MC08g_new0432 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0432
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 21354195 .. 21355334 (-)
RNA-Seq Expression	MC08g_new0432
Synteny	MC08g_new0432

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCTATAAATGTCGGGGTGCCTTTCGTTTTCACTTTTCACTTTTTCACTCTCGAATTTTTGTGTACCTCAGCCGTTTCCAAGTCAGGTACTCTCTCCTTCTTTCTTTAGGTAGTTCTTTTAAGCGTTCCCATTCAGGTCTGACGATTAGTAGCTCGTCTAGTGAGTCGTCGTATGAGTCGTCCAGTACAACCGATACTGTAGGGGGGCCTAACCCTGCCCCAACCTCAGGGAATCCTCGTGCCATGGATAGCTCGACAATCCCCAACGTAGCATCCACTTCAGGAAACCCTAACCTTGGTCCGGTGGCCGAGCTACCTCCCTCGACCTGCTCGGTAGGTAGATTAGCCGAGCTTCGCAAAACTTACCTCATTCCCAACTCTATAAAGATTAGGGTGCCCAATGTCGGCGAACATCTTGACGACCCTCCTCCGGGCTTCGTCAGTTTCTATCCTCAGATGTTCAATAGGGGGTTAGGCTTCCACTTCATCCCTTTATTCAGAGATTCCTTAGCGCCGTTAATCTCGCTCCAGCTCAGCTCTCCCCTAATGGGTGGTCTACCTTGCTCGGAGCCTACGTTCTGTGGTGGGTCCTCCATGACGAGGACGGGGACAGACTCACGGTAGACCAACTCTTAGCGACCCACACCGTCAAAGCCTCCAACGAGGGAGAGGGTCGGTACTACCTCTCAGCTCGGCGGAACGTAGGTCAGCTGATTAGGAACCCCTCATTTAACAAAAATTGGAAGGAGTGTTGGTTCCTCGTCTCTGGTGAGTGGCTTCTGAGGGACGGAGGGGGTGAGCCGACCTGTCAAGTCCGAGTAGAGTTCGGAGACGTAGGTGAGTGTCTTAGGTATGATATAGGTTGTCTCTTATTTTCATGTCTTTGCTTCTCACGAGGTCTCATGGTGCAGCTCTGCCATCCCCCATTCCGAGGATCAACAACAAGTCTTGGGAGATCATCAGGCGAGCCCAAGGTCGGAGCCTAAAGTACGCACTGTGGGGTGAAGCACTCGTCTCGAACTCTCACCTCTTCTTCAGCGATCTCAGTTCTCACAACTAACCGGACAAGTTCAAAAAGCTCCCCAAACCTCGGCAACGCAGCTCACAGAAGCGAAAAGCCCCTGAAGGTAACTTCCTCC

mRNA sequence

ATGGATAGCTCGACAATCCCCAACGTAGCATCCACTTCAGGAAACCCTAACCTTGGTCCGGTGGCCGAGCTACCTCCCTCGACCTGCTCGGTAGGTAGATTAGCCGAGCTTCGCAAAACTTACCTCATTCCCAACTCTATAAAGATTAGGGTGCCCAATGTCGGCGAACATCTTGACGACCCTCCTCCGGGCTTCGTCAGTTTCTATCCTCAGATGTTCAATAGGGGGTTAGGCTTCCACTTCATCCCTTTATTCAGAGATTCCTTAGCGCCGTTAATCTCGCTCCAGCTCAGCTCTCCCCTAATGGGTGGTCTACCTTGCTCGGAGCCTACGTTCTGTGGTGGGTCCTCCATGACGAGGACGGGGACAGACTCACGGTAG

Coding sequence (CDS)

ATGGATAGCTCGACAATCCCCAACGTAGCATCCACTTCAGGAAACCCTAACCTTGGTCCGGTGGCCGAGCTACCTCCCTCGACCTGCTCGGTAGGTAGATTAGCCGAGCTTCGCAAAACTTACCTCATTCCCAACTCTATAAAGATTAGGGTGCCCAATGTCGGCGAACATCTTGACGACCCTCCTCCGGGCTTCGTCAGTTTCTATCCTCAGATGTTCAATAGGGGGTTAGGCTTCCACTTCATCCCTTTATTCAGAGATTCCTTAGCGCCGTTAATCTCGCTCCAGCTCAGCTCTCCCCTAATGGGTGGTCTACCTTGCTCGGAGCCTACGTTCTGTGGTGGGTCCTCCATGACGAGGACGGGGACAGACTCACGGTAG

Protein sequence

MDSSTIPNVASTSGNPNLGPVAELPPSTCSVGRLAELRKTYLIPNSIKIRVPNVGEHLDDPPPGFVSFYPQMFNRGLGFHFIPLFRDSLAPLISLQLSSPLMGGLPCSEPTFCGGSSMTRTGTDSR

Homology

[Close]

BLAST of MC08g_new0432 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.70e-05
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 26  PSTCSVGRLAELRKTYLIPNSIKIRVPNVGEHLDDPPPGFVSFYPQMFNRGLGFHFIP-- 85
           PS      L  LR+ + IP +I +R+P  GE  D+PP G+V+ Y +MF  GL     P  
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 86  ---LFRDSLAP 91
              LFR  LAP
Sbjct: 108 QEFLFRTGLAP 118

[Close]

BLAST of MC08g_new0432 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.70e-05
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 26  PSTCSVGRLAELRKTYLIPNSIKIRVPNVGEHLDDPPPGFVSFYPQMFNRGLGFHFIP-- 85
           PS      L  LR+ + IP +I +R+P  GE  D+PP G+V+ Y +MF  GL     P  
Sbjct: 48  PSRIPEHYLGSLRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFV 107

Query: 86  ---LFRDSLAP 91
              LFR  LAP
Sbjct: 108 QEFLFRTGLAP 118

[Close]

BLAST of MC08g_new0432 vs. ExPASy TrEMBL
Match: A0A2P6S9Y3 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0325301 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.67e-04
Identity = 24/63 (38.10%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 30 SVGRLAELRKTYLIPNSIKIRVPNVGEHLDDPPPGFVSFYPQMFNRGLGFHFIPLFRDSL 89
          SV  L ELR  Y IP+S+++R+   GE    PP GF++ YP M   G+   F P     +
Sbjct: 29 SVDALRELRWNYQIPDSVELRLIKDGELPSSPPDGFITLYPAMLELGIRIPFQPFVHGWV 88

Query: 90 APL 92
          + L
Sbjct: 89 SEL 91

The following BLAST results are available for this feature:

BLAST of MC08g_new0432 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159063.1	9.70e-05	40.85	uncharacterized protein LOC111025502, partial [Momordica charantia]	[more]

BLAST of MC08g_new0432 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXS5	4.70e-05	40.85	uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A2P6S9Y3	9.67e-04	38.10	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0325301 PE=4...	[more]

BLAST of MC08g_new0432 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0432.1	MC08g_new0432.1	mRNA