MC08g_new0420 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0420
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like
Location	MC08: 21058021 .. 21058960 (-)
RNA-Seq Expression	MC08g_new0420
Synteny	MC08g_new0420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTCATGTTCCTCCAAGCCACACGACAAAGAGAAGGAGAAGAAGAGAGTGTTGTTGCCTCCACAAACTAAACAGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATAAAAAATTAGTTTTTTATCCTAAGGAACAAAGAAAAAAAATATGAGGAAGCTATAAGAATGAACCCTAGGAGAAATCTATCAATAGGTGGTACAAATTCTGAAAAAATTAATATGGAATTTAATGATGCTAGGGTTAATAAGGAAGATTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTACAAAAAAACAAATCTCTAGAGGAAAAATGTGTTGTTTTAGATGAAGAAATATCTAGACTTCAAGAGAGAGCGTAAATGTTCAGTAAAAATAACGAAATTAGGGATAAAGAGAATGAGAGAGTTTATGCGAAAATTGAGGAAGTAAACATAAAATGGCAAGAATTCATGGAAACTCAAAGAAAGTGAGTGAGGAGATTCAACTTGAGTTAAATAGCATGATAACCCCGTTACCGAGTCTTTAGAACTGTCTATCCCTCCCCTTCTTTCCACTACTGTTGCTGTACATGTTGAAGGTCAAGGACAGGTTAGTGGGGACTCAGAACACGACATGGAGCCGTTGTAGCACTCAGATTCGGCCACGATCGAAATTCAGAGCCAAATTGTGTCTGGCACAATTTTGGATAGTCTCTGGCCACTCTACAAGGTATTTTGTCTCCATCTTTTCCAGATTCTATCTCGACTAAAAAACCCCTTATTTTTTATGATTCAGAACAGGAAAGGACAACGCCGAAAATTGCCAAAATTTTGGTGGCGTTGAATGAAGCAAGAGGAGAGGATCCATTACAGGATCATGGAAACAGTGGGGCAGCACAAAGACAATTGAATGTTGATGGAGAGGATGAAGATCTTTGA

mRNA sequence

ATGGAAGGTTCATGTTCCTCCAAGCCACACGACAAAGAGAAGGAGAAGAAGAGAGTGTTGTTGCCTCCACAAACTAAACAGGAACAGGAAAGGACAACGCCGAAAATTGCCAAAATTTTGGTGGCGTTGAATGAAGCAAGAGGAGAGGATCCATTACAGGATCATGGAAACAGTGGGGCAGCACAAAGACAATTGAATGTTGATGGAGAGGATGAAGATCTTTGA

Coding sequence (CDS)

ATGGAAGGTTCATGTTCCTCCAAGCCACACGACAAAGAGAAGGAGAAGAAGAGAGTGTTGTTGCCTCCACAAACTAAACAGGAACAGGAAAGGACAACGCCGAAAATTGCCAAAATTTTGGTGGCGTTGAATGAAGCAAGAGGAGAGGATCCATTACAGGATCATGGAAACAGTGGGGCAGCACAAAGACAATTGAATGTTGATGGAGAGGATGAAGATCTTTGA

Protein sequence

MEGSCSSKPHDKEKEKKRVLLPPQTKQEQERTTPKIAKILVALNEARGEDPLQDHGNSGAAQRQLNVDGEDEDL

Homology

[Close]

BLAST of MC08g_new0420 vs. NCBI nr
Match: XP_022144472.1 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.20e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 28  EQERTTPKIAKILVALNEARGEDPLQDHGNSGAAQRQLNVDGEDEDL 74
           EQERTTPKI +ILVALNEARGEDPL+D GN+GAAQ QLNVDGEDEDL
Sbjct: 707 EQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDL 753

[Close]

BLAST of MC08g_new0420 vs. NCBI nr
Match: XP_022158483.1 (uncharacterized protein LOC111024964 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 9.72e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 28  EQERTTPKIAKILVALNEARGEDPLQDHGNSGAAQRQLNVDGEDEDL 74
           EQERTT KI KILVALNEA GEDPL+D GNS  AQ +LNVDGEDEDL
Sbjct: 176 EQERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDL 222

[Close]

BLAST of MC08g_new0420 vs. ExPASy TrEMBL
Match: A0A6J1CTS8 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=3673 GN=LOC111014153 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.79e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 28  EQERTTPKIAKILVALNEARGEDPLQDHGNSGAAQRQLNVDGEDEDL 74
           EQERTTPKI +ILVALNEARGEDPL+D GN+GAAQ QLNVDGEDEDL
Sbjct: 707 EQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDL 753

[Close]

BLAST of MC08g_new0420 vs. ExPASy TrEMBL
Match: A0A6J1DW79 (uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024964 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.71e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 28  EQERTTPKIAKILVALNEARGEDPLQDHGNSGAAQRQLNVDGEDEDL 74
           EQERTT KI KILVALNEA GEDPL+D GNS  AQ +LNVDGEDEDL
Sbjct: 176 EQERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDL 222

The following BLAST results are available for this feature:

BLAST of MC08g_new0420 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144472.1	1.20e-15	87.23	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia]	[more]
XP_022158483.1	9.72e-13	80.85	uncharacterized protein LOC111024964 [Momordica charantia]	[more]

BLAST of MC08g_new0420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS8	5.79e-16	87.23	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=...	[more]
A0A6J1DW79	4.71e-13	80.85	uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MC08g_new0420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0420.1	MC08g_new0420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity