MC08g_new0586 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0586
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	GDSL esterase/lipase At5g03980-like
Location	MC08: 31075684 .. 31076034 (-)
RNA-Seq Expression	MC08g_new0586
Synteny	MC08g_new0586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACTACCGCCGATCAACGCCGACCACCGGTGTCCGGCACCACTGCCGTTTCAGAATATACCGACGACCGCTCCACGCCCACAACCACTGGCGACCACGACGACCCTCTGGTCATTTCAGATCCGAAATAAATTTGGTTCAAGATCTGAAAAGAATGTTCAGTTTCAGATCTGAACAACGATATGTAGGTGCGAAGAATGATGGTAAAAATAAGGGTAAATGAAGGCGTGGATTTTCAGCGCAGTGGCAAACTTATGCCGGAGATGAAGAAGAAGAGAGGAAGGAGAAGAAAAGAGAGAGAAAATTCGTTGGCGCTGAGTGGTCGCCGGTATATTCTAAAATGGTAG

mRNA sequence

ATGCTGACTACCGCCGATCAACGCCGACCACCGGTGTCCGGCACCACTGCCGTTTCAGAATATACCGACGACCGCTCCACGCCCACAACCACTGGCGACCACGACGACCCTCTGGTGCGAAGAATGATGGTAAAAATAAGGGTAAATGAAGGCGTGGATTTTCAGCGCAGTGGCAAACTTATGCCGGAGATGAAGAAGAAGAGAGGAAGGAGAAGAAAAGAGAGAGAAAATTCGTTGGCGCTGAGTGGTCGCCGGTATATTCTAAAATGGTAG

Coding sequence (CDS)

ATGCTGACTACCGCCGATCAACGCCGACCACCGGTGTCCGGCACCACTGCCGTTTCAGAATATACCGACGACCGCTCCACGCCCACAACCACTGGCGACCACGACGACCCTCTGGTGCGAAGAATGATGGTAAAAATAAGGGTAAATGAAGGCGTGGATTTTCAGCGCAGTGGCAAACTTATGCCGGAGATGAAGAAGAAGAGAGGAAGGAGAAGAAAAGAGAGAGAAAATTCGTTGGCGCTGAGTGGTCGCCGGTATATTCTAAAATGGTAG

Protein sequence

MLTTADQRRPPVSGTTAVSEYTDDRSTPTTTGDHDDPLVRRMMVKIRVNEGVDFQRSGKLMPEMKKKRGRRRKERENSLALSGRRYILKW

Homology

[Close]

BLAST of MC08g_new0586 vs. NCBI nr
Match: XP_022150750.1 (GDSL esterase/lipase At5g03980-like [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.65e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 5   ADQRRPPVSGTTAVSEYTDDRSTPTTTGDHDD 36
           ADQRRPPVSGTTAVSEYT DRSTPTTTGDHDD
Sbjct: 368 ADQRRPPVSGTTAVSEYTGDRSTPTTTGDHDD 399

[Close]

BLAST of MC08g_new0586 vs. ExPASy TrEMBL
Match: A0A6J1D9D2 (GDSL esterase/lipase At5g03980-like OS=Momordica charantia OX=3673 GN=LOC111018809 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.77e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 5   ADQRRPPVSGTTAVSEYTDDRSTPTTTGDHDD 36
           ADQRRPPVSGTTAVSEYT DRSTPTTTGDHDD
Sbjct: 368 ADQRRPPVSGTTAVSEYTGDRSTPTTTGDHDD 399

The following BLAST results are available for this feature:

BLAST of MC08g_new0586 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150750.1	3.65e-09	96.88	GDSL esterase/lipase At5g03980-like [Momordica charantia]	[more]

BLAST of MC08g_new0586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9D2	1.77e-09	96.88	GDSL esterase/lipase At5g03980-like OS=Momordica charantia OX=3673 GN=LOC1110188...	[more]

BLAST of MC08g_new0586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0586.1	MC08g_new0586.1	mRNA