MC08g2403 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2403
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L33, chloroplastic
Location	MC08: 32941058 .. 32941147 (-)
RNA-Seq Expression	MC08g2403
Synteny	MC08g2403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGATAAAAATGCCCGAGTAACAGTTATTTTGAAATGTACTCGTTGTGTT

mRNA sequence

GAGCTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGATAAAAATGCCCGAGTAACAGTTATTTTGAAATGTACTCGTTGTGTT

Coding sequence (CDS)

GAGCTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGATAAAAATGCCCGAGTAACAGTTATTTTGAAATGTACTCGTTGTGTT

Protein sequence

ELRESKIQGRFMAKDKNARVTVILKCTRCV

Homology

[Close]

BLAST of MC08g2403 vs. NCBI nr
Match: QJF46404.1 (ribosomal protein L33 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 4.29e-09
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          ELRESKIQGRFMAK K+ARVTVIL+CTRCV
Sbjct: 3  ELRESKIQGRFMAKGKDARVTVILECTRCV 32

[Close]

BLAST of MC08g2403 vs. NCBI nr
Match: VVW85178.1 (unnamed protein product, partial [Nymphaea colorata] >VVW90759.1 unnamed protein product, partial [Nymphaea colorata] >VVW92688.1 unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 46.2 bits (108), Expect = 5.82e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 21 ELGESKIQRRFMPKGKNPRVTVILECTSCV 50

[Close]

BLAST of MC08g2403 vs. NCBI nr
Match: VVW92930.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 46.2 bits (108), Expect = 6.17e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 24 ELGESKIQRRFMPKGKNPRVTVILECTSCV 53

[Close]

BLAST of MC08g2403 vs. NCBI nr
Match: YP_009387665.1 (ribosomal protein L33 [Hansenia forbesii] >YP_009387835.1 ribosomal protein L33 [Hansenia forrestii] >QPG23972.1 ribosomal protein L33 [Hansenia oviformis] >ART32609.1 ribosomal protein L33 [Hansenia forbesii] >ART32779.1 ribosomal protein L33 [Hansenia forrestii] >QHV38023.1 ribosomal protein L33 [Hansenia forbesii] >QHV38108.1 ribosomal protein L33 [Hansenia forbesii])

HSP 1 Score: 44.7 bits (104), Expect = 1.55e-04
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL +SKIQG FMAK K+ R+TVIL+CT CV
Sbjct: 3  ELSKSKIQGGFMAKGKDVRITVILECTCCV 32

[Close]

BLAST of MC08g2403 vs. NCBI nr
Match: AVE14547.1 (ribosomal protein L33 [Angelica tsinlingensis])

HSP 1 Score: 43.5 bits (101), Expect = 6.71e-04
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRC 29
          EL ESK Q RFMAK K+ RVTVIL+CT C
Sbjct: 24 ELSESKTQRRFMAKGKDIRVTVILECTNC 52

[Close]

BLAST of MC08g2403 vs. ExPASy TrEMBL
Match: A0A6M3W1I6 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo OX=3656 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.08e-09
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          ELRESKIQGRFMAK K+ARVTVIL+CTRCV
Sbjct: 3  ELRESKIQGRFMAKGKDARVTVILECTRCV 32

[Close]

BLAST of MC08g2403 vs. ExPASy TrEMBL
Match: A0A5K1C3F5 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS18209 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.76e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 4  ELGESKIQRRFMPKGKNPRVTVILECTSCV 33

[Close]

BLAST of MC08g2403 vs. ExPASy TrEMBL
Match: A0A5K1HDI6 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29165 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.82e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 21 ELGESKIQRRFMPKGKNPRVTVILECTSCV 50

[Close]

BLAST of MC08g2403 vs. ExPASy TrEMBL
Match: A0A5K1AQ79 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13247 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.82e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 21 ELGESKIQRRFMPKGKNPRVTVILECTSCV 50

[Close]

BLAST of MC08g2403 vs. ExPASy TrEMBL
Match: A0A5K1HV28 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS31342 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.99e-05
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1  ELRESKIQGRFMAKDKNARVTVILKCTRCV 30
          EL ESKIQ RFM K KN RVTVIL+CT CV
Sbjct: 24 ELGESKIQRRFMPKGKNPRVTVILECTSCV 53

The following BLAST results are available for this feature:

BLAST of MC08g2403 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2403 vs. NCBI nr


Match Name	E-value	Identity	Description
QJF46404.1	4.29e-09	90.00	ribosomal protein L33 [Cucumis melo]	[more]
VVW85178.1	5.82e-05	76.67	unnamed protein product, partial [Nymphaea colorata] >VVW90759.1 unnamed protein...	[more]
VVW92930.1	6.17e-05	76.67	unnamed protein product, partial [Nymphaea colorata]	[more]
YP_009387665.1	1.55e-04	70.00	ribosomal protein L33 [Hansenia forbesii] >YP_009387835.1 ribosomal protein L33 ...	[more]
AVE14547.1	6.71e-04	72.41	ribosomal protein L33 [Angelica tsinlingensis]	[more]

BLAST of MC08g2403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3W1I6	2.08e-09	90.00	50S ribosomal protein L33, chloroplastic OS=Cucumis melo OX=3656 GN=rpl33 PE=3 S...	[more]
A0A5K1C3F5	2.76e-05	76.67	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS18...	[more]
A0A5K1HDI6	2.82e-05	76.67	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A5K1AQ79	2.82e-05	76.67	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13...	[more]
A0A5K1HV28	2.99e-05	76.67	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS31...	[more]

BLAST of MC08g2403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2403.1	MC08g2403.1	mRNA