MC08g2384 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2384
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S11-like
Location	MC08: 32631479 .. 32634053 (+)
RNA-Seq Expression	MC08g2384
Synteny	MC08g2384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTCATATAGACATTATTATTTTCAATTAAAATATAAATATCCGAAAGTCTCGCTATTAGGCCTATTCTCTATTCTCTACCATTCTAGTTTCTAAAATAATAATAATAATAAATAAACAAGTAATAAATAAAATTAAAATTACAAAAAAAAAAAACCATGTTATCACCATGTTATCTAAAAAAATGATCTTTTAATTATTTTCCTCCTTTATCTTATTAAAAAAAAATTCCTCTACTATATATATACACACATTTCCCCCATAAACGTCCAAAAATTCTCATCAAATAATTAGGCCCATTTTGAAATTTAGGCCCATTTATCCTCTGAGCCCATTTATTGTCCCGTCTACTCTATAACTCTGCGAAGCAGGTTTAGGGTTTTTTCCTGAAGTCGAACTCTGCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGGAAGCCCTAGCCATGGCGGAACAGGTTTTTATTCAATCGCCAACCTTCACTTCTTTCTTCTGTTTAACATTCTTTGTTTCCTTTTAAGCGGCTTTAGCGTTCTGTCTCTGAATTCTTCATTCTTCATTCTTTTTTCTGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTCTGGTAAACGGATTGAAATATACTTTCACTAGCAGTTTTAGTATGACTTGTTGGTTTTTTTTTTTTTTTTTTTGAAATTATTGTCCTGTGCATTTGTGGTTTTCTTATCTGTGATTCAATTTTTGTTCTATTCTACAATAAAATAGCTCCAAAAAAACCGGAAAGGGGAAGAGACCTGGAAAGGGTGGGAATCGTTTCTGGAAGAGCATTGGATTAGGATTCAAGACGCCAAGGGAAGCCACTGAAGGTTCTGTTCTTTACTATGATTACATTGTGTTTGTTGGCTTGCTTTATACGAACGTGTTTAGTCGCCCTTTTAACTTACTGCATATCTTGAGTGTCAAAACATTTGAAGCCAAGCTTATTGTTTATCCTTAACTGGTTGTTTTCTTTAAACAACTTTCACCATGTACTTTAATCACCAATTAATAAAACTGTGCGCTTTAATCACTATTTATCTGGGACATCGTTGATATCATACTCTTTGTTGTAATTTATGACAATTATTTCTTATAAACATGATGAACTGGAGCCACATCCTTGTTCCAAAAAAGTTCTGAAATGCTGTAGGAAGAATGCTTATCAAAATGCTATTTGTTTGACTGCTGAGAGGATAGAACTCTGATAAAGGACATATTGAATAAACATTATGAGCTGAAGGGATAGTAATATTAGGGATCCTCTTTCCTCCTCCCTTTTATTAACCTCTACTAATAGAATAGGTGGTTGTTGTCTGCATAGGTACAATGATACCCATAACTATACCTATAATATGGATGGATAGTTGATGGAGTCAGAGAAAACTTTTGTGGATAAAGGCATTTTACTATTTTCTATTTCTCAACGAGAGATTAAAATTGAATATAAAAGTGATGAATCCTTATCCTGTTTCTATTGTTATGGGCTTCTTGTCCCTAAGGCCTCTAGGTTCTATTGTTTTGTTGGATTTTACTCACTGTCTTTGTTTCTTGCCAAACAATAGAGGAAAGAATGCTAAAGCCCTAAAGCAGCCTCATTTACCCTATGTACTGTATGCATCGTTGTGTCTAAACTTTAAGGTCCAATATTTAAGCATATCCTGCTCTCATGTTCATTGATTTCCTGCAGAAAATTAGAATGTTTTTTTACTTATTTAGCATTCCAATTCTGTTGTTTTCATGCAGGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTACCTTTCTCACTTCCCCCTACTACTGCCTACACTCCATATTTCTCTTCGCAAAAGAACATATAACATCATGGTTCTCTGACTTCTTTTGTTCATTCTGTCTCCTTCAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGTACATCAAGATATGAATAATTCTCCACCTTGATTATTGTTGTGATAGTTTTTGGATTTTAAGAAAACTTGTGTCATATTTTATCATTCAAATTTCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAAATCATGTAGGGTTTCGCTTTTGATAAAAAAACTGCATGAAAGAACTTTCGAGTTTTAGGCCATATTTGTGATGCAAGAGGGTTTTGAAGACTTACAGCCTGGATTTTGATATGAATATGGACTGTTTTATTCTGTTCTATTTGTTTTAATTTCTTGGTCTTAATTTTAGCAGATTTGGGGTTTTGAAGGGTACCAAATTCTCTTGTTGTCTTATAGGTATTCTAATACATGTCAGTTTTATAATATGAGA

mRNA sequence

GGCTCATATAGACATTATTATTTTCAATTAAAATATAAATATCCGAAAGTCTCGCTATTAGGCCTATTCTCTATTCTCTACCATTCTAGTTTCTAAAATAATAATAATAATAAATAAACAAGTAATAAATAAAATTAAAATTACAAAAAAAAAAAACCATGTTATCACCATGTTATCTAAAAAAATGATCTTTTAATTATTTTCCTCCTTTATCTTATTAAAAAAAAATTCCTCTACTATATATATACACACATTTCCCCCATAAACGTCCAAAAATTCTCATCAAATAATTAGGCCCATTTTGAAATTTAGGCCCATTTATCCTCTGAGCCCATTTATTGTCCCGTCTACTCTATAACTCTGCGAAGCAGGTTTAGGGTTTTTTCCTGAAGTCGAACTCTGCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGGAAGCCCTAGCCATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTCTGCTCCAAAAAAACCGGAAAGGGGAAGAGACCTGGAAAGGGTGGGAATCGTTTCTGGAAGAGCATTGGATTAGGATTCAAGACGCCAAGGGAAGCCACTGAAGGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAAATCATGTAGGGTTTCGCTTTTGATAAAAAAACTGCATGAAAGAACTTTCGAGTTTTAGGCCATATTTGTGATGCAAGAGGGTTTTGAAGACTTACAGCCTGGATTTTGATATGAATATGGACTGTTTTATTCTGTTCTATTTGTTTTAATTTCTTGGTCTTAATTTTAGCAGATTTGGGGTTTTGAAGGGTACCAAATTCTCTTGTTGTCTTATAGGTATTCTAATACATGTCAGTTTTATAATATGAGA

Coding sequence (CDS)

ATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTCTGCTCCAAAAAAACCGGAAAGGGGAAGAGACCTGGAAAGGGTGGGAATCGTTTCTGGAAGAGCATTGGATTAGGATTCAAGACGCCAAGGGAAGCCACTGAAGGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI

Homology

[Close]

BLAST of MC08g2384 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKTGKGKRPGKGGNRFWKSIGLGFKTPREA +GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of MC08g2384 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-81
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGK+PGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS++ GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]

BLAST of MC08g2384 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-81
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KKTGKGKRPGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]

BLAST of MC08g2384 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80
Identity = 144/160 (90.00%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGKRPGKGGNRFWK+IGLGFKTPREA +G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of MC08g2384 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 4.5e-80
Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK +GKGKRPGKGGNRFWK+IGLGFKTPREA +G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of MC08g2384 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 318 bits (816), Expect = 1.22e-109
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318 bits (815), Expect = 1.73e-109
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. NCBI nr
Match: XP_008447825.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosomal protein S11-like [Cucumis melo var. makuwa])

HSP 1 Score: 316 bits (810), Expect = 1.00e-108
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKT KGKRPGKGGNRFWKSIGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (808), Expect = 2.02e-108
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]

BLAST of MC08g2384 vs. NCBI nr
Match: XP_004153463.1 (40S ribosomal protein S11 [Cucumis sativus] >KGN43351.1 hypothetical protein Csa_020478 [Cucumis sativus])

HSP 1 Score: 312 bits (799), Expect = 4.76e-107
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKT KG +PGKGGNRFWK+IGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 318 bits (815), Expect = 8.37e-110
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 318 bits (815), Expect = 8.37e-110
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFWKSIGLGFKTPREA EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. ExPASy TrEMBL
Match: A0A5D3DI18 (40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003300 PE=3 SV=1)

HSP 1 Score: 316 bits (810), Expect = 4.85e-109
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKT KGKRPGKGGNRFWKSIGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. ExPASy TrEMBL
Match: A0A1S3BHR3 (40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1)

HSP 1 Score: 316 bits (810), Expect = 4.85e-109
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKT KGKRPGKGGNRFWKSIGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. ExPASy TrEMBL
Match: A0A0A0K691 (Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025720 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 2.31e-107
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKT KG +PGKGGNRFWK+IGLGFKTPR+A EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGNKPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]

BLAST of MC08g2384 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 298.5 bits (763), Expect = 3.2e-81
Identity = 144/160 (90.00%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGKRPGKGGNRFWK+IGLGFKTPREA +G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of MC08g2384 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 298.5 bits (763), Expect = 3.2e-81
Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK +GKGKRPGKGGNRFWK+IGLGFKTPREA +G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of MC08g2384 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 297.0 bits (759), Expect = 9.2e-81
Identity = 143/159 (89.94%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGKRPGKGGNRFWK+IGLGFKTPREA EGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of MC08g2384 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5M1	1.4e-81	92.45	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P25460	3.1e-81	92.95	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
P17093	4.0e-81	92.45	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P16181	4.5e-80	90.00	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]
P42733	4.5e-80	89.94	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]

BLAST of MC08g2384 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887258.1	1.22e-109	98.11	40S ribosomal protein S11-like [Benincasa hispida]	[more]
XP_022952178.1	1.73e-109	98.11	40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma...	[more]
XP_008447825.1	1.00e-108	97.48	PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosom...	[more]
XP_023554629.1	2.02e-108	97.48	40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo]	[more]
XP_004153463.1	4.76e-107	95.60	40S ribosomal protein S11 [Cucumis sativus] >KGN43351.1 hypothetical protein Csa...	[more]

BLAST of MC08g2384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZI1	8.37e-110	98.11	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ...	[more]
A0A6J1GJT3	8.37e-110	98.11	40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=...	[more]
A0A5D3DI18	4.85e-109	97.48	40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BHR3	4.85e-109	97.48	40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1	[more]
A0A0A0K691	2.31e-107	95.60	Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G02...	[more]

BLAST of MC08g2384 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48930.1	3.2e-81	90.00	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G23740.1	3.2e-81	89.94	ribosomal protein S11-beta	[more]
AT4G30800.1	9.2e-81	89.94	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 131..138 score: 73.25 coord: 121..131 score: 60.91 coord: 88..111 score: 37.33
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 74..142 e-value: 7.1E-26 score: 90.1
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..159
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 53..143 e-value: 5.3E-34 score: 114.3
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 4..72 e-value: 6.7E-31 score: 106.5
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..158 e-value: 4.0E-83 score: 279.1
None	No IPR available	PANTHER	PTHR10744:SF24	40S RIBOSOMAL PROTEIN S11-1-RELATED	coord: 1..159
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 121..133
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2384.1	MC08g2384.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome