MC08g_new0426 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0426
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 21210188 .. 21212079 (+)
RNA-Seq Expression	MC08g_new0426
Synteny	MC08g_new0426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTCATGGAATTAAACAGTCTTTCAGCGACGAAACTCATCGTTGAAAGAAGGGCTTTGGCGACGAAAACCAATTTCGTCGCCAACGGTCTTCAATTTTCGTCGATGAGTTATTGATTTCGTCGCCGAATGGTGGTTTAAGGCGACAACATATAGTATTGTCGCCAAAAGTGAAGCTATTGGGGGCGAATTTCCGTCGCCATAAGTCAAAATTCTTGTAGTGTCAATGTTTTTTAAATGAAAACTTAAGAAATTGAAAAAAAAAGTAACAAAAATTGAAACCTAAAAATAAGAGAATAGAAAGAAAATGAAAATAGGCATAATAGTCATGGGAAATTGACTCGCATGACCTTCAAAAGTTTTTGGAATGCTCAAATGACTCACCCCTTCAGAATGTGCTTTTGTGACCCACTTTAAGTATTAATGAGGTGTCAAAGGAGATGAAATGACCATAATGTCCTTAATTATAAGAGATGACTGCTGGAGGAAAACTCGGTTGGGTAGTATCAATTCCCGCCCGAGAATCATTTAATTCGTACCAACCAATTTACCACTACTTTTAAGTTTTACCCAACCAATATATATATGTCATAATTGATCTCAGAGAAAAAAAAGTCCTTATCGTGAATATTCTCTCTGCACAATCCTACAAAATCTAAAAAGTCTCTCATTGGAAATTTGAAGATTTTGAAAGAGGTGGTCAATTTTTCTGTTTTCGCATTTTTCTTAAAAACCTTGCTTAATGGTCTACATTTGAAAAGTTGTTTTCTATTTGGCTCCTCGTTTTGTTTGCTTGTATTACAGTTTAAGTATGGTTACGAGATTGCCATTTTTAAACTTAGTTTTCTATGTCTGCATAATTTTGTCAAGGTTGACTATGATTATCGTGCGGGATTTCATGTTTCCCGACCGAGGTTCATATGAAAAGATGAATCTTATGCAGGGTTAAATAGTTTTCGCCCAGAGTCAAATGTAACGAATAAGAACAGTTGATACTACCTTACCCCGATCGTGGTTTTGGATTTAATTTGAATCACCCAAAACGGGAAAATAGTGGCCTCACCCGAGGTTTTGTTAGTTTTTTTTGTTTCTTTTACCGTTGGTCTGTTTTTTCATCTCTAATTTTGTTGCACTTTTGCTTTGTCATTTCCAAAAAAAAAAATGATTCGTCTTTTTGTTAGCTATAGAGGTCAGGGAAATTAGGCAGATACTGTATATGAAGGTGGGGTTATGGGTGGTTTAGATGTTGACGAATGCCTAACATAAAGACCTCGTAAGTGTGATCTTTAGGCTTACTCGAATAAATCTTGATCTTTTCCATATTGTTTTACAATGTATATACAAATTCGAGTTCCAGTACCAAGTGCCGATGTATTATATCTTTGATGATACTAGCCTTAGTTTTTTCCTTAGGGACCCTCTACATCCCTCTTAAGTGCCCTTGTATGTATTTGTTTTACCAAAGGAAAGACAAGGTAGTGGTAACAACTCACATGATGTACCATTATGCCCCAAACCGAAACATTCTCTTAATTTCCATGCCAAGTAGAACAAAATGTTCCTTCTCATCTTCCATTGAATCATATGCACTCCCCTACATACTGTCCATCCTCCATCTTATGTACAATTAATGACTCCATTGACGAACAATATGTTATCCCATGAAATTTATACGATAATAGACTAGAATACTTTGGTCAGTGGATGAGGTTGAAGGTGAGGATGATGAGGACCATGAGTACAAGATGGTTGGGGATGCTCCTATTGACGATCTTGAGGATGATGATTACTTAGAAACTGAGAATGATGATGATAATGAAGTTGATGAACCAGTTTGTGATGGTAATTCATCATCAAGAACACCCGTTGGAAGTACAGTCTGTAAGTAG

mRNA sequence

ATGTATTTCATGGAATTAAACAGTCTTTCAGCGACGAAACTCATCGTTGAAAGAAGGGCTTTGGCGACGAAAACCAATTTCGTCGCCAACGTGGATGAGGTTGAAGGTGAGGATGATGAGGACCATGAGTACAAGATGGTTGGGGATGCTCCTATTGACGATCTTGAGGATGATGATTACTTAGAAACTGAGAATGATGATGATAATGAAGTTGATGAACCAGTTTGTGATGGTAATTCATCATCAAGAACACCCGTTGGAAGTACAGTCTGTAAGTAG

Coding sequence (CDS)

ATGTATTTCATGGAATTAAACAGTCTTTCAGCGACGAAACTCATCGTTGAAAGAAGGGCTTTGGCGACGAAAACCAATTTCGTCGCCAACGTGGATGAGGTTGAAGGTGAGGATGATGAGGACCATGAGTACAAGATGGTTGGGGATGCTCCTATTGACGATCTTGAGGATGATGATTACTTAGAAACTGAGAATGATGATGATAATGAAGTTGATGAACCAGTTTGTGATGGTAATTCATCATCAAGAACACCCGTTGGAAGTACAGTCTGTAAGTAG

Protein sequence

MYFMELNSLSATKLIVERRALATKTNFVANVDEVEGEDDEDHEYKMVGDAPIDDLEDDDYLETENDDDNEVDEPVCDGNSSSRTPVGSTVCK

Homology

[Close]

BLAST of MC08g_new0426 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 2.41e-07
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 38  DDEDHEYKMVGDAPIDDLEDDD-YLETENDDDNEVDEPVCDGNSSSRTPV 86
           DDEDHEY+MVGD    DLEDDD Y E E++DDNE DEPV DG+ S RTPV
Sbjct: 194 DDEDHEYRMVGD----DLEDDDDYQEIESEDDNEADEPVYDGDPSLRTPV 239

[Close]

BLAST of MC08g_new0426 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.17e-07
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 38  DDEDHEYKMVGDAPIDDLEDDD-YLETENDDDNEVDEPVCDGNSSSRTPV 86
           DDEDHEY+MVGD    DLEDDD Y E E++DDNE DEPV DG+ S RTPV
Sbjct: 194 DDEDHEYRMVGD----DLEDDDDYQEIESEDDNEADEPVYDGDPSLRTPV 239

The following BLAST results are available for this feature:

BLAST of MC08g_new0426 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154803.1	2.41e-07	70.00	uncharacterized protein LOC111021969 [Momordica charantia]	[more]

BLAST of MC08g_new0426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLB0	1.17e-07	70.00	uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MC08g_new0426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0426.1	MC08g_new0426.1	mRNA