MC08g_new0456 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0456
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 22556764 .. 22557089 (-)
RNA-Seq ExpressionMC08g_new0456
SyntenyMC08g_new0456
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCCCACTTATTTTTCTTGGACTAATAACAAATTTGTGTTTGAAAGCAGGTGCAGAGGCCTATGATGAAGATCTGGTGACGCTTAAAACGCTGACCACATCCATAAGGAGAGTTCGGGGTACTCAATCGTTTGTGAGGAAGATTCTCCCATTACTGCTGCAGATCCCGAGACCCGAGGTGTGGTTACGAGAGAACAATATGACGAGTTAAGGCGCAAATATAATTTTCTCTTGGCTACTTAACACGCCACTTGTGACTTCCTCAAGGAGCTATATGGTGATGGTGCACCTTCTCTTCCCGACAAGCTTAAGACTACTTAA

mRNA sequence

ATGGTAATCCCACTTATTTTTCTTGGACTAATAACAAATTTGTGTTTGAAAGCAGGTGCAGAGGCCTATGATGAAGATCTGGTGACGCTTAAAACGCTGACCACATCCATAAGGAGAGTTCGGGGTACTCAATCGTTTGTGAGGAAGATTCTCCCATTACTGCTGCAGATCCCGAGACCCGAGGAGCTATATGGTGATGGTGCACCTTCTCTTCCCGACAAGCTTAAGACTACTTAA

Coding sequence (CDS)

ATGGTAATCCCACTTATTTTTCTTGGACTAATAACAAATTTGTGTTTGAAAGCAGGTGCAGAGGCCTATGATGAAGATCTGGTGACGCTTAAAACGCTGACCACATCCATAAGGAGAGTTCGGGGTACTCAATCGTTTGTGAGGAAGATTCTCCCATTACTGCTGCAGATCCCGAGACCCGAGGAGCTATATGGTGATGGTGCACCTTCTCTTCCCGACAAGCTTAAGACTACTTAA

Protein sequence

MVIPLIFLGLITNLCLKAGAEAYDEDLVTLKTLTTSIRRVRGTQSFVRKILPLLLQIPRPEELYGDGAPSLPDKLKTT
Homology
[Close]
BLAST of MC08g_new0456 vs. NCBI nr
Match: XP_022159289.1 (uncharacterized protein LOC111025702 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.13e-07
Identity = 44/108 (40.74%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 1   MVIPLIFLGLITNLCLKAGAEAYDEDLVTLKTLTTSIRRVRG-----------------T 60
           MV PLIF   I  LCLKAG EA  ED+V  K   TSIRRVRG                 T
Sbjct: 53  MVGPLIFPARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDT 112

Query: 61  QSFV-----------RKILPLLLQIPRP-----EELYGDGAPSLPDKL 75
           +  V           R +  LL           ++LYGDGAPSLPD+L
Sbjct: 113 RGVVTREQYDEYEKLRHVYDLLFATQHATCEFLKKLYGDGAPSLPDEL 160

[Close]
BLAST of MC08g_new0456 vs. ExPASy TrEMBL
Match: A0A6J1E204 (uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025702 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.51e-07
Identity = 44/108 (40.74%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 1   MVIPLIFLGLITNLCLKAGAEAYDEDLVTLKTLTTSIRRVRG-----------------T 60
           MV PLIF   I  LCLKAG EA  ED+V  K   TSIRRVRG                 T
Sbjct: 53  MVGPLIFPARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDT 112

Query: 61  QSFV-----------RKILPLLLQIPRP-----EELYGDGAPSLPDKL 75
           +  V           R +  LL           ++LYGDGAPSLPD+L
Sbjct: 113 RGVVTREQYDEYEKLRHVYDLLFATQHATCEFLKKLYGDGAPSLPDEL 160

The following BLAST results are available for this feature:
BLAST of MC08g_new0456 vs.
Match NameE-valueIdentityDescription
BLAST of MC08g_new0456 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159289.13.13e-0740.74uncharacterized protein LOC111025702 [Momordica charantia][more]
BLAST of MC08g_new0456 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2041.51e-0740.74uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of MC08g_new0456 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0456.1MC08g_new0456.1mRNA