MC08g_new0602 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0602
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 31605059 .. 31605577 (-)
RNA-Seq Expression	MC08g_new0602
Synteny	MC08g_new0602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATATTGCAGAGATAATCCGAAGCATAAAAAGAGAGGGGGGAGGGAAAAGGGGGTGAAAATTACAGAGAAAATCGACGATGAGGCGGCCATCGCAGTATCTGCCGGAGGGGGTTCCCAAGAAGCGGTGGCCATAGGGGGGGTAGATGGTCTCAAAGGCGGCGCCGACGAGGCAGCCGGTGTCGGAGTTGGAGTCTCCGAAGTTGAAAACAGCCGGGAGAGAGAAATGGATGGATCTGGATATGGGGAGGCAGAGGAGGAAGAAGGCGAGGATGTGGAAAGCGGCCATGGGGGGCGGTGGATGAGAATGGGGACCGGCATTGGGATTATATGGGTAAGTGTAGAAGAAGAAATGGGCGTAGAAGCCATGGTTGGTAATGGTAATGGTGGGTCACTCTGTAGCAAGCAAAAAGACAGAGGAACCAACGGACAAAGCAACTGTGAAGGCAAAGCATATCGCTGTGCCTGTGACTTCATTTTCAATGTTTTCTTTTTAATTACAATGTATGGGTGGTGA

mRNA sequence

ATGGGATATTGCAGAGATAATCCGAAGCATAAAAAGAGAGGGGGGAGGGAAAAGGGGGTGAAAATTACAGAGAAAATCGACGATGAGGCGGCCATCGCAGTATCTGCCGGAGGGGGTTCCCAAGAAGCGGTGGCCATAGGGGGGGTAGATGGTCTCAAAGGCGGCGCCGACGAGGCAGCCGGTGTCGGAGTTGGAGTCTCCGAAGTTGAAAACAGCCGGGAGAGAGAAATGGATGGATCTGGATATGGGGAGGCAGAGGAGGAAGAAGGCGAGGATGTGGAAAGCGGCCATGGGGGGCGGTGGATGAGAATGGGGACCGGCATTGGGATTATATGGGTAAGTGTAGAAGAAGAAATGGGCGTAGAAGCCATGGTTGGTAATGGTAATGGTGGGTCACTCTGTAGCAAGCAAAAAGACAGAGGAACCAACGGACAAAGCAACTGTGAAGGCAAAGCATATCGCTGTGCCTGTGACTTCATTTTCAATGTTTTCTTTTTAATTACAATGTATGGGTGGTGA

Coding sequence (CDS)

ATGGGATATTGCAGAGATAATCCGAAGCATAAAAAGAGAGGGGGGAGGGAAAAGGGGGTGAAAATTACAGAGAAAATCGACGATGAGGCGGCCATCGCAGTATCTGCCGGAGGGGGTTCCCAAGAAGCGGTGGCCATAGGGGGGGTAGATGGTCTCAAAGGCGGCGCCGACGAGGCAGCCGGTGTCGGAGTTGGAGTCTCCGAAGTTGAAAACAGCCGGGAGAGAGAAATGGATGGATCTGGATATGGGGAGGCAGAGGAGGAAGAAGGCGAGGATGTGGAAAGCGGCCATGGGGGGCGGTGGATGAGAATGGGGACCGGCATTGGGATTATATGGGTAAGTGTAGAAGAAGAAATGGGCGTAGAAGCCATGGTTGGTAATGGTAATGGTGGGTCACTCTGTAGCAAGCAAAAAGACAGAGGAACCAACGGACAAAGCAACTGTGAAGGCAAAGCATATCGCTGTGCCTGTGACTTCATTTTCAATGTTTTCTTTTTAATTACAATGTATGGGTGGTGA

Protein sequence

MGYCRDNPKHKKRGGREKGVKITEKIDDEAAIAVSAGGGSQEAVAIGGVDGLKGGADEAAGVGVGVSEVENSREREMDGSGYGEAEEEEGEDVESGHGGRWMRMGTGIGIIWVSVEEEMGVEAMVGNGNGGSLCSKQKDRGTNGQSNCEGKAYRCACDFIFNVFFLITMYGW

Homology

[Close]

BLAST of MC08g_new0602 vs. NCBI nr
Match: RRT82533.1 (hypothetical protein B296_00015262 [Ensete ventricosum])

HSP 1 Score: 50.8 bits (120), Expect = 3.83e-05
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 18 KGVKITEKIDDEAAIAVSAGGGSQEAVAIGGVDGLKGGADEAAGVGVGVSEVENSRE 74
          K   IT ++DDEAAI VS  G  +E +A+G  DG +GG  +AAGVGVGV+E+E+ RE
Sbjct: 3  KETMITGEVDDEAAIGVSPNGHLEEGLAVGPGDGAEGGR-QAAGVGVGVAEIEDGRE 58

[Close]

BLAST of MC08g_new0602 vs. ExPASy TrEMBL
Match: A0A427B236 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00015262 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.85e-05
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 18 KGVKITEKIDDEAAIAVSAGGGSQEAVAIGGVDGLKGGADEAAGVGVGVSEVENSRE 74
          K   IT ++DDEAAI VS  G  +E +A+G  DG +GG  +AAGVGVGV+E+E+ RE
Sbjct: 3  KETMITGEVDDEAAIGVSPNGHLEEGLAVGPGDGAEGGR-QAAGVGVGVAEIEDGRE 58

The following BLAST results are available for this feature:

BLAST of MC08g_new0602 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0602 vs. NCBI nr


Match Name	E-value	Identity	Description
RRT82533.1	3.83e-05	54.39	hypothetical protein B296_00015262 [Ensete ventricosum]	[more]

BLAST of MC08g_new0602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A427B236	1.85e-05	54.39	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00015262 PE=4 SV=1	[more]

BLAST of MC08g_new0602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0602.1	MC08g_new0602.1	mRNA