MC08g1934 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1934
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	MC08: 27515634 .. 27515894 (-)
RNA-Seq Expression	MC08g1934
Synteny	MC08g1934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

mRNA sequence

ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

Coding sequence (CDS)

ATGGTTTTTAGGATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGCACTTTTGGGTGTTGAACCAGATGAGGCTTGTGCTTTCACAACCATAAACCTTGCTCTGAGACAAGGTCGCCATATTCTTCAACTCCCAAGGGTGGAGGAAATGAGCACGAAAACGAATTCCGCGCCACGAAACAACAACAACAACTTCGATCCGAATCGATCGAGTGAAAGAAGGGTTCGACGGGGATCGGATCCTATCCACAACAGGTCT

Protein sequence

MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHILQLPRVEEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS

Homology

[Close]

BLAST of MC08g1934 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 1.90e-29
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMCVALL V+P++ACA  +I+LALR  RHIL +  RVEE++ K NS P
Sbjct: 1  MVFSIHRVLIVLLMCVALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSLP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          +NN   FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 QNNK--FDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of MC08g1934 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (258), Expect = 7.59e-27
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCV-ALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          MVF IHRVLVVLLMCV ALL V+PD+ACA  +I+LALR  RHIL +  RVEE + K NS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          PRN+   FDPN+SS+RRVRRGSDPIHN+S
Sbjct: 61 PRNSK--FDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of MC08g1934 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101 bits (252), Expect = 6.23e-26
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCV-ALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSA 60
          MVF IHRVLVVLLMCV ALL V+PD+ACA  +I+LA R  RHIL +  RVEE + K NS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          PRN+   FDPN+SS+RRVRRGSDPIHN+S
Sbjct: 61 PRNSK--FDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of MC08g1934 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 101 bits (251), Expect = 8.84e-26
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 3  FRIHRVLVVLLMCV-ALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAPR 62
          F IHRVL+VLLMCV ALL V+ D+ACA  +I+LALR  RHIL +   VEE++ K NS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NNNNNFDPNRSSERRVRRGSDPIHNRS 87
          NN   FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 63 NNK--FDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of MC08g1934 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 2.75e-23
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCV-ALLGVEPDEACAFTTINLALRQGRHILQLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMCV ALL V+P++AC  T+++LALR  RH+L+ PR        NS P
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPR------DRNSRP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          RN    FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 RNK---FDPNRSSKRRVRRGSDPIHNRS 79

[Close]

BLAST of MC08g1934 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 9.18e-30
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCVALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAP 60
          MVF IHRVL+VLLMCVALL V+P++ACA  +I+LALR  RHIL +  RVEE++ K NS P
Sbjct: 1  MVFSIHRVLIVLLMCVALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSLP 60

Query: 61 RNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          +NN   FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 61 QNNK--FDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of MC08g1934 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 4.28e-26
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 3  FRIHRVLVVLLMCV-ALLGVEPDEACAFTTINLALRQGRHIL-QLPRVEEMSTKTNSAPR 62
          F IHRVL+VLLMCV ALL V+ D+ACA  +I+LALR  RHIL +   VEE++ K NS PR
Sbjct: 3  FSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPR 62

Query: 63 NNNNNFDPNRSSERRVRRGSDPIHNRS 87
          NN   FDPNRSS+RRVRRGSDPIHNRS
Sbjct: 63 NNK--FDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of MC08g1934 vs. ExPASy TrEMBL
Match: A0A314ZMX4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07373 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.12e-16
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCVAL-LGVEPDEACAFTTINLALR--QGRHILQLPR---------V 60
          MVF  H V V LL CV L L V+PDE  A T+I LALR  QG++   +PR         +
Sbjct: 1  MVFSSHGVFV-LLFCVGLFLVVQPDEVSALTSIGLALRENQGQYHGIVPRHQRTLEAATM 60

Query: 61 EEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          EEMST+  ++  N N+NFDPN+SS+RRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNST-NTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of MC08g1934 vs. ExPASy TrEMBL
Match: M5XJX5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.23e-15
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1  MVFRIHRVLVVLLMCVAL-LGVEPDEACAFTTINLALRQG---------RH--ILQLPRV 60
          MVF  H V V LL C+ L L V+PDE  A T+I LALR+          RH   L+   +
Sbjct: 1  MVFSSHGVFV-LLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 EEMSTKTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          EEMST+  ++  N N+NFDPN+SS+RRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNST-NTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of MC08g1934 vs. ExPASy TrEMBL
Match: A0A498HEN2 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007184 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.23e-15
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 6  HRVLVVLLMCVALLGVEPDEACAFTTINLALRQGR---HILQLPR---------VEEMST 65
          H V ++LL+C+  L V+PDE  A T+I  ALRQ R   H   LPR         +EEMST
Sbjct: 6  HGVFILLLICIGFLVVQPDEVFALTSIGAALRQNRDQDHRWILPRNQRSLKAVTMEEMST 65

Query: 66 KTNSAPRNNNNNFDPNRSSERRVRRGSDPIHNRS 87
          +  ++   N NNFD N+SS+RRVRRGSDPIHNR+
Sbjct: 66 EKKNST--NTNNFDLNQSSKRRVRRGSDPIHNRA 97

The following BLAST results are available for this feature:

BLAST of MC08g1934 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1934 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032271.1	1.90e-29	70.45	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA...	[more]
KAG7029950.1	7.59e-27	69.66	hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598982.1	6.23e-26	68.54	hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN61380.1	8.84e-26	68.97	hypothetical protein Csa_006322 [Cucumis sativus]	[more]
KAG7036811.1	2.75e-23	64.77	hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC08g1934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRV2	9.18e-30	70.45	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LHH0	4.28e-26	68.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
A0A314ZMX4	6.12e-16	55.56	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_073...	[more]
M5XJX5	1.23e-15	53.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1	[more]
A0A498HEN2	1.23e-15	51.06	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007184 PE=4 SV=1	[more]

BLAST of MC08g1934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR36726:SF4	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1934.1	MC08g1934.1	mRNA