MC08g_new0460 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0460
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptioncondensin-2 complex subunit D3
LocationMC08: 22617184 .. 22621577 (+)
RNA-Seq ExpressionMC08g_new0460
SyntenyMC08g_new0460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAGTGTTTAATTAGATATTTAAAGTTAGAAAATTGGAGATTAGTTGGAGTTTTTAAATTTGGGGGTTAAACAGGATTAAAAAAAAGAAAAACCTAACTCTACCTCTCTCCCCCGACTCCTCTCTCCCTTAGCCTATCTTCTCCCTTAAAAAAAAGCCCTAAGTCGTTTTCGTCTCCCACAAACCCCGTGATTTTTCTCTACAGCCTTCCCCTTCCCCAGGGTCGTCGTCGTGCCTCACCCCGTTGCCGCACCTCACCCCATAGCCATGCCTCACCGTCGCCCATCGCCCAAGCACGGCCGCTCCGTCCGTTGCTCGCCGCTCCTCGCCGTCAATTTGTGAGGTAAATATCTTCTTTAAACATTGTTCCTCTTCCTTTAATTTTAGATTTTGGTCAGTGTGATGCAAAAAGATGCACCGGACGCAAGCTTGTACTATTTGGCTTGCTAAAAGAAAGTACCTAATTCTCTCATTTTCTTTTATTCTTCTCATATTTTTATATATGTTGCTCCTTTTGCATATTAGTTTGTTTATGTAGCGATATCACTGAAGAATTAGTTGGTTTTATATGTTCTATCCACTCTCTCCTTCATTATTGATCATAAAAAATGGCTTGTTAAATGCATTGGTTTTGTTTTACATGGCAGTGCAGGAGGAATTCTAAAGATACGTTTCAATGTGATGATTAGTGAAAGGAATACGGTGATTTGGGAATGGAAGTCGAGAAAAATAAGTTGTATTGTGTTTGCTTGCTAAAGGAAGTATAATGTTAGATGGTTATGTTTCGTTAGTGGGGAGCTTCAATTATAATTTCTAAGTTTGGTCTTACAATGCTTCATAAAAGTTCAAATTAGAAAAGAAGCAATCTAAAGTTCTTTTGAGCGAGAATCCTTGAAACTCTTAACATAGTTTCTAATTGTTTCCTTTTATTAGTTGGAATTAGTACTATTCGAGGGTTGGAGTTGTGCAGAATGATACATTATTAAAATAAATGGTGGAGGATGTTTTGCTTTGCCCCTTTTTGGGATAGAGTGACCCAGTTGTGGCAAGCTTGTTTTTTTTTTTGTAAATTTTTCGGGTATTTGGATTGAGATGAGATGAGTAGTAGAATTTTTCGGGTAGGGTTGGAGTTGTGCAAGATGATACATTATTAAAATAAATGGTGGAGGATGTTTTTCTTTGCCCCTTTTTGGGATAGAGTGACCCAGTTGTGGCAAGCTTGTTTTTTTTGCAAATTTTTTGGGTATTTGGATTGAGATGAGATGAGTAGTAGAATTTTTCGGGTGGAGAGGTTTGGGAGGAATTTGGGATTTAGTTAGATTTAATACCTCTTTATGGATGTCAGTTTCTAAAGCCCTTTGTAACTACGAGTTGAGTGTTATTCTTTTGGATTGAGATCCTTTCTTGTAGGTCGTTACCATTTTGTTGGGCTTGGTTGTTGTATTCATTTTATATATTCTTTCATGTTTCTCAATGATAGTTTGGTTTCTTCTCAAAAGAAGGAAAAAAAAACTGAAGCAACATTTGAAGCACATTCAAAGCATCTACATGAGAACTATTTACAATTCCGTGAGTTCAAGTTAGTTTCTTGAGAGTGGAAAGCTGTCTTTGTTCTTTCGTCTTCAAATCATTTCTTTTAAAGGACTCTGTGGGTGGGAGGGGTGGTGGAGGTATACCTTAACTTCTAATTTTCGATTGTATCCTATAGAAATGAAATGAGAAATCGATTGTCTTAGCATCGTTTTTCTCCATGGAAGTGGGGGAATAAGGATGGCCGGATGGGGGAATAGTGGATTCAATAATGGAGGTTGTTAAAATGATGGAATTCAAGGATCAAATCGGGTTTGTGGATTATGTAGTGAAGATGACACAAGGGAAGTCTAATCTCAGACTGTTAGCTGTTAATCTTATCACATTCCAGGTGATTATTTATTTTGTTACTTCTTACTCCTGGTTGCTATTCTCTAACGGATGTATTTCCCCAATGGCACGATTTTTGGTTGTATTTAAGTTACGGTAGGGGTTCTTTGCATTTATGCTATTCTCTAATTGTAAAAAATTAATAGGTATCATTACTAAGATATTTTTTTATTTCATTTGAGTTGATGAACTCCAAAAATGAGCTTATGTAGTTTGTTTTATAGAACACGTCCAGTTTCATGTAAATTTGTGTTGGTATTCTTCCTCTTGTTGCTAATGGAAGAATAAAAACATGAAAATTCGAGAGCCAAGAAGAGATAAATTCTGGATCGTGTAATTTGACGAGGATTCGTAGGTAGACGTTAATGTCGCATCAAAATGTTATGTGGCGTAATTTGAACTTTTTAAAGCTGATGGACTAAAGACATACATGATATTCACAAAAGCACGAAGATTAAGGAATGAAAATTATTTTTTGTCAGTTGGATGGTTATTGAAGCATCAAACAAGATCAAGGTATGTGTAGTGGAGTTTTTTAGAATTTTGGAAAAAAAAAATTAGTAAAACATTATGCTTGTTGACATGGTGTACTAACTACCAGGATATTGACAAGTTTTTATGGCAACAAATCAGATTGACATTCTTGATCAGCCTCTTCTCAGACCTAGATGAATTTATGGAAAAATTGAGTTCTCAAATCTAAATGAGGAGGTACGTAACTGTGTTAAACATCCTGGTTCAACTATTTTACTCTCTCACATTTTGAAGTTGGGGCTTTAACTAGATTTTTTCTCAAGATATTTTTGTTGAAATATGGAATCAAAACTTATTTTTATGAGTAATATGTTTGATCAAACTTAAATAGAATCGAGTTTTTGTAGCGGTAGAGTATGCATTTTATTGAGTTCTAGTTCTTCTAGCTTCTAAGATATAATTCTTGCAGGTTCTTCTTTAGTGAACTTTTTCTTTTGCTCTTGTATCTCTGCATGTGGTAGAAAGCTCATCATTTGAAAGTCATGAAATCCAAAAAAGATCAAGTAACTAGGTCTTTTCTTGTTATTATATTTGCTTCCCTGATCTTGTGGTCGTTCTTTCAAGAGTTTGAACCAACTACTTAAAAGGAAAAGTTGGAGATAGAGGAACTTTTCGACACGACACAAAGAACTACCATTAGATGTGAGTCAGGTTACACACTCACCATCACATCCGTTGTTTAGAAAGCATATAAAGTTGGACTTTCACTATGCCCAGGTTGGTTTTCAGCCTTATCTTTATTTTTGTACTCAAAATTTTAGCTTCACCTTTATATATATGTAGTTTGATGTTATAGTTAAAGAGGTAATGATCAGGTTAGTTAGTTTGATGTTATAGTTAAAGAGGTAATGATCAGGTTAGTTAGATATATATATGTTAGTTAGATGTTGTAATTTTTCATGTTTTGGTGCTCACTTATTTTTGGACTATTAGCTAAGCCTACTTCTCATCCATCTTTAATGCTTAATGGGACTGTTGGTTTGTTCATCTGGTGAAGTGCATATAAAAATTTGCTTATGTTTCTGACTTATAAGTACATCAATTTTAGTAAATAGTTAATACTTTGTGTGTTCACTGTTAAATATAATTTTTTTATTAGATTGTTTTCTTTCAACTCTGATACATTTTGAAGTCTAGACTAATAAGTTTGAGTATGTAGCTGAGCGTATAGCTGTTTTGCACATGAACTTTTATTAGATTGTTTTCTTTCAACTATGATACATTTTGAAGTCTAGACTAATAAGTTTGAGTATGTAGCTGAGCGTATAGCTGTTTTGCACATGAACTTCATGAAAATGAATTATATGTGTCATGCATATAATATAAAGTCTAAAGTCTAGTTGGATAATTGTGTGGCTATCCTGCAGCAAAGATAGCCAATTAAGACTTGGAGTTTATATGTGTCATTACGTAATGCATGTTGGACTTAGAAAGAAAATGGGGGAGTTAATATTAATATTTTCTTAACTGTTCGTTTTATTTTGTTGAATGAATAGCTTGTGGGAGCAACATTTTGAGAAATGAGAATGTACAGGGAAGAGTTTCGGCGTATTTTTTCGACATGTACAAGGTTGATGTAATGTGAATATAGTTCATTGGGCATTATCTTATTGTAGTCATAGACTTATAGTATAGTATTTGTATAAAATATCCTAATGTACAAATTTAATCAGACTTTGATCTTATTATACGCAACTTGGTTACATTTGTCGCAACGTGATCGCGACGCGGAACGACCGACGTCCTCTTTTAAGAGTCTTAAATAAAGAATTTTGAAGTCGCCACCAATCATGTTGAGGGTGTGATTGGTCACCCAATTAGAATAAAAAACAAATTGGTCTGCATAATTTAGATCGAGTTCGGGAGTCACTTGTGTGTAGGGATGGTGTTAGCACCCTACAACACCCGAGAAAACGATTGTCAGTATTTTATTTTTTAT

mRNA sequence

ATGGAGGTTGTTAAAATGATGGAATTCAAGGATCAAATCGGGTTTGTGGATTATGTAGTGAAGATGACACAAGGGAAGTCTAATCTCAGACTGTTAGCTGTTAATCTTATCACATTCCAGGTGATTATTTATTTTGTTACTTCTTACTCCTGGTTGCTATTCTCTAACGGATGTATTTCCCCAATGGCACGATTTTTGGTTGTATTTAAGTTACGGTAG

Coding sequence (CDS)

ATGGAGGTTGTTAAAATGATGGAATTCAAGGATCAAATCGGGTTTGTGGATTATGTAGTGAAGATGACACAAGGGAAGTCTAATCTCAGACTGTTAGCTGTTAATCTTATCACATTCCAGGTGATTATTTATTTTGTTACTTCTTACTCCTGGTTGCTATTCTCTAACGGATGTATTTCCCCAATGGCACGATTTTTGGTTGTATTTAAGTTACGGTAG

Protein sequence

MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLITFQVIIYFVTSYSWLLFSNGCISPMARFLVVFKLR
Homology
[Close]
BLAST of MC08g_new0460 vs. NCBI nr
Match: XP_022138761.1 (condensin-2 complex subunit D3 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.15e-10
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLITFQV 41
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLAV+LI+  +
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLAVDLISMLI 366

[Close]
BLAST of MC08g_new0460 vs. NCBI nr
Match: XP_023006293.1 (condensin-2 complex subunit D3 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 2.15e-10
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA++LI+
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLAIDLIS 363

[Close]
BLAST of MC08g_new0460 vs. NCBI nr
Match: XP_022959486.1 (condensin-2 complex subunit D3 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 1.02e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA +LI+
Sbjct: 321 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLASDLIS 358

[Close]
BLAST of MC08g_new0460 vs. NCBI nr
Match: XP_023547430.1 (condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 1.02e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA +LI+
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLASDLIS 363

[Close]
BLAST of MC08g_new0460 vs. NCBI nr
Match: KAG7013645.1 (Condensin-2 complex subunit D3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 1.02e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA +LI+
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLASDLIS 363

[Close]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match: A0A6J1CAM9 (condensin-2 complex subunit D3 OS=Momordica charantia OX=3673 GN=LOC111009846 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.57e-11
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLITFQV 41
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLAV+LI+  +
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLAVDLISMLI 366

[Close]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match: A0A6J1L4I0 (condensin-2 complex subunit D3 OS=Cucurbita maxima OX=3661 GN=LOC111499074 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.04e-10
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA++LI+
Sbjct: 326 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLAIDLIS 363

[Close]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match: A0A6J1H4Z7 (condensin-2 complex subunit D3 OS=Cucurbita moschata OX=3662 GN=LOC111460444 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.96e-10
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLIT 38
           MEVVK+MEFKDQIGFVDYVVKMT+GKSNLRLLA +LI+
Sbjct: 321 MEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLASDLIS 358

[Close]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match: A0A2I4DSZ1 (condensin-2 complex subunit D3 isoform X2 OS=Juglans regia OX=51240 GN=LOC108983157 PE=4 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.73e-09
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLI 37
           ME+VK+MEF DQIGFV+YVVKMTQGK+NLRLLAV+LI
Sbjct: 325 MEIVKVMEFSDQIGFVEYVVKMTQGKANLRLLAVDLI 361

[Close]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match: A0A2I4DSX7 (condensin-2 complex subunit D3 isoform X1 OS=Juglans regia OX=51240 GN=LOC108983157 PE=4 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.73e-09
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLI 37
           ME+VK+MEF DQIGFV+YVVKMTQGK+NLRLLAV+LI
Sbjct: 325 MEIVKVMEFSDQIGFVEYVVKMTQGKANLRLLAVDLI 361

[Close]
BLAST of MC08g_new0460 vs. TAIR 10
Match: AT4G15890.1 (binding )

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   MEVVKMMEFKDQIGFVDYVVKMTQGKSNLRLLAVNLI 38
           +E+VK ME + Q  FVD+V+KM QGKSN R+LAV++I
Sbjct: 302 LEIVKAMEVEGQSEFVDFVMKMCQGKSNFRVLAVDII 338

The following BLAST results are available for this feature:
BLAST of MC08g_new0460 vs.
Match NameE-valueIdentityDescription
BLAST of MC08g_new0460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138761.11.15e-1082.93condensin-2 complex subunit D3 [Momordica charantia][more]
XP_023006293.12.15e-1086.84condensin-2 complex subunit D3 [Cucurbita maxima][more]
XP_022959486.11.02e-0986.84condensin-2 complex subunit D3 [Cucurbita moschata][more]
XP_023547430.11.02e-0986.84condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo][more]
KAG7013645.11.02e-0986.84Condensin-2 complex subunit D3 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of MC08g_new0460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CAM95.57e-1182.93condensin-2 complex subunit D3 OS=Momordica charantia OX=3673 GN=LOC111009846 PE... [more]
A0A6J1L4I01.04e-1086.84condensin-2 complex subunit D3 OS=Cucurbita maxima OX=3661 GN=LOC111499074 PE=4 ... [more]
A0A6J1H4Z74.96e-1086.84condensin-2 complex subunit D3 OS=Cucurbita moschata OX=3662 GN=LOC111460444 PE=... [more]
A0A2I4DSZ11.73e-0983.78condensin-2 complex subunit D3 isoform X2 OS=Juglans regia OX=51240 GN=LOC108983... [more]
A0A2I4DSX71.73e-0983.78condensin-2 complex subunit D3 isoform X1 OS=Juglans regia OX=51240 GN=LOC108983... [more]
BLAST of MC08g_new0460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15890.11.3e-0559.46binding [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0460.1MC08g_new0460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007076 mitotic chromosome condensation
cellular_component GO:0005634 nucleus