGCTTCGGACGTTGGTTTCGGCTTGGGCTCCAGGTGGCTAATAATTTTGGAGCCGCCGGAGCTGCGTTCTTCTCATCTTCGTCGACGACGACGACGGCGACTCTCTGTAGTCTCCACTGCCATGGAGTGATTCATCCATGGAGGACGCGCGAAGTTGAGGAACCTGCTGCTGATTGGGACTGTTCCTTGCATCTTCCTCTTTGGATTTCTGGCACTGAGAAAGCTGTGATTGAAGAACACCTTGAAGAATGGACAAAACAGTTAGATGATAGCGGAGCTGATGTGTCCACACTAGCATCCACCTAG

Coding sequence (CDS)

ATGGGCCTAGGTTTCCGCTTCGGCTTGGGCTACGGTTTCATCTTGGGCCTTGGCTTCGGACGTTGGTTTCGGCTTGGGCTCCAGGTGGCTAATAATTTTGGAGCCGCCGGAGCTGCGTTCTTCTCATCTTCGTCGACGACGACGACGGCGACTCTCTGTAGTCTCCACTGCCATGGAGTGATTCATCCATGGAGGACGCGCGAAGTTGAGGAACCTGCTGCTGATTGGGACTGTTCCTTGCATCTTCCTCTTTGGATTTCTGGCACTGAGAAAGCTGTGATTGAAGAACACCTTGAAGAATGGACAAAACAGTTAGATGATAGCGGAGCTGATGTGTCCACACTAGCATCCACCTAG

Protein sequence

MGLGFRFGLGYGFILGLGFGRWFRLGLQVANNFGAAGAAFFSSSSTTTTATLCSLHCHGVIHPWRTREVEEPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST
Homology
[Close]
BLAST of MC08g_new0656 vs. NCBI nr
Match: XP_022158494.1 (uncharacterized protein C3F10.06c isoform X3 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.03e-20
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 110 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 157

[Close]
BLAST of MC08g_new0656 vs. NCBI nr
Match: XP_022158493.1 (uncharacterized protein C3F10.06c isoform X2 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.21e-20
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 160 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 207

[Close]
BLAST of MC08g_new0656 vs. NCBI nr
Match: XP_022158491.1 (uncharacterized protein C3F10.06c isoform X1 [Momordica charantia] >XP_022158492.1 uncharacterized protein C3F10.06c isoform X1 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.21e-20
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 160 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 207

[Close]
BLAST of MC08g_new0656 vs. NCBI nr
Match: XP_023545370.1 (uncharacterized protein C3F10.06c isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.50e-16
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 66  TREVEEPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 117
           T    E A +WDCSLHLPLW+S TEKA IEE LEEWTKQLDD GAD++TLAS
Sbjct: 40  TENGREAAVNWDCSLHLPLWVSQTEKAAIEERLEEWTKQLDDCGADIATLAS 91

[Close]
BLAST of MC08g_new0656 vs. NCBI nr
Match: XP_023545368.1 (uncharacterized protein C3F10.06c isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545369.1 uncharacterized protein C3F10.06c isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 2.01e-16
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 66  TREVEEPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 117
           T    E A +WDCSLHLPLW+S TEKA IEE LEEWTKQLDD GAD++TLAS
Sbjct: 155 TENGREAAVNWDCSLHLPLWVSQTEKAAIEERLEEWTKQLDDCGADIATLAS 206

[Close]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match: A0A6J1DZK5 (uncharacterized protein C3F10.06c isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024971 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.01e-21
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 110 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 157

[Close]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match: A0A6J1DW88 (uncharacterized protein C3F10.06c isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024971 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.87e-21
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 160 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 207

[Close]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match: A0A6J1DXD4 (uncharacterized protein C3F10.06c isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024971 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.88e-21
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 71  EPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAST 118
           +PAADWDCSLHLPLW+SGTEKA+IEEHLEEWTKQLDDS ADV+TLAST
Sbjct: 160 KPAADWDCSLHLPLWVSGTEKAMIEEHLEEWTKQLDDSRADVATLAST 207

[Close]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match: A0A1Q3D9F6 (Init_tRNA_PT domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32309 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.33e-16
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 62  HPWRTREVEEPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 117
           H   TREV     DWDCSLHLPLW+S TEKAVIE+ LEEWTKQLD+SGAD+++LAS
Sbjct: 155 HVGSTREV---FCDWDCSLHLPLWVSQTEKAVIEDRLEEWTKQLDESGADIASLAS 207

[Close]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match: A0A6J1KAY8 (uncharacterized protein C3F10.06c isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493823 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.59e-16
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 66  TREVEEPAADWDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 117
           T    E A +WDCSLHLPLW+S TEKA IEE LEEWT+QLDD GAD++TLAS
Sbjct: 40  TENGREAAVNWDCSLHLPLWVSRTEKAAIEERLEEWTEQLDDCGADIATLAS 91

[Close]
BLAST of MC08g_new0656 vs. TAIR 10
Match: AT2G40570.1 (initiator tRNA phosphoribosyl transferase family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 76  WDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 118
           WDCSLHLPLW+S TE+A IE  L+EWT++LD+SGAD+++LAS
Sbjct: 168 WDCSLHLPLWVSNTERASIEARLDEWTRELDESGADIASLAS 209

[Close]
BLAST of MC08g_new0656 vs. TAIR 10
Match: AT2G40570.2 (initiator tRNA phosphoribosyl transferase family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 76  WDCSLHLPLWISGTEKAVIEEHLEEWTKQLDDSGADVSTLAS 118
           WDCSLHLPLW+S TE+A IE  L+EWT++LD+SGAD+++LAS
Sbjct: 168 WDCSLHLPLWVSNTERASIEARLDEWTRELDESGADIASLAS 209

The following BLAST results are available for this feature:
BLAST of MC08g_new0656 vs.
Match NameE-valueIdentityDescription
BLAST of MC08g_new0656 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158494.11.03e-2089.58uncharacterized protein C3F10.06c isoform X3 [Momordica charantia][more]
XP_022158493.11.21e-2089.58uncharacterized protein C3F10.06c isoform X2 [Momordica charantia][more]
XP_022158491.11.21e-2089.58uncharacterized protein C3F10.06c isoform X1 [Momordica charantia] >XP_022158492... [more]
XP_023545370.11.50e-1673.08uncharacterized protein C3F10.06c isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023545368.12.01e-1673.08uncharacterized protein C3F10.06c isoform X1 [Cucurbita pepo subsp. pepo] >XP_02... [more]
BLAST of MC08g_new0656 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZK55.01e-2189.58uncharacterized protein C3F10.06c isoform X3 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1DW885.87e-2189.58uncharacterized protein C3F10.06c isoform X2 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1DXD45.88e-2189.58uncharacterized protein C3F10.06c isoform X1 OS=Momordica charantia OX=3673 GN=L... [more]
A0A1Q3D9F61.33e-1671.43Init_tRNA_PT domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFO... [more]
A0A6J1KAY82.59e-1671.15uncharacterized protein C3F10.06c isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of MC08g_new0656 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40570.11.2e-1369.05initiator tRNA phosphoribosyl transferase family protein [more]
AT2G40570.21.2e-1369.05initiator tRNA phosphoribosyl transferase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0656.1MC08g_new0656.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019988 charged-tRNA amino acid modification
molecular_function GO:0043399 tRNA A64-2'-O-ribosylphosphate transferase activity