MC08g2106 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2106
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Zinc finger CONSTANS-like protein
Location	MC08: 29924160 .. 29924297 (-)
RNA-Seq Expression	MC08g2106
Synteny	MC08g2106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGGGAGGCGAGGGTTTTGAGGTACAGAGAGAAGAAGAAGAATAGGAAATTCGAGAAGACGATTCGGTACGCGTCCAGGAAAGCTTACGCCGAAATTCGGCCGAGAATCAAAGGGCGGTTCGTTAAACGGAGCGAA

mRNA sequence

GATCGGGAGGCGAGGGTTTTGAGGTACAGAGAGAAGAAGAAGAATAGGAAATTCGAGAAGACGATTCGGTACGCGTCCAGGAAAGCTTACGCCGAAATTCGGCCGAGAATCAAAGGGCGGTTCGTTAAACGGAGCGAA

Coding sequence (CDS)

GATCGGGAGGCGAGGGTTTTGAGGTACAGAGAGAAGAAGAAGAATAGGAAATTCGAGAAGACGATTCGGTACGCGTCCAGGAAAGCTTACGCCGAAATTCGGCCGAGAATCAAAGGGCGGTTCGTTAAACGGAGCGAA

Protein sequence

DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE

Homology

[Close]

BLAST of MC08g2106 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-15
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           DREARVLRYREK+KNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE 329

[Close]

BLAST of MC08g2106 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-14
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARVLRYREK+KNRKFEKTIRYASRKAYAE+RPRIKGRF KR++
Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273

[Close]

BLAST of MC08g2106 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 3.6e-14
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARV+RYREK+KNRKFEKTIRYASRKAYAE+RPRIKGRF KR++
Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 339

[Close]

BLAST of MC08g2106 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-14
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARVLRYREKKK RKF+KTIRYASRKAYAEIRPRIKGRF KR E
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIE 322

[Close]

BLAST of MC08g2106 vs. ExPASy Swiss-Prot
Match: Q39057 (Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKR 45
           DREARVLRYREK+K RKFEKTIRYASRKAYAEIRPR+ GRF KR
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348

[Close]

BLAST of MC08g2106 vs. NCBI nr
Match: AGU36787.1 (CONSTANS 3, partial [Helianthus annuus] >AGU36788.1 CONSTANS 3, partial [Helianthus annuus] >AGU36794.1 CONSTANS 3, partial [Helianthus annuus] >AGU36795.1 CONSTANS 3, partial [Helianthus annuus])

HSP 1 Score: 81.3 bits (199), Expect = 7.78e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. NCBI nr
Match: AGU36799.1 (CONSTANS 3, partial [Helianthus annuus])

HSP 1 Score: 81.3 bits (199), Expect = 7.78e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. NCBI nr
Match: AGU36784.1 (CONSTANS 3, partial [Helianthus petiolaris] >AGU36786.1 CONSTANS 3, partial [Helianthus annuus] >AGU36785.1 CONSTANS 3, partial [Helianthus petiolaris] >AGU36789.1 CONSTANS 3, partial [Helianthus annuus] >AGU36790.1 CONSTANS 3, partial [Helianthus annuus])

HSP 1 Score: 81.3 bits (199), Expect = 7.78e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. NCBI nr
Match: XP_038889312.1 (zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 1.83e-18
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
           DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPR+KGRFVKRSE
Sbjct: 200 DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSE 245

[Close]

BLAST of MC08g2106 vs. NCBI nr
Match: AGU36806.1 (CONSTANS 3, partial [Helianthus annuus])

HSP 1 Score: 80.1 bits (196), Expect = 2.23e-18
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RP+IKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPKIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. ExPASy TrEMBL
Match: T1WN68 (CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.77e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. ExPASy TrEMBL
Match: T1WMD2 (CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.77e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. ExPASy TrEMBL
Match: T1WMC4 (CONSTANS 3 (Fragment) OS=Helianthus petiolaris OX=4234 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.77e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. ExPASy TrEMBL
Match: T1WLD3 (CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.08e-18
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
          DREARVLRYREKKKNRKFEKTIRYASRKAYAE RP+IKGRF KR+E
Sbjct: 1  DREARVLRYREKKKNRKFEKTIRYASRKAYAETRPKIKGRFAKRTE 46

[Close]

BLAST of MC08g2106 vs. ExPASy TrEMBL
Match: A0A6J1DIM9 (zinc finger protein CONSTANS-LIKE 5-like OS=Momordica charantia OX=3673 GN=LOC111020825 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.09e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 46
           DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE
Sbjct: 246 DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 291

[Close]

BLAST of MC08g2106 vs. TAIR 10
Match: AT5G57660.1 (CONSTANS-like 5 )

HSP 1 Score: 80.1 bits (196), Expect = 5.1e-16
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           DREARVLRYREK+KNRKFEKTIRYASRKAYAE RPRIKGRF KR+E
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE 329

[Close]

BLAST of MC08g2106 vs. TAIR 10
Match: AT2G24790.1 (CONSTANS-like 3 )

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-15
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARVLRYREK+KNRKFEKTIRYASRKAYAE+RPRIKGRF KR++
Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273

[Close]

BLAST of MC08g2106 vs. TAIR 10
Match: AT5G24930.1 (CONSTANS-like 4 )

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-15
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARV+RYREK+KNRKFEKTIRYASRKAYAE+RPRIKGRF KR++
Sbjct: 338 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 383

[Close]

BLAST of MC08g2106 vs. TAIR 10
Match: AT3G02380.1 (CONSTANS-like 2 )

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKRSE 47
           +REARVLRYREKKK RKF+KTIRYASRKAYAEIRPRIKGRF KR E
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIE 322

[Close]

BLAST of MC08g2106 vs. TAIR 10
Match: AT5G15840.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-14
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   DREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRIKGRFVKR 45
           DREARVLRYREK+K RKFEKTIRYASRKAYAEIRPR+ GRF KR
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348

The following BLAST results are available for this feature:

BLAST of MC08g2106 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHH8	7.2e-15	91.30	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
Q9SK53	2.1e-14	86.96	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q940T9	3.6e-14	84.78	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q96502	4.7e-14	89.13	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]
Q39057	1.8e-13	88.64	Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1	[more]

BLAST of MC08g2106 vs. NCBI nr


Match Name	E-value	Identity	Description
AGU36787.1	7.78e-19	93.48	CONSTANS 3, partial [Helianthus annuus] >AGU36788.1 CONSTANS 3, partial [Heliant...	[more]
AGU36799.1	7.78e-19	93.48	CONSTANS 3, partial [Helianthus annuus]	[more]
AGU36784.1	7.78e-19	93.48	CONSTANS 3, partial [Helianthus petiolaris] >AGU36786.1 CONSTANS 3, partial [Hel...	[more]
XP_038889312.1	1.83e-18	97.83	zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]	[more]
AGU36806.1	2.23e-18	91.30	CONSTANS 3, partial [Helianthus annuus]	[more]

BLAST of MC08g2106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
T1WN68	3.77e-19	93.48	CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1	[more]
T1WMD2	3.77e-19	93.48	CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1	[more]
T1WMC4	3.77e-19	93.48	CONSTANS 3 (Fragment) OS=Helianthus petiolaris OX=4234 PE=4 SV=1	[more]
T1WLD3	1.08e-18	91.30	CONSTANS 3 (Fragment) OS=Helianthus annuus OX=4232 PE=4 SV=1	[more]
A0A6J1DIM9	1.09e-18	100.00	zinc finger protein CONSTANS-LIKE 5-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of MC08g2106 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57660.1	5.1e-16	91.30	CONSTANS-like 5	[more]
AT2G24790.1	1.5e-15	86.96	CONSTANS-like 3	[more]
AT5G24930.1	2.5e-15	84.78	CONSTANS-like 4	[more]
AT3G02380.1	3.3e-15	89.13	CONSTANS-like 2	[more]
AT5G15840.1	1.3e-14	88.64	B-box type zinc finger protein with CCT domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 2..44 e-value: 2.6E-19 score: 69.0
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 2..44 score: 16.419952
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 1..46
None	No IPR available	PANTHER	PTHR31319:SF39	ZINC FINGER PROTEIN CONSTANS-LIKE 1	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2106.1	MC08g2106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding