MC08g1824 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1824
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small polypeptide DEVIL 3
Location	MC08: 26435512 .. 26435667 (+)
RNA-Seq Expression	MC08g1824
Synteny	MC08g1824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAAGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATTGTAATGCTTCTCTGTTGGCACGAT

mRNA sequence

AGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAAGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATTGTAATGCTTCTCTGTTGGCACGAT

Coding sequence (CDS)

AGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAAGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATTGTAATGCTTCTCTGTTGGCACGAT

Protein sequence

RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD

Homology

[Close]

BLAST of MC08g1824 vs. ExPASy Swiss-Prot
Match: Q6X5U0 (Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 11 EGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          +G KKK         LGGY++EQKG+LYIIR C+VML+CWHD
Sbjct: 2  KGTKKKT---PCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of MC08g1824 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-06
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 12 GKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          G  K+  W      +GG +REQK KLYIIR C+VMLLCWHD
Sbjct: 9  GGTKRKMW---SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MC08g1824 vs. ExPASy Swiss-Prot
Match: Q9SAF8 (Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-06
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 12 GKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          G K++V    S   LG  ++EQ+ KLYIIR C+VMLLCWHD
Sbjct: 5  GSKRRV----SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MC08g1824 vs. ExPASy Swiss-Prot
Match: Q6IM95 (Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-06
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 21 SSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          SS   LGG +REQ+ KLYII+ C+VMLLCW D
Sbjct: 9  SSSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

[Close]

BLAST of MC08g1824 vs. ExPASy Swiss-Prot
Match: Q6X5V0 (Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-05
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 7  VAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          V     ++ K   RS    LG Y++EQKG++YIIR C+VMLLC HD
Sbjct: 6  VMMSSAERSKEKKRSISRRLGKYMKEQKGRIYIIRRCMVMLLCSHD 51

[Close]

BLAST of MC08g1824 vs. NCBI nr
Match: XP_022143416.1 (uncharacterized protein LOC111013296 [Momordica charantia])

HSP 1 Score: 106 bits (265), Expect = 6.40e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD
Sbjct: 4  RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 55

[Close]

BLAST of MC08g1824 vs. NCBI nr
Match: XP_038906924.1 (uncharacterized protein LOC120092787 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 8.03e-19
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 7  VAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          + EG+ K+KKVSWRS RSSLGGYIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 13 MGEGKKKEKKVSWRS-RSSLGGYIREQKGRLYIIRSCIVMLLCWHD 57

[Close]

BLAST of MC08g1824 vs. NCBI nr
Match: XP_008461574.1 (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa] >TYK13498.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.77e-17
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7  VAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          + EG+ KK KKVSWRS RSSLGGYIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 9  MGEGKMKKEKKVSWRS-RSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of MC08g1824 vs. NCBI nr
Match: XP_011651363.1 (uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.46e-16
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 13 KKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          K KKVSWRS RSSLGGYI+EQKG+LYIIRSCIVMLLCWHD
Sbjct: 16 KDKKVSWRS-RSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of MC08g1824 vs. NCBI nr
Match: KAE8650571.1 (hypothetical protein Csa_009769, partial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.60e-16
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 13 KKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          K KKVSWRS RSSLGGYI+EQKG+LYIIRSCIVMLLCWHD
Sbjct: 20 KDKKVSWRS-RSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 58

[Close]

BLAST of MC08g1824 vs. ExPASy TrEMBL
Match: A0A6J1CQ69 (uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013296 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.10e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD
Sbjct: 4  RRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 55

[Close]

BLAST of MC08g1824 vs. ExPASy TrEMBL
Match: A0A5D3CQM7 (ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.56e-18
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7  VAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          + EG+ KK KKVSWRS RSSLGGYIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 9  MGEGKMKKEKKVSWRS-RSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of MC08g1824 vs. ExPASy TrEMBL
Match: A0A1S3CFH9 (uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.56e-18
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7  VAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          + EG+ KK KKVSWRS RSSLGGYIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 9  MGEGKMKKEKKVSWRS-RSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of MC08g1824 vs. ExPASy TrEMBL
Match: A0A6J1F4S9 (uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC111442169 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.42e-16
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 13 KKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          K KKVSWRS RSS G YIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 13 KNKKVSWRS-RSSFGSYIREQKGRLYIIRSCIVMLLCWHD 51

[Close]

BLAST of MC08g1824 vs. ExPASy TrEMBL
Match: A0A6J1IZ09 (uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.27e-15
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 13 KKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 52
          K KKV WRS RSS G YIREQKG+LYIIRSCIVMLLCWHD
Sbjct: 11 KNKKVLWRS-RSSFGSYIREQKGRLYIIRSCIVMLLCWHD 49

[Close]

BLAST of MC08g1824 vs. TAIR 10
Match: AT1G67265.1 (ROTUNDIFOLIA like 21 )

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-09
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 11 EGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          +G KKK         LGGY++EQKG+LYIIR C+VML+CWHD
Sbjct: 2  KGTKKKT---PCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of MC08g1824 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-08
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 12 GKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          G  K+  W      +GG +REQK KLYIIR C+VMLLCWHD
Sbjct: 9  GGTKRKMW---SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MC08g1824 vs. TAIR 10
Match: AT1G68825.2 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-08
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 12 GKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          G  K+  W      +GG +REQK KLYIIR C+VMLLCWHD
Sbjct: 9  GGTKRKMW---SRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MC08g1824 vs. TAIR 10
Match: AT1G13245.1 (ROTUNDIFOLIA like 17 )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 12 GKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          G K++V    S   LG  ++EQ+ KLYIIR C+VMLLCWHD
Sbjct: 5  GSKRRV----SSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MC08g1824 vs. TAIR 10
Match: AT3G25717.1 (ROTUNDIFOLIA like 16 )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 21 SSRSSLGGYIREQKGKLYIIRSCIVMLLCWHD 53
          SS   LGG +REQ+ KLYII+ C+VMLLCW D
Sbjct: 9  SSSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

The following BLAST results are available for this feature:

BLAST of MC08g1824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6X5U0	7.4e-08	59.52	Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1	[more]
Q6X5T8	1.4e-06	58.54	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]
Q9SAF8	5.3e-06	56.10	Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1	[more]
Q6IM95	5.3e-06	65.63	Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1	[more]
Q6X5V0	3.4e-05	50.00	Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1	[more]

BLAST of MC08g1824 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143416.1	6.40e-29	100.00	uncharacterized protein LOC111013296 [Momordica charantia]	[more]
XP_038906924.1	8.03e-19	84.78	uncharacterized protein LOC120092787 [Benincasa hispida]	[more]
XP_008461574.1	1.77e-17	85.11	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROT...	[more]
XP_011651363.1	1.46e-16	90.00	uncharacterized protein LOC105434872 [Cucumis sativus]	[more]
KAE8650571.1	1.60e-16	90.00	hypothetical protein Csa_009769, partial [Cucumis sativus]	[more]

BLAST of MC08g1824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ69	3.10e-29	100.00	uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5D3CQM7	8.56e-18	85.11	ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G...	[more]
A0A1S3CFH9	8.56e-18	85.11	uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=...	[more]
A0A6J1F4S9	5.42e-16	87.50	uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1IZ09	4.27e-15	85.00	uncharacterized protein LOC111481952 OS=Cucurbita maxima OX=3661 GN=LOC111481952...	[more]

BLAST of MC08g1824 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67265.1	5.2e-09	59.52	ROTUNDIFOLIA like 21	[more]
AT1G68825.1	9.9e-08	58.54	ROTUNDIFOLIA like 15	[more]
AT1G68825.2	9.9e-08	58.54	ROTUNDIFOLIA like 15	[more]
AT1G13245.1	3.8e-07	56.10	ROTUNDIFOLIA like 17	[more]
AT3G25717.1	3.8e-07	65.63	ROTUNDIFOLIA like 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 31..49 e-value: 3.4E-10 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR47855	OS01G0525701 PROTEIN	coord: 9..52
None	No IPR available	PANTHER	PTHR47855:SF3	DVL1-RELATED	coord: 9..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1824.1	MC08g1824.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane