MC08g2453 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2453
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribonucloprotein
Location	MC08: 33351841 .. 33353472 (-)
RNA-Seq Expression	MC08g2453
Synteny	MC08g2453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAATTTAGCAGTAGTTCTTAAACCCTAAATTTTTTCCTTCAAATTTTGCTGCCATTGCATTAAACCCTAATTTTCCTCTTCGATCCAAAATGGTACTGTATCTTCGTTACGCATGCGCGTAGGAGATTGATTTGTTTGAAAACTTGTTCTGATTTCGGTTTCATTCTTTTGCATGATTTTTTATGGTTGCTGCGTTTTTTTTTTCTGGCAGACAGGAGAGGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATTCGCAGCTTACGATTACCATACTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCGAATGAAGGTATTCGGTTTGTCGTGTGTTGGTGTCTCTCATTTGAAGAAAGTTTTTGTTTTTGAAAAAGAACTGACTGTGGTTTTTGTATGGTGTTTTTTATTTCCTTTGGCTAATAGTCATCTATTGATGGAATTTCAGCCACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTTCATCTTCCCTTGCTGGCTGAGGATAAGGTAAAACCTTTTTTTTTTTTTTGTAACTGTGGATTGAAAATCGTGGTTTTTTGCTGTTACTTGTTAAGACGAAGAGTTCGGCCAATGAAAGAATGAGCATGTTTAAGGATTCCAATATCTCCCCTGCCTTTTATTTTACTCTTTTTATTGACTTGCGAAATATTGGTGCTCCATATTTTAAAAAAATGTTAGGATTTAGCTTTTATTTAGACGTAATAGTTAGAAGCACTTTCTCTTTTTGTTCCTTTCTTAAGGATGCTTTGATGCATTGTTCTATGCAGCTTTAGTTATCGCTTTAGCTTTAAATGCATTCCATGTTTTTTTTAAAATGAAAATCTAATATGATTAGGAATAATTGGAATAAATTAGTAGAAGGGCTTCCAAATTATCGTTATTTATTTTAGCATATAAGAGGATTAAGTCGAAGTGGTAGCTGACAAGCTCTCATAATGGTCTCATAATCTCATATTGCCGTGCTTATTGACTATTTTTAAGATAGAGTAAAGCCACAATATCAGTTATGTTCCTTCATTCTTTCTCTCTGGTTAATTCAAGGCACCGTTCCCTATATTTCAAATTTTCTATTTGCCTTATTTTTCAGTTATACGTTTCTTCAGATGCTTGATCCTACAATGTAGAAAATGAAATTTTCCCTTTAACCTTGCCATGGAGTCTCATTTTGGATAGAGTTAGACGAACCAGGTGGCGATTCTTGAATTATATCTTTTGTTTATAACAGTAATTGGGGGAAAGTGTTTCTTTCTTCCATGTTTTATAGGCAGATATTTGATCATATACAGTCCTTATAAGAACCTTGTACTAGGAAGATTTCCTTTCCGGCCTTCAGTATTATTATGTCGTGTCTGTGAAATAATAATCGGTGCTTAATGCTCAGTGATATATAATCTTTTTTATTTTCAAATATCCAGAATGTCCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGGGTCACGAGACCGGTAATTGCATGTTCTGTAACAACAAACGAGGGTAGCCAATTGAAATCCCAGATACAGCAACTGAAG

mRNA sequence

AGAGAATTTAGCAGTAGTTCTTAAACCCTAAATTTTTTCCTTCAAATTTTGCTGCCATTGCATTAAACCCTAATTTTCCTCTTCGATCCAAAATGACAGGAGAGGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATTCGCAGCTTACGATTACCATACTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTTCATCTTCCCTTGCTGGCTGAGGATAAGGTAAAACCTTTTTTTTTTTTTTGTAACTGTGGATTGAAAATCGTGGTTTTTTGCTTGATATATTCTTTTTTATTTTCAAATATCCAGAATGTCCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGGGTCACGAGACCGGTAATTGCATGTTCTGTAACAACAAACGAGGGTAGCCAATTGAAATCCCAGATACAGCAACTGAAG

Coding sequence (CDS)

ATGACAGGAGAGGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATTCGCAGCTTACGATTACCATACTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTCAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCTGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTTCATCTTCCCTTGCTGGCTGAGGATAAGGTAAAACCTTTTTTTTTTTTTTGTAACTGTGGATTGAAAATCGTGGTTTTTTGCTTGATATATTCTTTTTTATTTTCAAATATCCAGAATGTCCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGGGTCACGAGACCGGTAATTGCATGTTCTGTAACAACAAACGAGGGTAGCCAATTGAAATCCCAGATACAGCAACTGAAG

Protein sequence

MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK

Homology

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BLAST of MC08g2453 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-46
Identity = 100/149 (67.11%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+QLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEI+LHLPLL EDK                             NVPYVFV SKQALGR
Sbjct: 61  EPLEIILHLPLLCEDK-----------------------------NVPYVFVRSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 121 ACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

[Close]

BLAST of MC08g2453 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-45
Identity = 99/149 (66.44%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+QLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEI+LHLPLL EDK                             NVPYVFV SKQALGR
Sbjct: 61  EPLEIILHLPLLCEDK-----------------------------NVPYVFVRSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 121 ACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

[Close]

BLAST of MC08g2453 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 97/149 (65.10%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEI+LHLPLL EDK                             NVPYVFV SKQALGR
Sbjct: 61  EPLEIILHLPLLCEDK-----------------------------NVPYVFVRSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 121 ACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of MC08g2453 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 97/149 (65.10%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEI+LHLPLL EDK                             NVPYVFV SKQALGR
Sbjct: 61  EPLEIILHLPLLCEDK-----------------------------NVPYVFVRSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 121 ACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of MC08g2453 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 97/149 (65.10%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLAD+ LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEI+LHLPLL EDK                             NVPYVFV SKQALGR
Sbjct: 61  EPLEIILHLPLLCEDK-----------------------------NVPYVFVRSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 121 ACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

[Close]

BLAST of MC08g2453 vs. NCBI nr
Match: VDC80954.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 222 bits (566), Expect = 1.50e-71
Identity = 122/162 (75.31%), Postives = 128/162 (79.01%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT EAVNPKAYPLADSQL ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTVEAVNPKAYPLADSQLAITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSF-------------LFSNIQNV 120
           EPLEILLHLPLLAEDKV    +     L ++VF L+Y               L S  +NV
Sbjct: 61  EPLEILLHLPLLAEDKVLTSSYPYGSQLSLLVFSLVYLICKVYESLCRICWLLDSTFENV 120

Query: 121 PYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           PYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQQLK
Sbjct: 121 PYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLK 162

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BLAST of MC08g2453 vs. NCBI nr
Match: XP_022142972.1 (NHP2-like protein 1 [Momordica charantia] >XP_022938234.1 NHP2-like protein 1 [Cucurbita moschata])

HSP 1 Score: 221 bits (562), Expect = 1.52e-71
Identity = 120/149 (80.54%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. NCBI nr
Match: XP_004139318.1 (NHP2-like protein 1 [Cucumis sativus] >XP_008457690.1 PREDICTED: NHP2-like protein 1 [Cucumis melo] >XP_020204814.1 NHP2-like protein 1 isoform X2 [Cajanus cajan] >XP_022946218.1 NHP2-like protein 1 [Cucurbita moschata] >XP_022966005.1 NHP2-like protein 1 [Cucurbita maxima] >XP_022999182.1 NHP2-like protein 1 [Cucurbita maxima] >XP_023521484.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023521798.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023536915.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023547054.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_025615507.1 NHP2-like protein 1 [Arachis hypogaea] >XP_025683384.1 NHP2-like protein 1 [Arachis hypogaea] >XP_038889698.1 NHP2-like protein 1 [Benincasa hispida] >KAG6586399.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030393.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma] >TKY54874.1 NHP2 protein 1 [Spatholobus suberectus] >KAG6599406.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KGN60670.1 hypothetical protein Csa_019317 [Cucumis sativus])

HSP 1 Score: 219 bits (559), Expect = 4.35e-71
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. NCBI nr
Match: CAF1742509.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 221 bits (562), Expect = 6.29e-71
Identity = 125/163 (76.69%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT EAVNPKAYPLADSQL ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTVEAVNPKAYPLADSQLAITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVK----PFFFFCNC-GLKIVVFCLIYSFLFSN---------IQN 120
           EPLEILLHLPLLAEDKV     PFF+  N  GL        +S L+ N         +QN
Sbjct: 61  EPLEILLHLPLLAEDKVLASSYPFFYLTNLDGLFFNNLLYQHSDLYLNSCSVSTFEWLQN 120

Query: 121 VPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           VPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQQLK
Sbjct: 121 VPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLK 163

[Close]

BLAST of MC08g2453 vs. NCBI nr
Match: XP_020206464.1 (NHP2-like protein 1 [Cajanus cajan])

HSP 1 Score: 219 bits (557), Expect = 8.77e-71
Identity = 118/149 (79.19%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. ExPASy TrEMBL
Match: A0A3P6A092 (Ribonucloprotein OS=Brassica campestris OX=3711 GN=BRAA03T12172Z PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 7.24e-72
Identity = 122/162 (75.31%), Postives = 128/162 (79.01%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT EAVNPKAYPLADSQL ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTVEAVNPKAYPLADSQLAITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSF-------------LFSNIQNV 120
           EPLEILLHLPLLAEDKV    +     L ++VF L+Y               L S  +NV
Sbjct: 61  EPLEILLHLPLLAEDKVLTSSYPYGSQLSLLVFSLVYLICKVYESLCRICWLLDSTFENV 120

Query: 121 PYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           PYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQQLK
Sbjct: 121 PYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLK 162

[Close]

BLAST of MC08g2453 vs. ExPASy TrEMBL
Match: A0A6J1CPF3 (Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111012970 PE=3 SV=1)

HSP 1 Score: 221 bits (562), Expect = 7.35e-72
Identity = 120/149 (80.54%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. ExPASy TrEMBL
Match: A0A6J1FDG8 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111444377 PE=3 SV=1)

HSP 1 Score: 221 bits (562), Expect = 7.35e-72
Identity = 120/149 (80.54%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. ExPASy TrEMBL
Match: A0A6J1HQD3 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 2.10e-71
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. ExPASy TrEMBL
Match: A0A444WXD4 (Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 2.10e-71
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGEAVNPKAYPLAD+QLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 149
           ACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

[Close]

BLAST of MC08g2453 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 113/149 (75.84%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 121 ACGVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of MC08g2453 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-53
Identity = 112/149 (75.17%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADSQL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           ACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 121 ACGVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of MC08g2453 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 204.5 bits (519), Expect = 5.8e-53
Identity = 118/175 (67.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGL-------------------------KIVVFCL 120
           EPLEILLHLPLLAEDKV  F    +                            KI ++ L
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 I-YSFLFSNIQNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           +  SF    + NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 175

[Close]

BLAST of MC08g2453 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-52
Identity = 111/149 (74.50%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKVKPFFFFCNCGLKIVVFCLIYSFLFSNIQNVPYVFVPSKQALGR 120
           EPLEILLHLPLLAEDK                             NVPYVFVPSKQALGR
Sbjct: 61  EPLEILLHLPLLAEDK-----------------------------NVPYVFVPSKQALGR 120

Query: 121 ACGVTRPVIACSVTTNEGSQLKSQIQQLK 150
           AC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 121 ACDVTRPVIACSVTSNEASQLKSQIQHLK 120

[Close]

BLAST of MC08g2453 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 191.0 bits (484), Expect = 6.7e-49
Identity = 113/181 (62.43%), Postives = 115/181 (63.54%), Query Frame = 0


Query: 1   MTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANE------------------- 60
           MTGE VNPKAYPLADSQL+ITILDLVQQA NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKVKPFFFFCNCGL 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDK            
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDK------------ 120

Query: 121 KIVVFCLIYSFLFSNIQNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 150
                            NVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ L
Sbjct: 121 -----------------NVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHL 152

The following BLAST results are available for this feature:

BLAST of MC08g2453 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6P8E9	6.7e-46	67.11	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q5XH16	1.5e-45	66.44	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	2.8e-44	65.10	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	2.8e-44	65.10	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	2.8e-44	65.10	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of MC08g2453 vs. NCBI nr


Match Name	E-value	Identity	Description
VDC80954.1	1.50e-71	75.31	unnamed protein product [Brassica rapa]	[more]
XP_022142972.1	1.52e-71	80.54	NHP2-like protein 1 [Momordica charantia] >XP_022938234.1 NHP2-like protein 1 [C...	[more]
XP_004139318.1	4.35e-71	79.87	NHP2-like protein 1 [Cucumis sativus] >XP_008457690.1 PREDICTED: NHP2-like prote...	[more]
CAF1742509.1	6.29e-71	76.69	unnamed protein product [Brassica napus]	[more]
XP_020206464.1	8.77e-71	79.19	NHP2-like protein 1 [Cajanus cajan]	[more]

BLAST of MC08g2453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6A092	7.24e-72	75.31	Ribonucloprotein OS=Brassica campestris OX=3711 GN=BRAA03T12172Z PE=3 SV=1	[more]
A0A6J1CPF3	7.35e-72	80.54	Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111012970 PE=3 SV=1	[more]
A0A6J1FDG8	7.35e-72	80.54	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111444377 PE=3 SV=1	[more]
A0A6J1HQD3	2.10e-71	79.87	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1	[more]
A0A444WXD4	2.10e-71	79.87	Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1	[more]

BLAST of MC08g2453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	6.9e-54	75.84	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.2e-53	75.17	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	5.8e-53	67.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	1.7e-52	74.50	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	6.7e-49	62.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 21..36 score: 65.0 coord: 8..21 score: 61.43
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 54..67 score: 48.7 coord: 35..49 score: 47.88 coord: 70..80 score: 41.32
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..149 e-value: 7.6E-52 score: 176.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 17..145
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 102..140 e-value: 2.1E-8 score: 33.8 coord: 23..77 e-value: 2.2E-11 score: 43.3
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..83
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 98..149
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 98..149
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2453.1	MC08g2453.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003723	RNA binding