MC08g_new0001 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0001
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	gag_pre-integrs domain-containing protein
Location	MC08: 67499 .. 68802 (+)
RNA-Seq Expression	MC08g_new0001
Synteny	MC08g_new0001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAATCTTATCGCAAATGCTAGAGTGTGAAACTGCACAAGAAGTCTGGTCAGTCCTTAATACTCTTTTCTCTTCGAGAAATCTAGCCAGAGTTATGCAATTAAAATCTAAGTTAGAGAATACAAAGAAAGGAAATCTTAGCCTCAAAGAGTATTTCCTGAAAATAAAGAATATTGTGGATTCTTTAAATGCGACTGGAAAGAAAGTGTCCAAAGAAGATCATGTTATGCATTTGTTAGCAGGATTAGGAACAGATTATGATCCTACTGTATATGTAATTGTTGCTAAAATCGGTACTCCATCATTGCAATAAGTTTATTCTCTACTTCTTGCACAAGAAGGAAGAAACGAGAGGAATATAGTAACTACTAATGCGTCCTTACCCTCAATAAACTTGACTACTCAGCCAGAGCAACCAAAAAGAGCAAACTCATCTAATTTTTCTGAAAATAGAGGTAATTGGAACAATAACAGAGGAAGAGGAGGAAATCGATCAAATCGTAGCCGTCAGAATAATAACTCTAGAGTTCAATGTCAGCTATGTGGACGGTTTGGACATACAGTGCTACGATGTTACCTTCGGTTTGATCGTTCATATCAGGGACATAATGCTACACCGAATCATTCTTTTACTCCTATGAATAATACATTTTTTATGAATCGTTCATGCAATACCTTTTCTCAGGCTCAACAACAAGCACCATTGAATGCTCTGATGGTTGCTCCGGATCTTAATAGAGATACCAACTGGTATCCCGGCTCAGGTGCTTCAACACATGTAACAAATGATTTTGGCAACTTCTGGGAGTAACAAAGTTCATGTGGGAAACGGTACAGGTCTGAAAGTTCATCATATTGGATCATCTGTTCTTCAACCTTCCGATACTGCATCTTCTTCTCATAAATTTTTACTTACAAATCTTCTTCATGTTCCCCAAATTACCAAGAATCTAATTAGTGTTATACCTTTGCTAAAGACAACATTGTGTTCTTTGAATTTCACCCATTTTATTGCTTTGCAAAGGACATCAAAACTGGACAAGTACTTCTCGAGGGCAAGGTTTCTGATGGACTCCCTGCTCTTCTTCCATTACAGATAACTCTTTTCATCCTATTTCTACATCTCAGGTTCATCATCTCAATATTAGTCCTCCTTTGTCATCTACAAATTTTACTGATATACCATGTATACCATCTGTCTTTGATATTTGGCATTGGCGTCTTGGTCATCCCCAACCATCTACTGTGAAGCATGTACTCAATTCATGTAATATTTCCTTTTCAAGTAATAAAAATACTTCCTT

mRNA sequence

ATGATTTTGGCAACTTCTGGGAGTAACAAAGTTCATGTGGGAAACGGTACAGGTCTGAAAGTTCATCATATTGGATCATCTGTTCTTCAACCTTCCGATACTGCATCTTCTTCTCATAAATTTTTACTTACAAATCTTCTTCATGTTCCCCAAATTACCAAGAATCTAATTAGTGTTATACCTTTGCTAAAGACAACATTGTGTTCTTTGAATTTCACCCATTTTATTGCTTTGCAAAGGACATCAAAACTGGACAAGTACTTCTCGAGGGCAAGGTTTCTGATGGACTCCCTGCTCTTCTTCCATTACAGATAA

Coding sequence (CDS)

ATGATTTTGGCAACTTCTGGGAGTAACAAAGTTCATGTGGGAAACGGTACAGGTCTGAAAGTTCATCATATTGGATCATCTGTTCTTCAACCTTCCGATACTGCATCTTCTTCTCATAAATTTTTACTTACAAATCTTCTTCATGTTCCCCAAATTACCAAGAATCTAATTAGTGTTATACCTTTGCTAAAGACAACATTGTGTTCTTTGAATTTCACCCATTTTATTGCTTTGCAAAGGACATCAAAACTGGACAAGTACTTCTCGAGGGCAAGGTTTCTGATGGACTCCCTGCTCTTCTTCCATTACAGATAA

Protein sequence

MILATSGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISVIPLLKTTLCSLNFTHFIALQRTSKLDKYFSRARFLMDSLLFFHYR

Homology

[Close]

BLAST of MC08g_new0001 vs. NCBI nr
Match: PON68583.1 (hypothetical protein PanWU01x14_093920 [Parasponia andersonii])

HSP 1 Score: 54.3 bits (129), Expect = 1.17e-06
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 7   GSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISVIPLLKTT 66
           GSNK+H+GNG GL + H+G S L       SS   +L NLLHVP ITKNLI+V    K  
Sbjct: 41  GSNKMHLGNGAGLSISHVGCSYLPNV----SSKTLILKNLLHVPNITKNLINVSQFSKDN 100

Query: 67  LCSLNFTHFIAL 78
                F  F+++
Sbjct: 101 SVYFEFHPFVSI 108

[Close]

BLAST of MC08g_new0001 vs. NCBI nr
Match: KYP40820.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 56.2 bits (134), Expect = 1.46e-06
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6  SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
          +GS+KV++GNGTGL +HH+G S L        S   +L NLLHVP ITKNL+SV
Sbjct: 49 TGSDKVNIGNGTGLNIHHVGHSYLH---CPKFSKVVILNNLLHVPSITKNLLSV 99

[Close]

BLAST of MC08g_new0001 vs. NCBI nr
Match: KYP60841.1 (hypothetical protein KK1_023255 [Cajanus cajan])

HSP 1 Score: 54.3 bits (129), Expect = 1.71e-06
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 6  SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
          +GS+KV++GNGTGL +HH+G S L        S   +L NLLHVP ITK L+SV
Sbjct: 37 TGSDKVNIGNGTGLDIHHVGHSYLH---CPKFSKNVILNNLLHVPSITKKLLSV 87

[Close]

BLAST of MC08g_new0001 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.80e-06
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 7   GSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHK-FLLTNLLHVPQITKNLIS 58
           G+ K+ VGNGT L + HIGS++LQ    ++SS   F L NLLHVPQI KNLIS
Sbjct: 269 GNGKIQVGNGTNLSISHIGSALLQSISASNSSQPVFHLQNLLHVPQIAKNLIS 321

[Close]

BLAST of MC08g_new0001 vs. NCBI nr
Match: KYP75925.1 (hypothetical protein KK1_020137, partial [Cajanus cajan])

HSP 1 Score: 53.1 bits (126), Expect = 3.80e-06
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 6   SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
           +GS+KV++GNGTGL +HH+G S L        S   +L NLLHV  ITKNL+SV
Sbjct: 81  TGSDKVNIGNGTGLDIHHVGHSYLH---CPKFSKTVILNNLLHVTSITKNLLSV 131

[Close]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL
Match: A0A2N9EM64 (gag_pre-integrs domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3526 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.62e-08
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 6   SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
           +GS++VH+GNG GL +HHIGSS+L      S++H+F L ++LHVP I+ NLISV
Sbjct: 255 TGSDQVHIGNGEGLHIHHIGSSIL-----CSATHEFFLKHILHVPHISHNLISV 303

[Close]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL
Match: A0A2N9GHH1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26924 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.72e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 7   GSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLIS 58
           G ++V VGNG GL++HHIGSS+L      SSS  F LTN+LHVPQI  NL+S
Sbjct: 375 GPDQVRVGNGQGLQIHHIGSSIL-----CSSSKNFFLTNILHVPQIRHNLLS 421

[Close]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL
Match: A0A2N9HHN1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39021 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.38e-07
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 6   SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
           +G ++V +GNG GL++HHIGSS+L      SSS  F L N+LHVP I++NL+SV
Sbjct: 222 TGQDQVRIGNGQGLRIHHIGSSIL-----CSSSKNFFLNNVLHVPNISQNLLSV 270

[Close]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL
Match: A0A2P5D5K5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_093920 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.66e-07
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 7   GSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISVIPLLKTT 66
           GSNK+H+GNG GL + H+G S L       SS   +L NLLHVP ITKNLI+V    K  
Sbjct: 41  GSNKMHLGNGAGLSISHVGCSYLPNV----SSKTLILKNLLHVPNITKNLINVSQFSKDN 100

Query: 67  LCSLNFTHFIAL 78
                F  F+++
Sbjct: 101 SVYFEFHPFVSI 108

[Close]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL
Match: A0A151RDX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_037835 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.06e-07
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6  SGSNKVHVGNGTGLKVHHIGSSVLQPSDTASSSHKFLLTNLLHVPQITKNLISV 59
          +GS+KV++GNGTGL +HH+G S L        S   +L NLLHVP ITKNL+SV
Sbjct: 49 TGSDKVNIGNGTGLNIHHVGHSYLH---CPKFSKVVILNNLLHVPSITKNLLSV 99

The following BLAST results are available for this feature:

BLAST of MC08g_new0001 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0001 vs. NCBI nr


Match Name	E-value	Identity	Description
PON68583.1	1.17e-06	45.83	hypothetical protein PanWU01x14_093920 [Parasponia andersonii]	[more]
KYP40820.1	1.46e-06	55.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP60841.1	1.71e-06	53.70	hypothetical protein KK1_023255 [Cajanus cajan]	[more]
XP_022156747.1	1.80e-06	58.49	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
KYP75925.1	3.80e-06	53.70	hypothetical protein KK1_020137, partial [Cajanus cajan]	[more]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9EM64	2.62e-08	55.56	gag_pre-integrs domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOC...	[more]
A0A2N9GHH1	1.72e-07	59.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26924 PE=4 SV=1	[more]
A0A2N9HHN1	3.38e-07	53.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39021 PE=4 SV=1	[more]
A0A2P5D5K5	5.66e-07	45.83	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_093920 PE...	[more]
A0A151RDX4	7.06e-07	55.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of MC08g_new0001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0001.1	MC08g_new0001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding