MC08g_new0640 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0640
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC08: 33484107 .. 33485214 (-)
RNA-Seq Expression	MC08g_new0640
Synteny	MC08g_new0640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAGAAGAACTTGTTCTGTTGGGGCATCATAGTTAATGGACATGTAGAGGATAGTGACTATGAAGAGGCTTTCCTGCTCTTCTGTGAAATGCAACTGAAGGGGATCAAAGGCGATAAGGGTTAGTTTGCTGGTTGCTTGCAGCTATTTGGGAGAAAAGAGAAAATCGAGATGGATCTTGCATTAGGTACGGCGCTTGTTGACATGTATGCTAAATGTGGGAGCATAGAGAGTGCGACTAAGGTTTTCCAAGAACTTCCAGAGAAAGATGTTATGACTTGGACGGCTTTGATTCTTGGCTTTGCGATGTCTGGACTAGGAGAGAAGGCCTTGAAGTATTTCAACGAGATGCAGAAGAGTGAAGTATTTCAAAGTAATGTCTAATGTGTATGGAATTCAACCTGGAATTGAACACTATGGCTGTATGGTTGATTTATTAGGCAGAGTTGGTCGCATAGCTGAAGCAGAGGAGTTGATTCAGAATATGCCAATGGAAGCAGATCACTTTACTCTGGGAGGGCTTCTTGGTGCCTGCAGAACTGAGAAATCAGCCCAACAGCTTCTGAAACTTGATCCCAAGATGCTGGAACATAAGTTCTATCAAGTGGGAAGGATCTAAAAGGATCAGACCACTCATGGCAGAAAGAAAGTTGAATAAGCCCCCTGGTTGCAGCTTGATTGAGGTTAGTGGAGTGGTCCATCAATTTGGGAAGGGTGATTCTTCTCATCCTCAGTCAAGGGAAATCTATACGATGCTAGACGACATGATTAGTAAGTTGAAGGAAGCTGGCTACATTCCTGAGAAATCAGAAGTTCTGTTTGAGATGGATAAAGAAGAAAAGGTGACTGCTCTTAGCCTTCACTCGAATTGTGAAAAATCTTTGTGTTTGCACTGATTGCCACTCTGCTCTTAAGATCATCTCAAAGGTTTTACAAAAGAGAAATAGTTGTACGAGACCGCAATAGGTTTCACCATTTAAGAATGGATGTAGTTTTTGTGGAGATTTCTGGTGATCATTCATAAATATCAACACAGCAGAAGTTAAAGATTGCTGTTCAGTTTGACTCAAATATCAGTGGATTGTTTGAGGAGATTATGGAGTAG

mRNA sequence

ATGCCTCAGAAGAACTTGTTCTGTTGGGGCATCATAGTTAATGGACATGTAGAGGATAGTGACTATGAAGAGGCTTTCCTGCTCTTCTGTGAAATGCAACTGAAGGGGATCAAAGGCGATAAGGGCAGAGTTGGTCGCATAGCTGAAGCAGAGGAGTTGATTCAGAATATGCCAATGGAAGCAGATCACTTTACTCTGGGAGGGCTTCTTGGTGCCTGCAGAACTGAGAAATCAGCCCAACAGCTTCTGAAACTTGATCCCAAGATGCTGGAACATAACTTGATTGAGGTTAGTGGAGTGGTCCATCAATTTGGGAAGGGTGATTCTTCTCATCCTCAGTCAAGGGAAATCTATACGATGCTAGACGACATGATTAGTAAGTTGAAGGAAGCTGGCTACATTCCTGAGAAATCAGAAGTTCTGTTTGAGATGGATAAAGAAGAAAAGCAGAAGTTAAAGATTGCTGTTCAGTTTGACTCAAATATCAGTGGATTGTTTGAGGAGATTATGGAGTAG

Coding sequence (CDS)

ATGCCTCAGAAGAACTTGTTCTGTTGGGGCATCATAGTTAATGGACATGTAGAGGATAGTGACTATGAAGAGGCTTTCCTGCTCTTCTGTGAAATGCAACTGAAGGGGATCAAAGGCGATAAGGGCAGAGTTGGTCGCATAGCTGAAGCAGAGGAGTTGATTCAGAATATGCCAATGGAAGCAGATCACTTTACTCTGGGAGGGCTTCTTGGTGCCTGCAGAACTGAGAAATCAGCCCAACAGCTTCTGAAACTTGATCCCAAGATGCTGGAACATAACTTGATTGAGGTTAGTGGAGTGGTCCATCAATTTGGGAAGGGTGATTCTTCTCATCCTCAGTCAAGGGAAATCTATACGATGCTAGACGACATGATTAGTAAGTTGAAGGAAGCTGGCTACATTCCTGAGAAATCAGAAGTTCTGTTTGAGATGGATAAAGAAGAAAAGCAGAAGTTAAAGATTGCTGTTCAGTTTGACTCAAATATCAGTGGATTGTTTGAGGAGATTATGGAGTAG

Protein sequence

MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDKGRVGRIAEAEELIQNMPMEADHFTLGGLLGACRTEKSAQQLLKLDPKMLEHNLIEVSGVVHQFGKGDSSHPQSREIYTMLDDMISKLKEAGYIPEKSEVLFEMDKEEKQKLKIAVQFDSNISGLFEEIME

Homology

[Close]

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 52/161 (32.30%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACR-------TEKSAQQLLKLDP------- 101
           GR G I EAE  I +MPME D    G LL   R        E + ++L++LDP       
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408

Query: 102 ---------------KMLEHNL-------------IEVSGVVHQFGKGDSSHPQSREIYT 161
                          K + H +             +EV GVVH+F  GD S  +S  IY 
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468

[Close]

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 65/238 (27.31%), Postives = 96/238 (40.34%), Query Frame = 0


Query: 2   PQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKG------------------------- 61
           P K++  W  I++G+      EEA  +FCEM L G                         
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452

Query: 62  ---------IKGDK-------------GRVGRIAEAEELIQNMPMEADHFTLGGLLGACR 121
                    + G K             GR GR  EA E+I +M +E D    G LLGACR
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACR 512

Query: 122 T-------EKSAQQLLKLDP--------------------------KMLEHNLI------ 150
           T       E  A++L++++P                          K+++  L+      
Sbjct: 513 THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGC 572

[Close]

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-14
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRTEK-------SAQQLLKLDPK-----M 101
           GR G++ EA   IQ+M ME +    G LLGACR          +A +L +L P+     +
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 102 LEHNL------------------------------IEVSGVVHQFGKGDSSHPQSREIYT 151
           L  N+                              +EV+ ++H F  GD SHPQS EIY 
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576

[Close]

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot
Match: Q9ZVF4 (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 45/151 (29.80%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRT-------EKSAQQLLKLDP------- 101
           GR G + EA E I+ MP+E D    G LLGAC         +K A  L++  P       
Sbjct: 360 GRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHV 419

Query: 102 ----------------------------KMLEHNLIEVSGVVHQFGKGDSSHPQSREIYT 151
                                       K+  ++ +E  G +H F +GD SHPQS+ IY 
Sbjct: 420 LLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYE 479

[Close]

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRTEK-------SAQQLLKLDP------- 101
           GR G + EA+E I+ MP+E D  T G LL ACR  K       +A++LL L+P       
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 102 ----------------------------KMLEHNLIEVSGVVHQFGKGDSSHPQSREIYT 159
                                       K    + IEV   VH FG  D +HP+  EIY 
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYM 681

[Close]

BLAST of MC08g_new0640 vs. NCBI nr
Match: KAF3952064.1 (hypothetical protein CMV_022348 [Castanea mollissima])

HSP 1 Score: 149 bits (377), Expect = 2.31e-38
Identity = 111/339 (32.74%), Postives = 130/339 (38.35%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNL CW I++NGHVEDSDYEEA LLF EMQLKG+KGDK                   
Sbjct: 303 MPEKNLVCWNIMINGHVEDSDYEEALLLFREMQLKGVKGDKVTMVSLLLACSHLGALELG 362

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 363 KWLHAYIEKEKIEVDVALGTTLVDMYAKCGSIEIAMRVFQELPEKDVMTWTALIIGLAMC 422

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 423 GQGEKALEYFHEMQIGGVKPDAITFVGVLVACSYAGLVDEGISHFNLMSKTFGIQPSIEH 482

[Close]

BLAST of MC08g_new0640 vs. NCBI nr
Match: XP_034699399.1 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis riparia])

HSP 1 Score: 145 bits (365), Expect = 1.03e-36
Identity = 108/339 (31.86%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLFCW I++NGHVED DYEEA  LF EMQL G+KGDK                   
Sbjct: 299 MPEKNLFCWNIMINGHVEDGDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAIRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

[Close]

BLAST of MC08g_new0640 vs. NCBI nr
Match: XP_002281711.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Vitis vinifera] >RVX11149.1 Pentatricopeptide repeat-containing protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 143 bits (360), Expect = 5.02e-36
Identity = 108/339 (31.86%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLFCW I++NGHVEDSDYEEA  LF EMQL G+KGDK                   
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

[Close]

BLAST of MC08g_new0640 vs. NCBI nr
Match: XP_023897242.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Quercus suber] >XP_023908430.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Quercus suber])

HSP 1 Score: 142 bits (359), Expect = 7.04e-36
Identity = 111/339 (32.74%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNL CW I++NGHVEDSDYEEA LLF EMQLKGIKGDK                   
Sbjct: 305 MPEKNLVCWNIMINGHVEDSDYEEALLLFREMQLKGIKGDKVTMVSLLLACSHLGALELG 364

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 365 KWLHAYIGKEKIEVDVALGTALVDMYAKCGSIEIAMRVFQKLPEKDVMTWTALIVGLAMC 424

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 425 GQGEKALEYFHEMQIGGVKPDAITFVGVLVACSHAGLVDEGISHFNLMSKTFGIQPSIEH 484

[Close]

BLAST of MC08g_new0640 vs. NCBI nr
Match: PQQ20230.1 (pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora])

HSP 1 Score: 139 bits (349), Expect = 9.76e-36
Identity = 109/339 (32.15%), Postives = 127/339 (37.46%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLF W I++NGHVEDS+Y+EAFLLF EMQLKG KGDK                   
Sbjct: 1   MPEKNLFSWNIMINGHVEDSNYDEAFLLFREMQLKGEKGDKVTMVSLLLACSHLGALELG 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KWLHAYIEKEKIEVDVALGTTLVDMYAKCGSIDGASEVFRKLPEKDVMTWTALISGFAMC 120

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 121 GQGKKALEHFHEMQMSGVKPDAITFVGVLAACSHAGLVDEGISHFNSMHEVYGIQPSIEH 180

[Close]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL
Match: A0A2N9FQM1 (DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17414 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 4.47e-40
Identity = 113/339 (33.33%), Postives = 133/339 (39.23%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP++NL CW I++NGHVEDSDYEEA LLF EMQLKG+KGDK                   
Sbjct: 247 MPERNLVCWNIMINGHVEDSDYEEALLLFREMQLKGLKGDKVTMVSLLLACTHLGALELG 306

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 307 KWLHACIEKEKIEVDVALGTALVDMYAKCGSIDIAMRVFQELPEKDVMSWTALIVGLAMC 366

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 367 GEGEKALEYFHEMQIGGVKPDAITFVGVLVACSHAGFVDEGISHFNSMSKTFGIQPSIEH 426

[Close]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL
Match: A0A7N2L0N6 (DYW_deaminase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 143 bits (360), Expect = 1.92e-36
Identity = 110/339 (32.45%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNL CW I+ NGHVEDSDYEEA LLF EMQLKG+KGDK                   
Sbjct: 248 MPEKNLVCWNIMFNGHVEDSDYEEALLLFREMQLKGVKGDKVTMVSLLLACSHLGALELG 307

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 308 KWLHAYIGKEKIEVDVALGTALVDMYAKCGSIEIAVRVFQELPEKDVMTWTALIVGLAMC 367

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 368 GQGEKALEYFHEMQIGGVTPDAITFVGVLVACSHAGLVDEGISHFNLMSKTFGIQPSIEH 427

[Close]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL
Match: A0A438JQB5 (Pentatricopeptide repeat-containing protein, chloroplastic OS=Vitis vinifera OX=29760 GN=PCMP-H33_24 PE=3 SV=1)

HSP 1 Score: 143 bits (360), Expect = 2.43e-36
Identity = 108/339 (31.86%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLFCW I++NGHVEDSDYEEA  LF EMQL G+KGDK                   
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

[Close]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL
Match: F6HH59 (DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04640 PE=3 SV=1)

HSP 1 Score: 143 bits (360), Expect = 2.43e-36
Identity = 108/339 (31.86%), Postives = 129/339 (38.05%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLFCW I++NGHVEDSDYEEA  LF EMQL G+KGDK                   
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 358

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 359 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 418

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 419 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 478

[Close]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL
Match: A0A314ZNK1 (Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15876 PE=3 SV=1)

HSP 1 Score: 139 bits (349), Expect = 4.72e-36
Identity = 109/339 (32.15%), Postives = 127/339 (37.46%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKGIKGDK------------------- 60
           MP+KNLF W I++NGHVEDS+Y+EAFLLF EMQLKG KGDK                   
Sbjct: 1   MPEKNLFSWNIMINGHVEDSNYDEAFLLFREMQLKGEKGDKVTMVSLLLACSHLGALELG 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KWLHAYIEKEKIEVDVALGTTLVDMYAKCGSIDGASEVFRKLPEKDVMTWTALISGFAMC 120

Query: 121 ------------------------------------------------------------ 150
                                                                       
Sbjct: 121 GQGKKALEHFHEMQMSGVKPDAITFVGVLAACSHAGLVDEGISHFNSMHEVYGIQPSIEH 180

[Close]

BLAST of MC08g_new0640 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 65/238 (27.31%), Postives = 96/238 (40.34%), Query Frame = 0


Query: 2   PQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQLKG------------------------- 61
           P K++  W  I++G+      EEA  +FCEM L G                         
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452

Query: 62  ---------IKGDK-------------GRVGRIAEAEELIQNMPMEADHFTLGGLLGACR 121
                    + G K             GR GR  EA E+I +M +E D    G LLGACR
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACR 512

Query: 122 T-------EKSAQQLLKLDP--------------------------KMLEHNLI------ 150
           T       E  A++L++++P                          K+++  L+      
Sbjct: 513 THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGC 572

[Close]

BLAST of MC08g_new0640 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 52/161 (32.30%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACR-------TEKSAQQLLKLDP------- 101
           GR G I EAE  I +MPME D    G LL   R        E + ++L++LDP       
Sbjct: 349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 408

Query: 102 ---------------KMLEHNL-------------IEVSGVVHQFGKGDSSHPQSREIYT 161
                          K + H +             +EV GVVH+F  GD S  +S  IY 
Sbjct: 409 LLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 468

HSP 2 Score: 41.6 bits (96), Expect = 7.5e-04
Identity = 16/34 (47.06%), Postives = 23/34 (67.65%), Query Frame = 0


Query: 1   MPQKNLFCWGIIVNGHVEDSDYEEAFLLFCEMQL 35
           MP++N+  W  ++NG+V    Y+EA  LF EMQL
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQL 187

[Close]

BLAST of MC08g_new0640 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-15
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRTEK-------SAQQLLKLDPK-----M 101
           GR G++ EA   IQ+M ME +    G LLGACR          +A +L +L P+     +
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 102 LEHNL------------------------------IEVSGVVHQFGKGDSSHPQSREIYT 151
           L  N+                              +EV+ ++H F  GD SHPQS EIY 
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576

[Close]

BLAST of MC08g_new0640 vs. TAIR 10
Match: AT2G01510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 45/151 (29.80%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRT-------EKSAQQLLKLDP------- 101
           GR G + EA E I+ MP+E D    G LLGAC         +K A  L++  P       
Sbjct: 360 GRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHV 419

Query: 102 ----------------------------KMLEHNLIEVSGVVHQFGKGDSSHPQSREIYT 151
                                       K+  ++ +E  G +H F +GD SHPQS+ IY 
Sbjct: 420 LLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYE 479

[Close]

BLAST of MC08g_new0640 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 42  GRVGRIAEAEELIQNMPMEADHFTLGGLLGACRTEK-------SAQQLLKLDP------- 101
           GR G + EA+E I+ MP+E D  T G LL ACR  K       +A++LL L+P       
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 102 ----------------------------KMLEHNLIEVSGVVHQFGKGDSSHPQSREIYT 159
                                       K    + IEV   VH FG  D +HP+  EIY 
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYM 681

The following BLAST results are available for this feature:

BLAST of MC08g_new0640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q683I9	2.0e-14	32.30	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX...	[more]
Q56XI1	2.0e-14	27.31	Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop...	[more]
P0C899	4.6e-14	31.79	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
Q9ZVF4	2.3e-13	29.80	Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop...	[more]
Q9SHZ8	5.0e-13	29.70	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC08g_new0640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3952064.1	2.31e-38	32.74	hypothetical protein CMV_022348 [Castanea mollissima]	[more]
XP_034699399.1	1.03e-36	31.86	pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis...	[more]
XP_002281711.1	5.02e-36	31.86	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic ...	[more]
XP_023897242.1	7.04e-36	32.74	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Querc...	[more]
PQQ20230.1	9.76e-36	32.15	pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora]	[more]

BLAST of MC08g_new0640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9FQM1	4.47e-40	33.33	DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS...	[more]
A0A7N2L0N6	1.92e-36	32.45	DYW_deaminase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A438JQB5	2.43e-36	31.86	Pentatricopeptide repeat-containing protein, chloroplastic OS=Vitis vinifera OX=...	[more]
F6HH59	2.43e-36	31.86	DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_11s001...	[more]
A0A314ZNK1	4.72e-36	32.15	Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora O...	[more]

BLAST of MC08g_new0640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09410.1	1.5e-15	27.31	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G62890.1	1.5e-15	32.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49142.1	3.2e-15	31.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G01510.1	1.6e-14	29.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G22070.1	3.6e-14	29.70	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..153 e-value: 1.1E-7 score: 33.6
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 94..151 e-value: 2.9E-10 score: 40.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 8..40 e-value: 4.4E-6 score: 24.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 5..39 score: 8.966401
None	No IPR available	PANTHER	PTHR47928:SF46	SUBFAMILY NOT NAMED	coord: 1..41
None	No IPR available	PANTHER	PTHR47928:SF46	SUBFAMILY NOT NAMED	coord: 94..151 coord: 42..88
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 42..88 coord: 94..151
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0640.1	MC08g_new0640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding