MC08g_new0427 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0427
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 21215039 .. 21216464 (-)
RNA-Seq ExpressionMC08g_new0427
SyntenyMC08g_new0427
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGGTGCCCCGCATGCTCCGGTGGAGGTGTGGTCATTCGACAAGATGGCTCGTACTAAAAAGAGACATATTCCAGTCTACAACAGTAAGTGACTAACTTTACTATGCATTTGTTTTTGAACTGTACCTTAGTGCTATCATATTCCGTGCAGGCCACAATCAAGAGCTTGGAACAGACTGCAGCGGAGATGGCATTTTTGAATAGGACATTCGAACTACTAGCATCAGATCAGGTGGAAAGTGCAGAAGAAGGCCTCGAACGTCCAGGACCTGCATGCGAGGGTCAGAACGATGTCATTCAACGTCCACTAGCCAATCAATGCTTTTGCCAATGTAGATGATACTGAAGACGGAGAGGCCACAAATAATAAAGATAAAAAGAAGAAAAAGAGCAAGAAGAAGGTGTATAAGCGGCTTAGAAGTTTGGACACGCGTATGGACACTGTGGAAAAGAAACTAGAAAGTGCACAGGGTGAGTTGAATTCCATACACAAGTATTAGCAACGGATTGCCAAGGTAAGTTTTTCAATAATTAAATTTTGTATTCCCGTATATTTTCACTATTGGAATCATGTAATATATCATTTTATGTATAGGGTCAACCAATCGACCCGACTGACATGCAAAGAGACAATGGAGGCAATGATGCTGGTGGAGTGGGGAGTACGGGTAATGGAGGATGCAACCCTGGAGATGCAACCGACAATGATCACGAAGGGGATGAACGTAGTGATGGACCAGCATGGACCACATGAAGGTCGACACTGGAGAGGTTCACGAAGTACCAAAGGTTAACATGAGAGAGGACGAAGGGGTCATAACGTGGAAGAGATTGAGTTCGAGTCCAATCGGTTTCAAACATCGGTACAAGAGGTATCGAACAATACCTAATATACTTAATTTTGGCTAACTTGCGAGGTTCTAACTCGTTTACTTACTGGCTCAATATGTCGAGAGTTCATCAGAAACAGACGAGGTATTGGATGAATCACAAGATGCAGACCCTGACGAAGTACGTTTCCTATCATAGCCATTGCCATGTCTGTAAAATAGTCGCCTGCAACGGGAAAAAAAAGTGCCATGGAGGTTGTATGGGTCGTTCGAAGTAAAGGTAGATGGGAAACGACACAAGGTCCTATAGTAGAATCCAGTAGTGGATATCTCAAAGGAGAATGATGCAAAATTTTAAGCATGTTAGATGACTATGAGAAGAAACGTTTAACGCAGAAGACCCCATATTCCGTCAGGAATAAGGACTGGTTCCACAATCTTCTGAGGCCAGGGAACTGGTGCACAGCCGAGGTACGGGATCATAACCACACTAAATATAGTAAAAATGTCTATGTTGATGTTTATAAATTGAGTACTGCTCACAGGTCGTTGACAAGCTATTCATACTGGTACGAAAGAAGCTTGAGTAG

mRNA sequence

ATGAAGACGGTGCCCCGCATGCTCCGGTGGAGGTGTGGTCATTCGACAAGATGGCTCGTACTAAAAAGAGACATATTCCAGTCTACAACAGCCACAATCAAGAGCTTGGAACAGACTGCAGCGGAGATGGCATTTTTGAATAGGACATTCGAACTACTAGCATCAGATCAGGTGGAAAGTGCAGAAGAAGGCCTCGAACGTCCAGGACCTGCATGCGAGGATGATACTGAAGACGGAGAGGCCACAAATAATAAAGATAAAAAGAAGAAAAAGAGCAAGAAGAAGGTGTATAAGCGGCTTAGAAGTTTGGACACGCGTATGGACACTGTGGAAAAGAAACTAGAAAGTGCACAGGGTGAGTTGAATTCCATACACAAGGTCAACCAATCGACCCGACTGACATGCAAAGAGACAATGGAGGCAATGATGCTGGTGGAGTGGGGAGTACGGGTAATGGAGGATGCAACCCTGGAGATGCAACCGACAATGATCACGAAGGGGATGAACGTAGTGATGGACCAGCATGGACCACATGAAGGTCGACACTGGAGAGGTTCACGAAGTACCAAAGAAACAGACGAGGTATTGGATGAATCACAAGATGCAGACCCTGACGAAAAGACCCCATATTCCGTCAGGAATAAGGACTGGTTCCACAATCTTCTGAGGCCAGGGAACTGGTGCACAGCCGAGGTCGTTGACAAGCTATTCATACTGGTACGAAAGAAGCTTGAGTAG

Coding sequence (CDS)

ATGAAGACGGTGCCCCGCATGCTCCGGTGGAGGTGTGGTCATTCGACAAGATGGCTCGTACTAAAAAGAGACATATTCCAGTCTACAACAGCCACAATCAAGAGCTTGGAACAGACTGCAGCGGAGATGGCATTTTTGAATAGGACATTCGAACTACTAGCATCAGATCAGGTGGAAAGTGCAGAAGAAGGCCTCGAACGTCCAGGACCTGCATGCGAGGATGATACTGAAGACGGAGAGGCCACAAATAATAAAGATAAAAAGAAGAAAAAGAGCAAGAAGAAGGTGTATAAGCGGCTTAGAAGTTTGGACACGCGTATGGACACTGTGGAAAAGAAACTAGAAAGTGCACAGGGTGAGTTGAATTCCATACACAAGGTCAACCAATCGACCCGACTGACATGCAAAGAGACAATGGAGGCAATGATGCTGGTGGAGTGGGGAGTACGGGTAATGGAGGATGCAACCCTGGAGATGCAACCGACAATGATCACGAAGGGGATGAACGTAGTGATGGACCAGCATGGACCACATGAAGGTCGACACTGGAGAGGTTCACGAAGTACCAAAGAAACAGACGAGGTATTGGATGAATCACAAGATGCAGACCCTGACGAAAAGACCCCATATTCCGTCAGGAATAAGGACTGGTTCCACAATCTTCTGAGGCCAGGGAACTGGTGCACAGCCGAGGTCGTTGACAAGCTATTCATACTGGTACGAAAGAAGCTTGAGTAG

Protein sequence

MKTVPRMLRWRCGHSTRWLVLKRDIFQSTTATIKSLEQTAAEMAFLNRTFELLASDQVESAEEGLERPGPACEDDTEDGEATNNKDKKKKKSKKKVYKRLRSLDTRMDTVEKKLESAQGELNSIHKVNQSTRLTCKETMEAMMLVEWGVRVMEDATLEMQPTMITKGMNVVMDQHGPHEGRHWRGSRSTKETDEVLDESQDADPDEKTPYSVRNKDWFHNLLRPGNWCTAEVVDKLFILVRKKLE
Homology
BLAST of MC08g_new0427 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.17e-18
Identity = 76/225 (33.78%), Postives = 98/225 (43.56%), Query Frame = 0

Query: 43  MAFLNRTFELLASDQVESAEEGLER---------------------PGPACEDDTEDGEA 102
           M FLNR  E  ASD++E+ EE  +R                     P  A  D  +DGEA
Sbjct: 1   MRFLNRAIEQPASDELEADEEVHQRLETAFEGQDRNTDRPTDNIGAPTAAEVDRNQDGEA 60

Query: 103 TNNKDKKKKKSKKKVYKRLRSLDTRMDTVEKKLESAQGELNSIH-KVNQSTRLTCKETME 162
             NK+KKKK +KK V KR++ LDTR+  ++KKLE  +GEL ++  +V  +TR        
Sbjct: 61  IQNKEKKKKVNKK-VLKRIKVLDTRVAVMDKKLEGVEGELKAVRGQVTGATR-------- 120

Query: 163 AMMLVEWGVRVMEDATLEMQPTMITKGMNVVMDQHGPHEGRHWRGSRSTKETDEVLDESQ 222
                                                                       
Sbjct: 121 ------------------------------------------------------------ 150

Query: 223 DADPDEKTPYSVRNKDWFHNLLRPGNWCTAEVVDKLFILVRKKLE 245
                 KT YS++NK WF NLLRPGNWCTAEVVD+LF+L+RKKLE
Sbjct: 181 ------KTVYSIKNKAWFRNLLRPGNWCTAEVVDELFMLLRKKLE 150

BLAST of MC08g_new0427 vs. NCBI nr
Match: XP_022154561.1 (uncharacterized protein LOC111021802 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 1.37e-09
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 0

Query: 3   TVPRMLRWRCGHSTRWLVLKRDIFQSTTATIKSLEQTAAEMAFLNRTFELLASDQVESAE 62
           TVP + +WR  HST W VL RDIF ST    ++L++T  E +FLNR+F+   SD  +  E
Sbjct: 209 TVPHIFKWRYDHSTAWHVLDRDIFCSTKGRTRTLDETDVETSFLNRSFDPPVSDDDDVME 268

Query: 63  EGLERPGPAC-------EDDT---------EDGEATNNKDKKKKK------SKKKVYKRL 122
           E  +  GP+        +D++         +D E  N + K K K        K+V K L
Sbjct: 269 ERGDNAGPSAVREGSQYDDESRGADVEMVEKDAELENEETKGKNKVCISTGRLKRVEKCL 328

Query: 123 RSLDTRMDTVEKKLESAQGELNSIHK 126
           +S+D RMD   +++   + EL SI K
Sbjct: 329 KSMDKRMD---ERMGDIEAELKSIKK 351

BLAST of MC08g_new0427 vs. ExPASy TrEMBL
Match: A0A6J1D3R7 (uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016993 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.05e-18
Identity = 76/225 (33.78%), Postives = 98/225 (43.56%), Query Frame = 0

Query: 43  MAFLNRTFELLASDQVESAEEGLER---------------------PGPACEDDTEDGEA 102
           M FLNR  E  ASD++E+ EE  +R                     P  A  D  +DGEA
Sbjct: 1   MRFLNRAIEQPASDELEADEEVHQRLETAFEGQDRNTDRPTDNIGAPTAAEVDRNQDGEA 60

Query: 103 TNNKDKKKKKSKKKVYKRLRSLDTRMDTVEKKLESAQGELNSIH-KVNQSTRLTCKETME 162
             NK+KKKK +KK V KR++ LDTR+  ++KKLE  +GEL ++  +V  +TR        
Sbjct: 61  IQNKEKKKKVNKK-VLKRIKVLDTRVAVMDKKLEGVEGELKAVRGQVTGATR-------- 120

Query: 163 AMMLVEWGVRVMEDATLEMQPTMITKGMNVVMDQHGPHEGRHWRGSRSTKETDEVLDESQ 222
                                                                       
Sbjct: 121 ------------------------------------------------------------ 150

Query: 223 DADPDEKTPYSVRNKDWFHNLLRPGNWCTAEVVDKLFILVRKKLE 245
                 KT YS++NK WF NLLRPGNWCTAEVVD+LF+L+RKKLE
Sbjct: 181 ------KTVYSIKNKAWFRNLLRPGNWCTAEVVDELFMLLRKKLE 150

BLAST of MC08g_new0427 vs. ExPASy TrEMBL
Match: A0A6J1DP34 (uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021802 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.65e-10
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 0

Query: 3   TVPRMLRWRCGHSTRWLVLKRDIFQSTTATIKSLEQTAAEMAFLNRTFELLASDQVESAE 62
           TVP + +WR  HST W VL RDIF ST    ++L++T  E +FLNR+F+   SD  +  E
Sbjct: 209 TVPHIFKWRYDHSTAWHVLDRDIFCSTKGRTRTLDETDVETSFLNRSFDPPVSDDDDVME 268

Query: 63  EGLERPGPAC-------EDDT---------EDGEATNNKDKKKKK------SKKKVYKRL 122
           E  +  GP+        +D++         +D E  N + K K K        K+V K L
Sbjct: 269 ERGDNAGPSAVREGSQYDDESRGADVEMVEKDAELENEETKGKNKVCISTGRLKRVEKCL 328

Query: 123 RSLDTRMDTVEKKLESAQGELNSIHK 126
           +S+D RMD   +++   + EL SI K
Sbjct: 329 KSMDKRMD---ERMGDIEAELKSIKK 351

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022148308.12.17e-1833.78uncharacterized protein LOC111016993 [Momordica charantia][more]
XP_022154561.11.37e-0935.62uncharacterized protein LOC111021802 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1D3R71.05e-1833.78uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1DP346.65e-1035.62uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0427.1MC08g_new0427.1mRNA