MC08g_new0618 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0618
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 32618306 .. 32618633 (+)
RNA-Seq Expression	MC08g_new0618
Synteny	MC08g_new0618

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTCTTCTCCTTCTCATCTCCGAGGCTCAAGGTACAAACTTTTTCAACTTTCTCAAGATGGGGTTTGTTTGGTGAGAACAAAAAATTGAACTTTTTCTTCTCTTCTTAAGGGATTCGTTTGGAGAAAGGCGGGTTTAAAACAGCGGTTTCCGCAGCGAGAGATGGAGGAAATGGATTAGAGGCGATGAAGAGATCAAGAGCCCCAAACAAGGGCTCAAGAAAACCATATTCTCATTGGTTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAACCTAGGCACCATTAG

mRNA sequence

ATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTCTTCTCCTTCTCATCTCCGAGGCTCAAGGGATTCGTTTGGAGAAAGGCGGGTTTAAAACAGCGGTTTCCGCAGCGAGAGATGGAGGAAATGGATTAGAGGCGATGAAGAGATCAAGAGCCCCAAACAAGGGCTCAAGAAAACCATATTCTCATTGGTTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAACCTAGGCACCATTAG

Coding sequence (CDS)

ATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTCTTCTCCTTCTCATCTCCGAGGCTCAAGGGATTCGTTTGGAGAAAGGCGGGTTTAAAACAGCGGTTTCCGCAGCGAGAGATGGAGGAAATGGATTAGAGGCGATGAAGAGATCAAGAGCCCCAAACAAGGGCTCAAGAAAACCATATTCTCATTGGTTACCAGGCATTCAAGAAGATTACCATGGACCAAGAAGCCATAAACCTAGGCACCATTAG

Protein sequence

MKPSSMAVLLLLLLLISEAQGIRLEKGGFKTAVSAARDGGNGLEAMKRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH

Homology

[Close]

BLAST of MC08g_new0618 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 1.78e-13
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 1  MKPSSMAVLLLLLLLISEAQGIRLEKGGFKTAVSAARDGGNGLEAMKRSRAPNKGSRKPY 60
          MKPSSMAVLLL L+ ISEA+GIRL     + +    R+GG+ L  MK  RAPNK  RKPY
Sbjct: 1  MKPSSMAVLLLFLI-ISEAEGIRLLDK--RMSKEDKRNGGDLLGTMKW-RAPNKAWRKPY 60

Query: 61 SHWLPGIQEDYH 72
          SHWLPGIQEDYH
Sbjct: 61 SHWLPGIQEDYH 68

[Close]

BLAST of MC08g_new0618 vs. NCBI nr
Match: KAG6769267.1 (hypothetical protein POTOM_024887 [Populus tomentosa])

HSP 1 Score: 62.4 bits (150), Expect = 2.21e-10
Identity = 43/100 (43.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 1  MKPSSMAVLLLLLLLISEAQGIRLEKGGFKT------------AVSAARDGGNGLEAM-- 60
          M+PS +  LLLL  L+ +AQGIRLEKG FK             +   + DGG   EA+  
Sbjct: 1  MRPSVVVSLLLLSFLLQQAQGIRLEKG-FKQVGAQKVQAEKSPSKEKSNDGGVLGEAILC 60

Query: 61 ----KRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                 R     S+K   HWLP I EDY+GPR+HKP+HH
Sbjct: 61 KEGTMEKRVSKSVSKKFSHHWLPSIHEDYYGPRNHKPKHH 99

[Close]

BLAST of MC08g_new0618 vs. NCBI nr
Match: RQP03046.1 (hypothetical protein POPTR_018G119850 [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 7.41e-10
Identity = 40/106 (37.74%), Postives = 50/106 (47.17%), Query Frame = 0


Query: 1   MKPSSMAVLLLLLLLISEAQGIRLEKG----------GFKTAVSAARDGGN--------- 60
           M+PS +  LLLL  L+ EAQGIRLEKG          G K+++      G          
Sbjct: 1   MRPSLVVSLLLLSFLLQEAQGIRLEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCK 60

Query: 61  -----GLEAMKRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                G       R     S+    HWLP I EDY+GPR+HKP+HH
Sbjct: 61  EEHCIGTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

[Close]

BLAST of MC08g_new0618 vs. NCBI nr
Match: XP_024445403.1 (uncharacterized protein LOC112324937 [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 7.41e-10
Identity = 40/106 (37.74%), Postives = 50/106 (47.17%), Query Frame = 0


Query: 1   MKPSSMAVLLLLLLLISEAQGIRLEKG----------GFKTAVSAARDGGN--------- 60
           M+PS +  LLLL  L+ EAQGIRLEKG          G K+++      G          
Sbjct: 1   MRPSLVVSLLLLSFLLQEAQGIRLEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCK 60

Query: 61  -----GLEAMKRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                G       R     S+    HWLP I EDY+GPR+HKP+HH
Sbjct: 61  EEHCTGTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

[Close]

BLAST of MC08g_new0618 vs. NCBI nr
Match: KAB2023999.1 (hypothetical protein ES319_D06G057400v1 [Gossypium barbadense] >KAG4140981.1 hypothetical protein ERO13_D06G050300v2 [Gossypium hirsutum] >KJB64614.1 hypothetical protein B456_010G057200 [Gossypium raimondii] >TYI76183.1 hypothetical protein E1A91_D06G058600v1 [Gossypium mustelinum])

HSP 1 Score: 58.5 bits (140), Expect = 6.07e-09
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1  MKPSSMAVLLLLLLLI--SEAQGIRLEKGGFKTA------VSAARDGGNG----LEAMKR 60
          M+PS +AV LL+L +I  S  QGIRLEK  FK+A        A     NG    +   K+
Sbjct: 1  MRPSRLAVSLLVLFIIYLSSVQGIRLEKS-FKSAGHDPIQEGALMKNSNGAMGDILLCKQ 60

Query: 61 SRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                  RK + HWLP I EDY+GPR H+PRHH
Sbjct: 61 GHCTGTKKRKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.35e-20
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 6  MAVLLLLLLLISEAQGIRL-EKGGFKTAVSAA-----RDGGNGLEAMKRSRAPNKGSRKP 65
          MAVLLL L+++ +AQGIRL EKG  K    +      ++GG+ L  MK+ RAP +  RKP
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKK-RAPIRALRKP 60

Query: 66 YSHWLPGIQEDYHGPRSHKPRHH 82
          YSHWLPGIQEDYHGPRSHK RHH
Sbjct: 61 YSHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL
Match: A0A6M2ES64 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.05e-11
Identity = 43/102 (42.16%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 1   MKPSSMAVLLLLLLLISEAQGIRLEKG----------GFKTAVSAARDGGNGLEAM---- 60
           M+PS +A LLLL  L+ +AQGIRLEKG            K+      DGG   EA+    
Sbjct: 1   MRPSVVASLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKEKSDGGVLGEAILCKE 60

Query: 61  ------KRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                    R     S+K   HWLP I EDY+GPR+HKP HH
Sbjct: 61  GQCTGTMEKRVSKSVSKKSSHHWLPSIHEDYYGPRNHKPNHH 102

[Close]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL
Match: A0A3N7G9N2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G119850 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.59e-10
Identity = 40/106 (37.74%), Postives = 50/106 (47.17%), Query Frame = 0


Query: 1   MKPSSMAVLLLLLLLISEAQGIRLEKG----------GFKTAVSAARDGGN--------- 60
           M+PS +  LLLL  L+ EAQGIRLEKG          G K+++      G          
Sbjct: 1   MRPSLVVSLLLLSFLLQEAQGIRLEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCK 60

Query: 61  -----GLEAMKRSRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                G       R     S+    HWLP I EDY+GPR+HKP+HH
Sbjct: 61  EEHCIGTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

[Close]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL
Match: A0A0D2U6Z9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.94e-09
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1  MKPSSMAVLLLLLLLI--SEAQGIRLEKGGFKTA------VSAARDGGNG----LEAMKR 60
          M+PS +AV LL+L +I  S  QGIRLEK  FK+A        A     NG    +   K+
Sbjct: 1  MRPSRLAVSLLVLFIIYLSSVQGIRLEKS-FKSAGHDPIQEGALMKNSNGAMGDILLCKQ 60

Query: 61 SRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                  RK + HWLP I EDY+GPR H+PRHH
Sbjct: 61 GHCTGTKKRKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL
Match: A0A5J5R1K5 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D06G057400v1 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.94e-09
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1  MKPSSMAVLLLLLLLI--SEAQGIRLEKGGFKTA------VSAARDGGNG----LEAMKR 60
          M+PS +AV LL+L +I  S  QGIRLEK  FK+A        A     NG    +   K+
Sbjct: 1  MRPSRLAVSLLVLFIIYLSSVQGIRLEKS-FKSAGHDPIQEGALMKNSNGAMGDILLCKQ 60

Query: 61 SRAPNKGSRKPYSHWLPGIQEDYHGPRSHKPRHH 82
                  RK + HWLP I EDY+GPR H+PRHH
Sbjct: 61 GHCTGTKKRKSH-HWLPSIHEDYYGPRKHRPRHH 92

The following BLAST results are available for this feature:

BLAST of MC08g_new0618 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0618 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586348.1	1.78e-13	65.28	Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ...	[more]
KAG6769267.1	2.21e-10	43.00	hypothetical protein POTOM_024887 [Populus tomentosa]	[more]
RQP03046.1	7.41e-10	37.74	hypothetical protein POPTR_018G119850 [Populus trichocarpa]	[more]
XP_024445403.1	7.41e-10	37.74	uncharacterized protein LOC112324937 [Populus trichocarpa]	[more]
KAB2023999.1	6.07e-09	44.68	hypothetical protein ES319_D06G057400v1 [Gossypium barbadense] >KAG4140981.1 hyp...	[more]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ48	5.35e-20	60.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1	[more]
A0A6M2ES64	4.05e-11	42.16	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A3N7G9N2	3.59e-10	37.74	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G119850 PE=4 ...	[more]
A0A0D2U6Z9	2.94e-09	44.68	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 ...	[more]
A0A5J5R1K5	2.94e-09	44.68	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D06G057400v1 PE...	[more]

BLAST of MC08g_new0618 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0618.1	MC08g_new0618.1	mRNA