MC08g2230 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2230
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box protein At5g49610-like
Location	MC08: 31097270 .. 31097527 (-)
RNA-Seq Expression	MC08g2230
Synteny	MC08g2230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCCAATGTATAGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCAAAAA

mRNA sequence

AAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCCAATGTATAGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCAAAAA

Coding sequence (CDS)

AAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCCAATGTATAGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCAAAAA

Protein sequence

KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETKFYNFVHGGCVYSPMQWPMYRCPDIFPFLLDFEPCNFFDNRRLNPQTMVKILQK

Homology

[Close]

BLAST of MC08g2230 vs. NCBI nr
Match: XP_022154661.1 (F-box protein At5g49610-like [Momordica charantia])

HSP 1 Score: 132 bits (331), Expect = 1.90e-34
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCPDIFP 60
           KRIWTK+LDLAMEMP AFYSSDV ++  +F E KF NFVHGGC YSP +  MY CPD+FP
Sbjct: 290 KRIWTKRLDLAMEMPIAFYSSDVAMNVQMFTEAKFCNFVHGGCTYSPTRGAMYGCPDVFP 349

Query: 61  FLLDFEPCNFFDN---RRLNPQTMVKILQK 86
           FL DFEPCN FD    RRLNP+TM+KIL+K
Sbjct: 350 FLSDFEPCNLFDTAPPRRLNPRTMLKILRK 379

[Close]

BLAST of MC08g2230 vs. NCBI nr
Match: TYK25356.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.09e-06
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  ++      P +
Sbjct: 269 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIEMGERNYKKLEQSHRHLPMV 328

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 329 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]

BLAST of MC08g2230 vs. NCBI nr
Match: KAA0043777.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.05e-05
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y   +      P +
Sbjct: 269 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKKSEQSHRHLPMV 328

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 329 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]

BLAST of MC08g2230 vs. NCBI nr
Match: XP_008443600.1 (PREDICTED: F-box protein At5g49610-like [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 1.06e-05
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y   +      P +
Sbjct: 301 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKKSEQSHRHLPMV 360

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 361 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 390

[Close]

BLAST of MC08g2230 vs. ExPASy TrEMBL
Match: A0A6J1DPD6 (F-box protein At5g49610-like OS=Momordica charantia OX=3673 GN=LOC111021865 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 9.21e-35
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCPDIFP 60
           KRIWTK+LDLAMEMP AFYSSDV ++  +F E KF NFVHGGC YSP +  MY CPD+FP
Sbjct: 290 KRIWTKRLDLAMEMPIAFYSSDVAMNVQMFTEAKFCNFVHGGCTYSPTRGAMYGCPDVFP 349

Query: 61  FLLDFEPCNFFDN---RRLNPQTMVKILQK 86
           FL DFEPCN FD    RRLNP+TM+KIL+K
Sbjct: 350 FLSDFEPCNLFDTAPPRRLNPRTMLKILRK 379

[Close]

BLAST of MC08g2230 vs. ExPASy TrEMBL
Match: A0A5D3DNY0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004950 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.98e-06
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  ++      P +
Sbjct: 269 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIEMGERNYKKLEQSHRHLPMV 328

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 329 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]

BLAST of MC08g2230 vs. ExPASy TrEMBL
Match: A0A5A7TPP2 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001090 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.07e-06
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y   +      P +
Sbjct: 269 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKKSEQSHRHLPMV 328

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 329 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]

BLAST of MC08g2230 vs. ExPASy TrEMBL
Match: A0A1S3B7Y4 (F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.13e-06
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 1   KRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCPDI 60
           K++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y   +      P +
Sbjct: 301 KKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKKSEQSHRHLPMV 360

Query: 61  FPFLLDFEPCNFFDN-RRLNPQTMVKILQK 86
           FPFL DFE  NF    R + P+ + KIL++
Sbjct: 361 FPFLSDFETWNFNPPPRSIKPKAVSKILRR 390

The following BLAST results are available for this feature:

BLAST of MC08g2230 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154661.1	1.90e-34	70.00	F-box protein At5g49610-like [Momordica charantia]	[more]
TYK25356.1	4.09e-06	35.56	F-box protein [Cucumis melo var. makuwa]	[more]
KAA0043777.1	1.05e-05	35.56	F-box protein [Cucumis melo var. makuwa]	[more]
XP_008443600.1	1.06e-05	35.56	PREDICTED: F-box protein At5g49610-like [Cucumis melo]	[more]

BLAST of MC08g2230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPD6	9.21e-35	70.00	F-box protein At5g49610-like OS=Momordica charantia OX=3673 GN=LOC111021865 PE=4...	[more]
A0A5D3DNY0	1.98e-06	35.56	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004950...	[more]
A0A5A7TPP2	5.07e-06	35.56	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001090...	[more]
A0A1S3B7Y4	5.13e-06	35.56	F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1	[more]

BLAST of MC08g2230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2230.1	MC08g2230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane