MC08g_new0612 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0612
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 32035244 .. 32035498 (-)
RNA-Seq Expression	MC08g_new0612
Synteny	MC08g_new0612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCACAAGAGAGAGAGAGGGGGGTACCTGAAATTTGAAGTAGCAATGTGGATCCAAGAGATTGAGGAAAATGTAGTAGATGAAGAAGAAAACAGGGTTGAGACTGAGAGAGTTACAGAGGAGAGAGGGAACGACACCGTTTCCCCAGCAGAAGGAGGACAAACAGAAGCAGAAGCTGAAGGGGAAGGAGATGGGGAAAGGCCTTCTCCATTGTTGGGTTTTTGTGTTATCAGAGTTTCAGAAAGAAAGTAA

mRNA sequence

ATGCACCACAAGAGAGAGAGAGGGGGGTACCTGAAATTTGAAGTAGCAATGTGGATCCAAGAGATTGAGGAAAATGTAGTAGATGAAGAAGAAAACAGGGTTGAGACTGAGAGAGTTACAGAGGAGAGAGGGAACGACACCGTTTCCCCAGCAGAAGGAGGACAAACAGAAGCAGAAGCTGAAGGGGAAGGAGATGGGGAAAGGCCTTCTCCATTGTTGGGTTTTTGTGTTATCAGAGTTTCAGAAAGAAAGTAA

Coding sequence (CDS)

ATGCACCACAAGAGAGAGAGAGGGGGGTACCTGAAATTTGAAGTAGCAATGTGGATCCAAGAGATTGAGGAAAATGTAGTAGATGAAGAAGAAAACAGGGTTGAGACTGAGAGAGTTACAGAGGAGAGAGGGAACGACACCGTTTCCCCAGCAGAAGGAGGACAAACAGAAGCAGAAGCTGAAGGGGAAGGAGATGGGGAAAGGCCTTCTCCATTGTTGGGTTTTTGTGTTATCAGAGTTTCAGAAAGAAAGTAA

Protein sequence

MHHKRERGGYLKFEVAMWIQEIEENVVDEEENRVETERVTEERGNDTVSPAEGGQTEAEAEGEGDGERPSPLLGFCVIRVSERK

Homology

[Close]

BLAST of MC08g_new0612 vs. NCBI nr
Match: KGN60824.1 (hypothetical protein Csa_019365 [Cucumis sativus])

HSP 1 Score: 47.4 bits (111), Expect = 7.52e-05
Identity = 29/47 (61.70%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 38 RVTEERGNDTVSPAEGGQTEAEAEGEGDGERPSPLLGFCVIRVSERK 84
          RVT+E  NDTV   EG QTEAEAE E D E  SPLLGF      ERK
Sbjct: 14 RVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60

[Close]

BLAST of MC08g_new0612 vs. ExPASy TrEMBL
Match: A0A0A0LIE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.64e-05
Identity = 29/47 (61.70%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 38 RVTEERGNDTVSPAEGGQTEAEAEGEGDGERPSPLLGFCVIRVSERK 84
          RVT+E  NDTV   EG QTEAEAE E D E  SPLLGF      ERK
Sbjct: 14 RVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60

The following BLAST results are available for this feature:

BLAST of MC08g_new0612 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0612 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60824.1	7.52e-05	61.70	hypothetical protein Csa_019365 [Cucumis sativus]	[more]

BLAST of MC08g_new0612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE9	3.64e-05	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1	[more]

BLAST of MC08g_new0612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0612.1	MC08g_new0612.1	mRNA