MC08g2287 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g2287
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 31633314 .. 31633439 (-)
RNA-Seq ExpressionMC08g2287
SyntenyMC08g2287
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCTTTGCCGCAATTCGTCCAAGGCTCGACGCCCGGTTATGAGCTCCAACAGTAGAACTCCAAAAGAGTATACATCAGTCTTCTCATCAACTATCCCATGCATGAAATACTCGGGCGCGAAGTAT

mRNA sequence

AGGCTTTGCCGCAATTCGTCCAAGGCTCGACGCCCGGTTATGAGCTCCAACAGTAGAACTCCAAAAGAGTATACATCAGTCTTCTCATCAACTATCCCATGCATGAAATACTCGGGCGCGAAGTAT

Coding sequence (CDS)

AGGCTTTGCCGCAATTCGTCCAAGGCTCGACGCCCGGTTATGAGCTCCAACAGTAGAACTCCAAAAGAGTATACATCAGTCTTCTCATCAACTATCCCATGCATGAAATACTCGGGCGCGAAGTAT

Protein sequence

RLCRNSSKARRPVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY
Homology
BLAST of MC08g2287 vs. NCBI nr
Match: CAA2616312.1 (unnamed protein product [Spirodela intermedia] >CAA7391415.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 47.0 bits (110), Expect = 2.85e-05
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 11 RPVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          RPV SS   TP EYTS+FS T P MKYSGA+Y
Sbjct: 34 RPVTSSRRTTPNEYTSIFSLTFPYMKYSGARY 65

BLAST of MC08g2287 vs. NCBI nr
Match: RWW27809.1 (hypothetical protein GW17_00007741 [Ensete ventricosum] >RWW70519.1 hypothetical protein BHE74_00021784 [Ensete ventricosum] >RZR77056.1 hypothetical protein BHM03_00002032 [Ensete ventricosum])

HSP 1 Score: 47.0 bits (110), Expect = 1.42e-04
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 12 PVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          P M S+ +TPK  TSVFSST+PCMKYSGAK+
Sbjct: 19 PDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

BLAST of MC08g2287 vs. NCBI nr
Match: RRT86215.1 (hypothetical protein B296_00000401 [Ensete ventricosum])

HSP 1 Score: 47.0 bits (110), Expect = 2.66e-04
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 12 PVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          P M S+ +TPK  TSVFSST+PCMKYSGAK+
Sbjct: 19 PDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

BLAST of MC08g2287 vs. ExPASy TrEMBL
Match: A0A0A9D0U2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.82e-06
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 11 RPVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          RP MSS  +TPK  TSVFSST+PC+KYSGA++
Sbjct: 12 RPEMSSRRKTPKANTSVFSSTMPCVKYSGARH 43

BLAST of MC08g2287 vs. ExPASy TrEMBL
Match: A0A7I8IF30 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002534 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.38e-05
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 11 RPVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          RPV SS   TP EYTS+FS T P MKYSGA+Y
Sbjct: 34 RPVTSSRRTTPNEYTSIFSLTFPYMKYSGARY 65

BLAST of MC08g2287 vs. ExPASy TrEMBL
Match: A0A0A9NXH5 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.78e-05
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 11 RPVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          RP MSS  +TP   TSVFSST+PC+KYSGA++
Sbjct: 12 RPEMSSRRKTPNANTSVFSSTMPCVKYSGARH 43

BLAST of MC08g2287 vs. ExPASy TrEMBL
Match: A0A444FYV7 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007741 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 6.86e-05
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 12 PVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          P M S+ +TPK  TSVFSST+PCMKYSGAK+
Sbjct: 19 PDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

BLAST of MC08g2287 vs. ExPASy TrEMBL
Match: A0A427BCG3 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00000401 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.29e-04
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 12 PVMSSNSRTPKEYTSVFSSTIPCMKYSGAKY 42
          P M S+ +TPK  TSVFSST+PCMKYSGAK+
Sbjct: 19 PDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
CAA2616312.12.85e-0568.75unnamed protein product [Spirodela intermedia] >CAA7391415.1 unnamed protein pro... [more]
RWW27809.11.42e-0470.97hypothetical protein GW17_00007741 [Ensete ventricosum] >RWW70519.1 hypothetical... [more]
RRT86215.12.66e-0470.97hypothetical protein B296_00000401 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
A0A0A9D0U24.82e-0668.75Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7I8IF301.38e-0568.75Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002534 PE=4 SV... [more]
A0A0A9NXH52.78e-0565.63Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A444FYV76.86e-0570.97Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007741 PE=4 SV=1[more]
A0A427BCG31.29e-0470.97Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00000401 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g2287.1MC08g2287.1mRNA