MC08g1806 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1806
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	HMG-Y-related protein A-like
Location	MC08: 26205715 .. 26206445 (+)
RNA-Seq Expression	MC08g1806
Synteny	MC08g1806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCCAACAAATCCACGATATCAAAGTACATAGAATCAACTTATGGAAACTTGCCCACTGGGCACTCATCTCTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAAAGGGACCCCACGGCACCTCCCCGGCGGGGGCGTGGCAGGCCTCCAAAACCAAAGGTGCCTCTGCCGTCCAATGTGGCATCATCCCCACCAAAGCCCAGAGGCCGCCCACCTAAGGACCCCAATGCACCTCCACAGCCACCGAAGCCAGTGACGATGAAGGTATCTTCTGGGACTGGGAAACCAAGAGGACGACCGAGGAAATTGGCTCGGCCAACGTCCATCACAGCACCTCCAGCACCGAGCGGGAGGCCCAGAGGTCGGCCTCCCAAGGCGAAGGCTCCGTTGACTGAAGTTGGCGTTCAACAGTAGACTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCTCTCTCTCTCTGTTGATGTGTGAGCAGTTGTAGATGTAGAACTAGTATTAGTTTGTTGTGGGTGTGGGTGTGGGTGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGCTTGTGAGGCTCTGTTGCTTTCCAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATCTCTCTTAGTGTTTCAATCA

mRNA sequence

ATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCCAACAAATCCACGATATCAAAGTACATAGAATCAACTTATGGAAACTTGCCCACTGGGCACTCATCTCTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAAAGGGACCCCACGGCACCTCCCCGGCGGGGGCGTGGCAGGCCTCCAAAACCAAAGGTGCCTCTGCCGTCCAATGTGGCATCATCCCCACCAAAGCCCAGAGGCCGCCCACCTAAGGACCCCAATGCACCTCCACAGCCACCGAAGCCAGTGACGATGAAGGTATCTTCTGGGACTGGGAAACCAAGAGGACGACCGAGGAAATTGGCTCGGCCAACGTCCATCACAGCACCTCCAGCACCGAGCGGGAGGCCCAGAGGTCGGCCTCCCAAGGCGAAGGCTCCGTTGACTGAAGTTGGCGTTCAACAGTAGACTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCTCTCTCTCTCTGTTGATGTGTGAGCAGTTGTAGATGTAGAACTAGTATTAGTTTGTTGTGGGTGTGGGTGTGGGTGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGCTTGTGAGGCTCTGTTGCTTTCCAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATCTCTCTTAGTGTTTCAATCA

Coding sequence (CDS)

ATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCCAACAAATCCACGATATCAAAGTACATAGAATCAACTTATGGAAACTTGCCCACTGGGCACTCATCTCTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAAAGGGACCCCACGGCACCTCCCCGGCGGGGGCGTGGCAGGCCTCCAAAACCAAAGGTGCCTCTGCCGTCCAATGTGGCATCATCCCCACCAAAGCCCAGAGGCCGCCCACCTAAGGACCCCAATGCACCTCCACAGCCACCGAAGCCAGTGACGATGAAGGTATCTTCTGGGACTGGGAAACCAAGAGGACGACCGAGGAAATTGGCTCGGCCAACGTCCATCACAGCACCTCCAGCACCGAGCGGGAGGCCCAGAGGTCGGCCTCCCAAGGCGAAGGCTCCGTTGACTGAAGTTGGCGTTCAACAGTAG

Protein sequence

MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ

Homology

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BLAST of MC08g1806 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-46
Identity = 104/163 (63.80%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HLN MK SGEL F +NNYM
Sbjct: 18  MIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHLNKMKDSGELSFKQNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           K DP APP+RGRGRPPKPK PLP     SPP+PRGRPPKDPNAPP+ PK    K + G+G
Sbjct: 78  KADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPGSG 137

Query: 121 KPRGRPRKLARPTSITAPPA-PSGRPRGRPPKAKAPLTEVGVQ 163
           +PRGRP+K+ R  ++ AP A  SGRPRGRPPK K  LTEV V+
Sbjct: 138 RPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of MC08g1806 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-44
Identity = 101/156 (64.74%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 8   ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 67
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 68  PRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTGKPRGRPR 127
           P+RGRGRPPKPKVPLP     SPP+PRGRPPKDPNAPP+ PK    K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPATGRPRGRPK 120

Query: 128 KLARPTSITAPPAPS-GRPRGRPPKAKAPLTEVGVQ 163
           K+AR  ++ +P A S GRPRGRPPK K  LTEV V+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of MC08g1806 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-30
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+  KNNYM
Sbjct: 29  MIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYM 88

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSN-----------VASSPPKPRGRPPKDPNAPPQPPK 120
           K DP APP+RGRGRPPK K    S+           V++ PP+ RGRPPK P  P +PP+
Sbjct: 89  KPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK-PKDPSEPPQ 148

Query: 121 PVTMKVSSGTGKPRGRPRKLARPTSIT-APPAPSG------RPRGRPPKAK 154
               KV +G+G+PRGRP K  R  S T A P P+       R RGRPPK K
Sbjct: 149 E---KVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of MC08g1806 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.0e-26
Identity = 85/170 (50.00%), Postives = 101/170 (59.41%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL  MK SGELVF KNNY 
Sbjct: 18  MILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNYF 77

Query: 61  KRD-PTAPPRRGRGRPPK---PKVPLPS-NVASSPPKPRGRPPKDPNAPPQPPKPVTMKV 120
           +   P APP+RGRGRPPK   P  P P+    SS  + RGRPPK       P +    + 
Sbjct: 78  RAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPPK----AKSPLEAAVKQA 137

Query: 121 SSGTGKPRGRPRKLARPTSITAP-----PAPSG-------RPRGRPPKAK 154
           ++G  KPRGRP K A+     +P     PAP+G       R RGRPPK +
Sbjct: 138 TAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRGRPPKVR 183

[Close]

BLAST of MC08g1806 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 316 bits (810), Expect = 2.45e-108
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ
Sbjct: 138 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 180

[Close]

BLAST of MC08g1806 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (702), Expect = 7.08e-92
Identity = 143/163 (87.73%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP + A SPPKPRGRPPKDPNAPP+PPKPV MKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRK  +  +  APPAPSGRPRGRPPK KA LTEV VQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of MC08g1806 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274 bits (701), Expect = 1.11e-91
Identity = 145/166 (87.35%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKP---VTMKVSS 120
           KRDPTAPPRRGRGRPPK KVPLP     SPPKPRGRPPKDPNAPP+PPKP   V MKVSS
Sbjct: 78  KRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSS 137

Query: 121 GTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           GTGKPRGRPRK  RP +  APP PSGRPRGRPPK K PLTEV VQQ
Sbjct: 138 GTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ 183

[Close]

BLAST of MC08g1806 vs. NCBI nr
Match: KAE8650587.1 (hypothetical protein Csa_009737 [Cucumis sativus])

HSP 1 Score: 271 bits (693), Expect = 9.32e-91
Identity = 142/163 (87.12%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 60

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP +   S PKPRGRPPKDPNAPP+PPKPV MKVSSGTG
Sbjct: 61  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 120

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRK  +  S  APPAPSGRPRGRPPK KA LTEV VQQ
Sbjct: 121 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 163

[Close]

BLAST of MC08g1806 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 271 bits (693), Expect = 1.66e-90
Identity = 142/163 (87.12%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP +   S PKPRGRPPKDPNAPP+PPKPV MKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRK  +  S  APPAPSGRPRGRPPK KA LTEV VQQ
Sbjct: 138 KPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of MC08g1806 vs. ExPASy TrEMBL
Match: A0A6J1CQC1 (HMG-Y-related protein A-like OS=Momordica charantia OX=3673 GN=LOC111013192 PE=3 SV=1)

HSP 1 Score: 316 bits (810), Expect = 1.19e-108
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ
Sbjct: 138 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 180

[Close]

BLAST of MC08g1806 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 3.43e-92
Identity = 143/163 (87.73%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP + A SPPKPRGRPPKDPNAPP+PPKPV MKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRK  +  +  APPAPSGRPRGRPPK KA LTEV VQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of MC08g1806 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 3.43e-92
Identity = 143/163 (87.73%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTG 120
           KRDPTAPPRRGRGRPPK K PLP + A SPPKPRGRPPKDPNAPP+PPKPV MKVSSGTG
Sbjct: 78  KRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTG 137

Query: 121 KPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           KPRGRPRK  +  +  APPAPSGRPRGRPPK KA LTEV VQQ
Sbjct: 138 KPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of MC08g1806 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 5.39e-92
Identity = 145/166 (87.35%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKP---VTMKVSS 120
           KRDPTAPPRRGRGRPPK KVPLP     SPPKPRGRPPKDPNAPP+PPKP   V MKVSS
Sbjct: 78  KRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSS 137

Query: 121 GTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           GTGKPRGRPRK  RP +  APP PSGRPRGRPPK K PLTEV VQQ
Sbjct: 138 GTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ 183

[Close]

BLAST of MC08g1806 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 5.39e-92
Identity = 145/166 (87.35%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM
Sbjct: 18  MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 77

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNAPPQPPKP---VTMKVSS 120
           KRDPTAPPRRGRGRPPK KVPLP     SPPKPRGRPPKDPNAPP+PPKP   V MKVSS
Sbjct: 78  KRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSS 137

Query: 121 GTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 163
           GTGKPRGRPRK  RP +  APP PSGRPRGRPPK K PLTEV VQQ
Sbjct: 138 GTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ 183

[Close]

BLAST of MC08g1806 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+  KNNYM
Sbjct: 29  MIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNYM 88

Query: 61  KRDPTAPPRRGRGRPPKPKVPLPSN-----------VASSPPKPRGRPPKDPNAPPQPPK 120
           K DP APP+RGRGRPPK K    S+           V++ PP+ RGRPPK P  P +PP+
Sbjct: 89  KPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK-PKDPSEPPQ 148

Query: 121 PVTMKVSSGTGKPRGRPRKLARPTSIT-APPAPSG------RPRGRPPKAK 154
               KV +G+G+PRGRP K  R  S T A P P+       R RGRPPK K
Sbjct: 149 E---KVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of MC08g1806 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 73/213 (34.27%), Postives = 90/213 (42.25%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNY- 60
           MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV  K +Y 
Sbjct: 81  MICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYK 140

Query: 61  MKRDPTAPP------------------------------------RRGRGRPP--KPKVP 120
           +   P  PP                                    +RGRGRPP  KP V 
Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 200

Query: 121 LPSNV-------------ASSPPKPRGRPPKDPNAPPQPPKPVTMKVSSGTGKPRGRPRK 155
            P  +              S P + + +PP+ P  P QP K           +P GRPRK
Sbjct: 201 QPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK-----------RPPGRPRK 260

[Close]

BLAST of MC08g1806 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 67/188 (35.64%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 1   MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYM 60
           MI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   K +Y 
Sbjct: 71  MICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSYK 130

Query: 61  KRDPTAPP--------RRGRGRP-PKPKV-------PLPSNVASSPPK-PRGRPPK-DPN 120
               + PP           +G   P+ ++       P+ S  AS P K  RGRPPK  P 
Sbjct: 131 IAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPPKPKPE 190

Query: 121 APPQPPK--PVTMKVSSGTGKPRGRPRKLARPTSITAPPAPS-----GRPR--GRPPKAK 162
           + PQP +  P T +V +  G+P    +++  P  +  P   S     GRPR  G    A 
Sbjct: 191 SQPQPLQQLPPTNQVQA-NGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPAT 250

The following BLAST results are available for this feature:

BLAST of MC08g1806 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	1.9e-46	63.80	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	4.0e-44	64.74	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	1.9e-30	51.46	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	5.0e-26	50.00	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of MC08g1806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143283.1	2.45e-108	100.00	HMG-Y-related protein A-like [Momordica charantia]	[more]
XP_008456999.1	7.08e-92	87.73	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_022935331.1	1.11e-91	87.35	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
KAE8650587.1	9.32e-91	87.12	hypothetical protein Csa_009737 [Cucumis sativus]	[more]
XP_004145857.1	1.66e-90	87.12	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]

BLAST of MC08g1806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQC1	1.19e-108	100.00	HMG-Y-related protein A-like OS=Momordica charantia OX=3673 GN=LOC111013192 PE=3...	[more]
A0A5D3DJY3	3.43e-92	87.73	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	3.43e-92	87.73	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A6J1J6G8	5.39e-92	87.35	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	5.39e-92	87.35	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]

BLAST of MC08g1806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	1.4e-31	51.46	high mobility group A	[more]
AT1G48620.1	2.3e-10	34.27	high mobility group A5	[more]
AT3G18035.1	1.5e-09	35.64	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 121..138 score: 30.86 coord: 86..100 score: 30.37 coord: 8..25 score: 41.36
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 69..79 score: 69.32 coord: 89..100 score: 61.46 coord: 141..151 score: 68.56
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 120..132 e-value: 26.0 score: 7.2 coord: 143..155 e-value: 2.4 score: 13.1 coord: 91..103 e-value: 0.79 score: 15.8 coord: 69..81 e-value: 58.0 score: 5.3
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..58 e-value: 1.5E-11 score: 54.4
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..56 e-value: 3.6E-7 score: 30.4
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 1..63 score: 19.290428
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..68 e-value: 1.3E-10 score: 43.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..111
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..158
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..158
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1806.1	MC08g1806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding