MC08g1858 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1858
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
LocationMC08: 26852184 .. 26855039 (-)
RNA-Seq ExpressionMC08g1858
SyntenyMC08g1858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAGTAGGTGGCTCGGCCCACACATTAGAGGTGTTAAAAAACCGGTGAAAACCTTGAACCGGTCAGACCGATTATTTTGTAGGAAAACCGAATTTTTTTCGTTTCGATTCGATTTTATAAAAAGAGATTAAAATTAAAAGCAAATCGAACCGAACCGACCAAAACTATATATGGACAAGCAAAAAACCCTAGCTCCTCCTTTTCTTCTCTTCGATTCGATTCTTCGACTCACGCCGGTGCGTGCTCGGCAGCAGCAAATCGGCTTAATCGCTCCATCTCCGGCGTGCCTCTGAGGATAATCTCTCAATTTCCGACTCTTTCTATCCCTCTGAGGAACAATTTCTCGCTGCTGGATATTTGTTCGGGTTCCTTAATCTTCAAATCCGAGGCTCTGAGTTCGCTTTCTGATTCAGTGTGGCAGTGGCTGGACTTGGGTCTTCATTAGCCCAACGCTCTACTCAGTCCTCCTGCAGCTGCCGAAGTGTTTTTGAGGTGAAACAGAAGAATGAGGCAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAGGTCATGCAGCGGTATCACGTCACTGGACGGGACGATTACAAAAAGTAACTTTCCATTTCTTGTAATTCCTTTCTTTTTTACCATTTTCTTCCTTTTGGTGCTTTGAGAAACAAATTTGATTTGAGTTGATTTAGGTATTCGAGCTTGTGCCGGAGGGTTCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAGGACCCTTTTCGATTGGAGTTGACTGAGAAGCTTCTTGAAAAGCTGTGAGTTTTTCCTTCTTCTCCAGAGAAATTTTTCTATATTACATTATGTTAATTTCATATCTATATATGCAATATAGGATTTTTTTTTTTCCTTGTGTGCTTTTGGCCAGTTGTTTTATTTTCTTGTTAATTTCAAAGATGCAATGAAATCTTCTACTGCTGGTTCAAATTATCTAGTTTTGTGTTTCCATGAATATTGTCAAGAAAGTTATGTTGTGAGCATAATGTGAAGACTGCTTATTTTGATCACTGCTAACATCTCTTCTATTTATGGTATGTGTTTTTGTCTAATTTGAAATGAGAAGCTTATTTTCTCCTAGCCTAGAGGCTCTAACAATTCAAGAGCCAGTTATGAGATCGAGATGTTGCATTTGAGATAAAAAAGTATATATCCAATAAAAAGGATATTAAAAAGGGTAAAATAACTGTGAGTCAATTCCAAAATTGTGTCCCATTTGATTGGCAGAACCTAATTGGTTTAAAGTTTCTGTTTCGGAGCTGGAGGATGCTAGTTAGTTTAACGTACCTATCTTGGATTTGAATTTCCCAGCTCCAATTTACGCTGTAAAAACAGGTCCACATTTTTTTTGCATTTATGCTAAATTCCTGAGAAAGAGCTTGAACCAATTTCCGAAGATCATGTTTCTCTTATTGCTCGATATTCTCAGGGTCTCTAGATTGAAAAGGTCTACTTTCTGAATACTTATAGGCAGTGACTTAGTGTTCTCCATTTTACTCCTACACATTCCATTTTCAAGGAACTACCAACGTCCTTCCATGAATTATCTATGTACCAGTACTGTATATTTTTCTAATGATTAAGCCATTTTAAATTTAGTATCTTTTGGCTCAGTTGGCTCAGTTTTTTAAGAGCCTCAATATTTTTTCAAATTGTCCAAGATTCTGAATCACCAATGGCACAAGAAACTATCAACATTCCTCATGAGTTATCAGTTATCTACACTATATTTTTTTAATGCTGAAGCTATTTCAAACTTGTTTATATTTCCTTTGCTCAATGTTTCAAGAACCAAACTTTTTTTTTGAAATTTTCTGAGACCTGAATGGATGATAGCACATCAATCTGGCTATACTGAAGTCAATTATATATGCAGATTATATGTAATCATTTCAACAATAATTTGCTACTTGATGTATTTTATTGCTTACATTTGCTCCCCTGCTTTCCTCCTGAAAAAAAATATGACAGGTACAATATTGGTGTGATACCGACCCGACAAAGCTTGAATTTATGTGACCGCTTGTCAGTGTCATCCTTTTGCAGGTAAAATGAACAGCCTGCAGCAAAGAGTTCATTTCTGGTTCGCAATGTTACGTATTTTCTTTTGCTAATAAACAATGCCAGTGGCAGACAGTTGTTAACACTGTTATTGCTTTTGCTGCATATCATTTTCATTTCAAGCCTGTTTTCCCCTTTCTATTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCGGAGCACCTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATCAGAGTAGGTCCAGAGACAGTTACTGACCCAGCATTCCTAGTTACAAGAAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTTGATGATTATGATGCCATGAACTGCTGAGATGAGTATTGTCCAGTTTTTGTTCCTTTTTACCTCAACCTCTTGTACGGATGTTTTCTCATCTCAGCCTCGTTCATACCTTCTGGTTCGGCATACAGGTTAAATTGCTATTCTAGATTATCTTAGCCCTTTTGGTTAAATTACGCTTTTAGTTCCTATGTTTGTTAGTAACTTAGCATAAGATATATGATGTAACCAATGGTTTTATGATATGATATGATAGGGTATTGTTTTTAAGGTTAAAGAACATTACTTTCAATGAAGTAATGATTGTGTTCCTGAACTTTAGTTTATAATGATTTAGTTTATGTACTTTCAAATTGATACAATAATTT

mRNA sequence

CCCAGTAGGTGGCTCGGCCCACACATTAGAGGTGTTAAAAAACCGGTGAAAACCTTGAACCGGTCAGACCGATTATTTTGTAGGAAAACCGAATTTTTTTCGTTTCGATTCGATTTTATAAAAAGAGATTAAAATTAAAAGCAAATCGAACCGAACCGACCAAAACTATATATGGACAAGCAAAAAACCCTAGCTCCTCCTTTTCTTCTCTTCGATTCGATTCTTCGACTCACGCCGGTGCGTGCTCGGCAGCAGCAAATCGGCTTAATCGCTCCATCTCCGGCGTGCCTCTGAGGATAATCTCTCAATTTCCGACTCTTTCTATCCCTCTGAGGAACAATTTCTCGCTGCTGGATATTTGTTCGGGTTCCTTAATCTTCAAATCCGAGGCTCTGAGTTCGCTTTCTGATTCAGTGTGGCAGTGGCTGGACTTGGGTCTTCATTAGCCCAACGCTCTACTCAGTCCTCCTGCAGCTGCCGAAGTGTTTTTGAGGTGAAACAGAAGAATGAGGCAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAGGTCATGCAGCGGTATCACGTCACTGGACGGGACGATTACAAAAAGTATTCGAGCTTGTGCCGGAGGGTTCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAGGACCCTTTTCGATTGGAGTTGACTGAGAAGCTTCTTGAAAAGCTGTACAATATTGGTGTGATACCGACCCGACAAAGCTTGAATTTATGTGACCGCTTGTCAGTGTCATCCTTTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCGGAGCACCTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATCAGAGTAGGTCCAGAGACAGTTACTGACCCAGCATTCCTAGTTACAAGAAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTTGATGATTATGATGCCATGAACTGCTGAGATGAGTATTGTCCAGTTTTTGTTCCTTTTTACCTCAACCTCTTGTACGGATGTTTTCTCATCTCAGCCTCGTTCATACCTTCTGGTTCGGCATACAGGTTAAATTGCTATTCTAGATTATCTTAGCCCTTTTGGTTAAATTACGCTTTTAGTTCCTATGTTTGTTAGTAACTTAGCATAAGATATATGATGTAACCAATGGTTTTATGATATGATATGATAGGGTATTGTTTTTAAGGTTAAAGAACATTACTTTCAATGAAGTAATGATTGTGTTCCTGAACTTTAGTTTATAATGATTTAGTTTATGTACTTTCAAATTGATACAATAATTT

Coding sequence (CDS)

ATGAGGCAGCTAAAATTTCACGAGCAGAAGCTGTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAGGTCATGCAGCGGTATCACGTCACTGGACGGGACGATTACAAAAAGTATTCGAGCTTGTGCCGGAGGGTTCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAGGACCCTTTTCGATTGGAGTTGACTGAGAAGCTTCTTGAAAAGCTGTACAATATTGGTGTGATACCGACCCGACAAAGCTTGAATTTATGTGACCGCTTGTCAGTGTCATCCTTTTGCAGACGGAGGCTATCGACGGTGTTGGTACGTTTGAAGTTTGCGGAGCACCTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATCAGAGTAGGTCCAGAGACAGTTACTGACCCAGCATTCCTAGTTACAAGAAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTTGATGATTATGATGCCATGAACTGCTGA

Protein sequence

MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSMLKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Homology
[Close]
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-55
Identity = 102/180 (56.67%), Postives = 144/180 (80.00%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWK-REGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSM 60
           +R+LKFHEQKLLK+V+FL W+  +    E +V++RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 102/180 (56.67%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWK-REGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSM 60
           +R+LKFHEQKLLK+V+FL W+  +    E +V++RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-54
Identity = 102/180 (56.67%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWK-REGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSM 60
           +R+LKFHEQKLLK+V+FL W+  +    E +V++RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-51
Identity = 93/180 (51.67%), Postives = 141/180 (78.33%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           +R+LK HEQKLLKKV+FLEWK++ GHR+ QVM+ YH+  R+DY KY+ +C  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY +GV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           E +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.2e-48
Identity = 88/183 (48.09%), Postives = 138/183 (75.41%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKR-EGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM+RYH++ R++Y+KY+ +C + ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL+++G++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDY 180
           ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW D+SKIKR + +YNDKLDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

[Close]
BLAST of MC08g1858 vs. NCBI nr
Match: XP_022155080.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia])

HSP 1 Score: 363 bits (932), Expect = 1.54e-126
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML
Sbjct: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of MC08g1858 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 351 bits (901), Expect = 8.20e-122
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 351 bits (900), Expect = 1.16e-121
Identity = 174/183 (95.08%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350 bits (897), Expect = 3.34e-121
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKYSS+CR VQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of MC08g1858 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 349 bits (896), Expect = 4.74e-121
Identity = 173/183 (94.54%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match: A0A6J1DLF0 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673 GN=LOC111022212 PE=3 SV=1)

HSP 1 Score: 363 bits (932), Expect = 7.44e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML
Sbjct: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 3.97e-122
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 351 bits (900), Expect = 5.64e-122
Identity = 174/183 (95.08%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 1.62e-121
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKYSS+CR VQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 183
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 349 bits (895), Expect = 3.26e-121
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 183
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of MC08g1858 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 291.6 bits (745), Expect = 4.5e-79
Identity = 139/181 (76.80%), Postives = 163/181 (90.06%), Query Frame = 0 

Query: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60
           MR+LK+HE+KL+KKVNFLEWKREG HRE ++  RYH+  RDDYKKYS LCR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYN+GVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           H +EAVTYIEQGH+RVGPET+TDPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDDYD 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 M 182
           +
Sbjct: 181 L 181

[Close]
BLAST of MC08g1858 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 52.4 bits (124), Expect = 4.5e-07
Identity = 35/130 (26.92%), Postives = 67/130 (51.54%), Query Frame = 0 

Query: 20  WKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +      R++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNIGVI-PTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIRVG 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVTDPAFLV 149
           + V  P+F+V
Sbjct: 141 QLVNIPSFMV 150

[Close]
BLAST of MC08g1858 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-07
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 0 

Query: 20  WKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +      R++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNIGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIRVG 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVTDPAFLVTRNMEDFITWVDSS 163
           + V  P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

The following BLAST results are available for this feature:
BLAST of MC08g1858 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y24.4e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q3T0M31.3e-5456.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q9NV311.7e-5456.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
P328993.8e-5151.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138355.2e-4848.09U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of MC08g1858 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155080.11.54e-126100.00U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia][more]
KAA0041194.18.20e-12295.63U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_004153543.11.16e-12195.08U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
XP_022955364.13.34e-12195.08U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
XP_038880355.14.74e-12194.54U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
BLAST of MC08g1858 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLF07.44e-127100.00U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673... [more]
A0A5D3BRX03.97e-12295.63U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A0A0KZG35.64e-12295.08S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
A0A6J1GW221.62e-12195.08U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ... [more]
A0A5D3DJI43.26e-12195.08U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
BLAST of MC08g1858 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.14.5e-7976.80Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
AT5G39850.14.5e-0726.92Ribosomal protein S4 [more]
AT5G15200.15.9e-0725.00Ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 2.3E-8
score: 43.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 2.2E-11
score: 43.3
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..175
e-value: 3.7706E-8
score: 46.4738
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 3.8E-25
score: 99.6
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 4..62
e-value: 1.9E-8
score: 35.1
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 107..182
e-value: 7.1E-8
score: 34.6
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..181
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..181
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 11.77329
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1858.1MC08g1858.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003723 RNA binding