MC08g_new0375 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0375
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 19369621 .. 19370041 (-)
RNA-Seq ExpressionMC08g_new0375
SyntenyMC08g_new0375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGTGGATCTCGTACCTGCCAGCCAGGTTAGGCCATTTCGTCCCAAATACAACCCATTGCATAACTTTCCAGATGCCAAGTTTAGGGAGATGATGCGTTGGGTACAGGACCCTGGGAATGACAAAACAACGCGGCCGTCTACAACTTGGAATGTGCATAGTGGATATTCCAGAAGATTCTTCATTAACATCCTCAATCCTAAGAAGAAGGTCGAAGACCCGGTAAGTGATCCAACACATCCCATTACCCTATGCCCATTACTGCACTGTGTTTCACCAAACATATCTGCTGTACTCGTGTGTGCAGGAAGCTGCTGCCATTCTATATTTCATTATGAGGAAGCTCGGTAGTCGGCCGCACCTGTGCGTTCATAAGTTTTCTATCCTGGACCCACTACAAATGGTAAGATGGTAG

mRNA sequence

ATGGTGGATGTGGATCTCGTACCTGCCAGCCAGGTTAGGCCATTTCGTCCCAAATACAACCCATTGCATAACTTTCCAGATGCCAAGTTTAGGGAGATGATGCGTTGGGTACAGGACCCTGGGAATGACAAAACAACGCGGCCGTCTACAACTTGGAATGTGCATAGTGGATATTCCAGAAGATTCTTCATTAACATCCTCAATCCTAAGAAGAAGGTCGAAGACCCGGAAGCTGCTGCCATTCTATATTTCATTATGAGGAAGCTCGGTAGTCGGCCGCACCTGTGCGTTCATAAGTTTTCTATCCTGGACCCACTACAAATGGTAAGATGGTAG

Coding sequence (CDS)

ATGGTGGATGTGGATCTCGTACCTGCCAGCCAGGTTAGGCCATTTCGTCCCAAATACAACCCATTGCATAACTTTCCAGATGCCAAGTTTAGGGAGATGATGCGTTGGGTACAGGACCCTGGGAATGACAAAACAACGCGGCCGTCTACAACTTGGAATGTGCATAGTGGATATTCCAGAAGATTCTTCATTAACATCCTCAATCCTAAGAAGAAGGTCGAAGACCCGGAAGCTGCTGCCATTCTATATTTCATTATGAGGAAGCTCGGTAGTCGGCCGCACCTGTGCGTTCATAAGTTTTCTATCCTGGACCCACTACAAATGGTAAGATGGTAG

Protein sequence

MVDVDLVPASQVRPFRPKYNPLHNFPDAKFREMMRWVQDPGNDKTTRPSTTWNVHSGYSRRFFINILNPKKKVEDPEAAAILYFIMRKLGSRPHLCVHKFSILDPLQMVRW
Homology
BLAST of MC08g_new0375 vs. NCBI nr
Match: XP_022155100.1 (uncharacterized protein LOC111022232 [Momordica charantia])

HSP 1 Score: 144 bits (363), Expect = 1.71e-41
Identity = 74/108 (68.52%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MVDVDLVPASQVRPFRPKYNPLHNFPDAKFREMMRWVQDPGNDKTTRPSTTWNVHSGYSR 60
           MVDVDLVPASQ                           DPGNDK  RPSTTWNV SGYSR
Sbjct: 60  MVDVDLVPASQ---------------------------DPGNDKIMRPSTTWNVQSGYSR 119

Query: 61  RFFINILNPKKKVEDPEAAAILYFIMRKLGSRPHLCVHKFSILDPLQM 108
           +FFINILNPK+KVEDPEA AI YFIMRKLGSRPHLCVHKFSILDPLQM
Sbjct: 120 KFFINILNPKEKVEDPEAVAITYFIMRKLGSRPHLCVHKFSILDPLQM 140

BLAST of MC08g_new0375 vs. NCBI nr
Match: XP_038892557.1 (uncharacterized protein LOC120081601 [Benincasa hispida])

HSP 1 Score: 53.9 bits (128), Expect = 1.35e-05
Identity = 26/85 (30.59%), Postives = 39/85 (45.88%), Query Frame = 0

Query: 19  YNPLHNFPDAKFREMMRWVQDPGNDKTTRPSTTWNVHSGYSRRFFINILNPKKKVEDPEA 78
           YN  H  P     +MM W+ D   +   R     N      ++FF  ++ P   VE    
Sbjct: 323 YNVAHAIPHNIMTKMMSWISDDNTNNEVRE----NSFKPLDKQFFEELITPNSLVECDTI 382

Query: 79  AAILYFIMRKLGSRPHLCVHKFSIL 103
             + YF+  K  +RP +C+HKF+IL
Sbjct: 383 NTLFYFMKDKFYTRPDMCMHKFTIL 403

BLAST of MC08g_new0375 vs. ExPASy TrEMBL
Match: A0A6J1DLG9 (uncharacterized protein LOC111022232 OS=Momordica charantia OX=3673 GN=LOC111022232 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 8.30e-42
Identity = 74/108 (68.52%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MVDVDLVPASQVRPFRPKYNPLHNFPDAKFREMMRWVQDPGNDKTTRPSTTWNVHSGYSR 60
           MVDVDLVPASQ                           DPGNDK  RPSTTWNV SGYSR
Sbjct: 60  MVDVDLVPASQ---------------------------DPGNDKIMRPSTTWNVQSGYSR 119

Query: 61  RFFINILNPKKKVEDPEAAAILYFIMRKLGSRPHLCVHKFSILDPLQM 108
           +FFINILNPK+KVEDPEA AI YFIMRKLGSRPHLCVHKFSILDPLQM
Sbjct: 120 KFFINILNPKEKVEDPEAVAITYFIMRKLGSRPHLCVHKFSILDPLQM 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022155100.11.71e-4168.52uncharacterized protein LOC111022232 [Momordica charantia][more]
XP_038892557.11.35e-0530.59uncharacterized protein LOC120081601 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DLG98.30e-4268.52uncharacterized protein LOC111022232 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g_new0375.1MC08g_new0375.1mRNA