MC08g_new0098 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0098
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein RADIALIS-like 6
Location	MC08: 5482573 .. 5483974 (-)
RNA-Seq Expression	MC08g_new0098
Synteny	MC08g_new0098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGTCTTTGTCTTGCTATACTTTCTGTTCCGCTTTTTTGGCTTTTTTGGCTTTTTGGCAATATCATCACCTACTTATTCTCTCCAAACTTCCTTAATATAATGGCAACAAGTTCTAGCTCCTCATGGACGCATAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTATACCACGAGGACACGCCAGAGCGGTGGCAAAAGGTGGCCAGGGCTGTAGGTGGAAAAACGGCTGAGGAAGTAAAATGTCATTATGATATCTTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTCCCTCTTCCCAACTACAAGCCCGCTGTATCCAATGGTGATCATGAGCAGAGGTAACGTCTCTGTCTTTGTCTTTTTTTCTTTTTATTAAGGATAACGGTTCACGGTATCCTCGTACCCCAATTACCTCTACAATTGTATGATATTGTCCACTTTGAACATAATCTTTTTGGCTTTGCTTTTTAATTCACCTAAAAGATTTCGTAGTAATAGAGATAATTGTTCTTAATCTTTGTATATATACTATGGATCACTCTTTTCCTTAACAAATGTGAAAGTTTGTTTGCACCCTTTGCAACCCCAATACTCTCATTCTCAAAAAGTCATCAAGATCACTTGATATTTAGTTCATAGGGGAACAAGACCTTCATATAACATGTTTCTTGCATCAAGACCACATAAATTAGGGCTAGATATTCATCTTTGCTTGGACAATGAATCTCGCATATTTCTTGGTATAATATTGTCGACTTTGAACATAAATTACTAAACCCCGGAAACTCATGTTTCTATTTTCATGCGTTCCCACTTCTACTTTTTAAGGCAAAGGCCACGTGAAATCTAATCTCCCATGCTTTAAATTACGAGCACATGGTCCTGTATTTCTGAGTTCAGACATCTACGTACGTATTTATAAATCCCTTCATTAACATTGGGATCTACTTCAGTACATGGCCACAAAACTAATTAAGAAAACTGTTAAGCTAACATGGGTTGCGTTAATTAAACATCAACTAGACCCGAGAACTCGCCGTGAAGTATCCCACTGCAAACTTGCAGAACTAATTGTCCATATATTCACTCAGAAACATCTGACTAATCTTTTTATTGTTCTTCTTGACAATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTACTACAGATCATGGTCTAAATAAGAGCTGCAGAAGCGCTGTTCTCGATGATTACAAGAATATGGCTTGGTGTCAGTGTTTCTCTATTTTCCCACCCCTGTTTGTCCTTTCTAGCATGTAAAACTAAACTATTGTAAGTTGTAACGTAACCTGTTTGTTCTTGTACTCGATTATTCTGCTTTTAAGTGTACTTTTATGATTACTGTTCCGTTCGCTTTCCA

mRNA sequence

ATGGCAACAAGTTCTAGCTCCTCATGGACGCATAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTATACCACGAGGACACGCCAGAGCGGTGGCAAAAGGTGGCCAGGGCTGTAGGTGGAAAAACGGCTGAGGAAGTAAAATGTCATTATGATATCTTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTCCCTCTTCCCAACTACAAGCCCGCTGTATCCAATGGTGATCATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Coding sequence (CDS)

ATGGCAACAAGTTCTAGCTCCTCATGGACGCATAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTATACCACGAGGACACGCCAGAGCGGTGGCAAAAGGTGGCCAGGGCTGTAGGTGGAAAAACGGCTGAGGAAGTAAAATGTCATTATGATATCTTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTCCCTCTTCCCAACTACAAGCCCGCTGTATCCAATGGTGATCATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Protein sequence

MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ

Homology

[Close]

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-25
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 4  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
          SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 64 GKVPLPNYKPAVSN----GDHEQRLMKNLKL 91
          G+VPLPNYK   SN     D + R MKNLK+
Sbjct: 67 GRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-25
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNK FE ALA+Y +DTP+RWQ VA+AVG K+AEEVK HYDILV+DLM+IE 
Sbjct: 7   SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQ 66

Query: 64  GKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ 92
             VPLP YK     + S G  D + RLMKN+++Q
Sbjct: 67  DLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.8e-24
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
           M++ SS SWT KQNK FE ALA Y +DTP RWQ VA+ VGGKT EEVK HY++LVQD+  
Sbjct: 6   MSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINS 65

Query: 61  IESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ 92
           IE+G VP PNY+ +   +NG    E++ M+N++LQ
Sbjct: 66  IENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-22
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
           M++  S SWT KQNK FE ALA+Y +DTP+RW  VARAVGGKT EE K  YD+LV+D+  
Sbjct: 6   MSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIES 65

Query: 61  IESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ 92
           IE+G VP P+YK    N +      E++ M+++KLQ
Sbjct: 66  IENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-21
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 5  SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESG 64
          S   W+ K+NK FE ALA+Y +DTP+RW  VARAV G+T EEVK HY+ILV+D+ +IESG
Sbjct: 7  SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66

Query: 65 KVPLPNYKPAVSNGDHEQRLMKNLKLQ 92
          KVP PNY+    N   +++  +NLK++
Sbjct: 67 KVPFPNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of MC08g_new0098 vs. NCBI nr
Match: XP_022144207.1 (protein RADIALIS-like 6 [Momordica charantia])

HSP 1 Score: 189 bits (480), Expect = 1.40e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
          MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH
Sbjct: 1  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60

Query: 61 IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ 91
          IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
Sbjct: 61 IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ 91

[Close]

BLAST of MC08g_new0098 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155 bits (391), Expect = 7.21e-47
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIES
Sbjct: 11  SSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIES 70

Query: 64  GKVPLPNYKPAVSNGD---HEQRLMKNLKLQ 91
           GK+PLPNYKP VSNG     EQRLMKNLKLQ
Sbjct: 71  GKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 154 bits (389), Expect = 1.45e-46
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIES
Sbjct: 11  SSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIES 70

Query: 64  GKVPLPNYKPAVSNGD---HEQRLMKNLKLQ 91
           GKVPLPNYKP VSNG     EQRLMKNLKLQ
Sbjct: 71  GKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 154 bits (388), Expect = 2.07e-46
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 5   SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESG 64
           SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIESG
Sbjct: 12  SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESG 71

Query: 65  KVPLPNYKPAVSNG---DHEQRLMKNLKLQ 91
           KVPLPNYKP V NG   D EQRLMKNLKLQ
Sbjct: 72  KVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 6.92e-45
Identity = 76/90 (84.44%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 5   SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESG 64
           SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKT EEVK HYDIL+QDLMHIESG
Sbjct: 12  SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESG 71

Query: 65  KVPLPNYKPAVSNG---DHEQRLMKNLKLQ 91
           KVPLPNYKP   NG   D EQRLMKNLKLQ
Sbjct: 72  KVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL
Match: A0A6J1CT09 (protein RADIALIS-like 6 OS=Momordica charantia OX=3673 GN=LOC111013955 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 6.76e-61
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
          MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH
Sbjct: 1  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60

Query: 61 IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ 91
          IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
Sbjct: 61 IESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ 91

[Close]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.49e-47
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIES
Sbjct: 11  SSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIES 70

Query: 64  GKVPLPNYKPAVSNGD---HEQRLMKNLKLQ 91
           GK+PLPNYKP VSNG     EQRLMKNLKLQ
Sbjct: 71  GKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.49e-47
Identity = 79/91 (86.81%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIES
Sbjct: 11  SSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIES 70

Query: 64  GKVPLPNYKPAVSNGD---HEQRLMKNLKLQ 91
           GK+PLPNYKP VSNG     EQRLMKNLKLQ
Sbjct: 71  GKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.00e-46
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 5   SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESG 64
           SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIESG
Sbjct: 12  SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESG 71

Query: 65  KVPLPNYKPAVSNG---DHEQRLMKNLKLQ 91
           KVPLPNYKP V NG   D EQRLMKNLKLQ
Sbjct: 72  KVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 3.35e-45
Identity = 76/90 (84.44%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 5   SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESG 64
           SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKT EEVK HYDIL+QDLMHIESG
Sbjct: 12  SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESG 71

Query: 65  KVPLPNYKPAVSNG---DHEQRLMKNLKLQ 91
           KVPLPNYKP   NG   D EQRLMKNLKLQ
Sbjct: 72  KVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of MC08g_new0098 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 4  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
          SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 64 GKVPLPNYKPAVSN----GDHEQRLMKNLKL 91
          G+VPLPNYK   SN     D + R MKNLK+
Sbjct: 67 GRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of MC08g_new0098 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-26
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 4   SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
           SSSSSWT KQNK FE ALA+Y +DTP+RWQ VA+AVG K+AEEVK HYDILV+DLM+IE 
Sbjct: 7   SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQ 66

Query: 64  GKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ 92
             VPLP YK     + S G  D + RLMKN+++Q
Sbjct: 67  DLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of MC08g_new0098 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
           M++ SS SWT KQNK FE ALA Y +DTP RWQ VA+ VGGKT EEVK HY++LVQD+  
Sbjct: 6   MSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINS 65

Query: 61  IESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ 92
           IE+G VP PNY+ +   +NG    E++ M+N++LQ
Sbjct: 66  IENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of MC08g_new0098 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-24
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 4  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIES 63
          SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 64 GKVPLPNYKPAVSN 78
          G+VPLPNYK   SN
Sbjct: 67 GRVPLPNYKTFESN 80

[Close]

BLAST of MC08g_new0098 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 5.0e-23
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMH 60
           M++  S SWT KQNK FE ALA+Y +DTP+RW  VARAVGGKT EE K  YD+LV+D+  
Sbjct: 6   MSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIES 65

Query: 61  IESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ 92
           IE+G VP P+YK    N +      E++ M+++KLQ
Sbjct: 66  IENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

The following BLAST results are available for this feature:

BLAST of MC08g_new0098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	2.3e-25	63.74	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	8.9e-25	63.83	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	9.8e-24	56.84	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	7.1e-22	53.13	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	2.1e-21	54.02	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of MC08g_new0098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144207.1	1.40e-60	100.00	protein RADIALIS-like 6 [Momordica charantia]	[more]
XP_022961874.1	7.21e-47	86.81	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]
XP_038884277.1	1.45e-46	86.81	protein RADIALIS-like 4 [Benincasa hispida]	[more]
XP_008444724.1	2.07e-46	86.67	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_004152694.1	6.92e-45	84.44	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]

BLAST of MC08g_new0098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CT09	6.76e-61	100.00	protein RADIALIS-like 6 OS=Momordica charantia OX=3673 GN=LOC111013955 PE=4 SV=1	[more]
A0A6J1K2Q1	3.49e-47	86.81	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	3.49e-47	86.81	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]
A0A1S3BBS2	1.00e-46	86.67	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A0A0LPB1	3.35e-45	84.44	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]

BLAST of MC08g_new0098 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	1.7e-26	63.74	RAD-like 6	[more]
AT1G19510.1	6.3e-26	63.83	RAD-like 5	[more]
AT4G39250.1	7.0e-25	56.84	RAD-like 1	[more]
AT1G75250.1	4.5e-24	68.92	RAD-like 6	[more]
AT2G21650.1	5.0e-23	53.13	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 5..57 e-value: 5.4E-4 score: 29.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 8..51 e-value: 8.47473E-5 score: 34.8586
None	No IPR available	GENE3D	1.10.10.60		coord: 2..68 e-value: 3.4E-22 score: 80.0
None	No IPR available	PANTHER	PTHR43952:SF32	PROTEIN RADIALIS-LIKE 5	coord: 7..91
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 7..51 e-value: 7.4E-6 score: 26.1
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 7..91
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 7..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0098.1	MC08g_new0098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity