MC08g1773 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1773
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	leucine-rich repeat extensin-like protein 3
Location	MC08: 25799480 .. 25799900 (+)
RNA-Seq Expression	MC08g1773
Synteny	MC08g1773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTCCTCTTCTCTCCTCTTCTCTTCTCCTCCTCTTCATTCTCCTCACCGACGCCGATACCTCACCGTTGGTATCGGTCGGTTTGGAGAATCCCGATGTCGAAATCAAATGTGGATCCTGCCCTTGTTCCAAGCCATGCATTCAGCGGTCGCCGCCGCCGTATTGCAACCCAGCGCTGTCACCCCCGCCACCGCCCCCGAGGTTCATTTATACGACAGGTGTTCCCGGTCACTTGTCACCGCCGCCACCGAGGTTCATTTATACGACCGGCGTCCCCGATAACGTGTACCAAACCGATGTGAACAGCCAATGGTATTATTTCTCCGGTGGAACGTCGCCGAAGCCAGCGGTCACGGCGGCACTGGTGGTGGCGCTTTGGCTGTGGAGCTTTGGATCTCATGGCGTTTGGTAAGTGG

mRNA sequence

ATGGCGCCTCCTCTTCTCTCCTCTTCTCTTCTCCTCCTCTTCATTCTCCTCACCGACGCCGATACCTCACCGTTGGTATCGGTCGGTTTGGAGAATCCCGATGTCGAAATCAAATGTGGATCCTGCCCTTGTTCCAAGCCATGCATTCAGCGGTCGCCGCCGCCGTATTGCAACCCAGCGCTGTCACCCCCGCCACCGCCCCCGAGGTTCATTTATACGACAGGTGTTCCCGGTCACTTGTCACCGCCGCCACCGAGGTTCATTTATACGACCGGCGTCCCCGATAACGTGTACCAAACCGATGTGAACAGCCAATGGTATTATTTCTCCGGTGGAACGTCGCCGAAGCCAGCGGTCACGGCGGCACTGGTGGTGGCGGGCTGTGGAGCTTTGGATCTCATGGCGTTTGGTAAGTGG

Coding sequence (CDS)

ATGGCGCCTCCTCTTCTCTCCTCTTCTCTTCTCCTCCTCTTCATTCTCCTCACCGACGCCGATACCTCACCGTTGGTATCGGTCGGTTTGGAGAATCCCGATGTCGAAATCAAATGTGGATCCTGCCCTTGTTCCAAGCCATGCATTCAGCGGTCGCCGCCGCCGTATTGCAACCCAGCGCTGTCACCCCCGCCACCGCCCCCGAGGTTCATTTATACGACAGGTGTTCCCGGTCACTTGTCACCGCCGCCACCGAGGTTCATTTATACGACCGGCGTCCCCGATAACGTGTACCAAACCGATGTGAACAGCCAATGGTATTATTTCTCCGGTGGAACGTCGCCGAAGCCAGCGGTCACGGCGGCACTGGTGGTGGCGGGCTGTGGAGCTTTGGATCTCATGGCGTTTGGTAAGTGG

Protein sequence

MAPPLLSSSLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQRSPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

Homology

[Close]

BLAST of MC08g1773 vs. NCBI nr
Match: KAG6581215.1 (hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (409), Expect = 3.28e-48
Identity = 83/138 (60.14%), Postives = 99/138 (71.74%), Query Frame = 0


Query: 9   SLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-------SPPPYCNPAL 68
           SL  LF+ L  AD+ P+  V L++P+ EIKCGSCPCS PC+++        PPP C PAL
Sbjct: 10  SLSFLFLFLHLADSQPVSPVDLQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPAL 69

Query: 69  SPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTA 128
            PPPPPPRFIYT+  P    PPPPRFIYTTGVP N+YQ D N++WYYFSG T  +PA  A
Sbjct: 70  PPPPPPPRFIYTSLSP----PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAA 129

Query: 129 ALVVAGCGALDLMAFGKW 139
            +V  GCGAL+LMAFGKW
Sbjct: 130 LVVALGCGALNLMAFGKW 143

[Close]

BLAST of MC08g1773 vs. NCBI nr
Match: KAG7017949.1 (hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160 bits (405), Expect = 1.21e-47
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 9   SLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR----SPPPYCNPALSPP 68
           SL  LF+ L  AD+ P+  V  ++P+ EIKCGSCPCS PC+++     PPP C PAL PP
Sbjct: 10  SLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPP 69

Query: 69  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALV 128
           PPPPRFIYT+  P    PPPPRFIYTTGVP N+YQ D N++WYYFSG T  +PA  A +V
Sbjct: 70  PPPPRFIYTSLSP----PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVV 129

Query: 129 VAGCGALDLMAFGKW 139
             GCGAL+LMAFGKW
Sbjct: 130 ALGCGALNLMAFGKW 140

[Close]

BLAST of MC08g1773 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (397), Expect = 2.33e-46
Identity = 81/138 (58.70%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 9   SLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-------SPPPYCNPAL 68
           SL  LF+ L  AD+ P   V  ++P+ EIKCGSCPCS PC+++        PPP C PAL
Sbjct: 12  SLSFLFLFLHLADSQPFSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPAL 71

Query: 69  SPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTA 128
            PPPPPPRFIYT   P    PPPPRFIYTTGVP N+YQ D N++WYYFSG T  +PA   
Sbjct: 72  PPPPPPPRFIYTALSP----PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNRPATAV 131

Query: 129 ALVVAGCGALDLMAFGKW 139
            +V  GCGAL+LMAFGKW
Sbjct: 132 LVVALGCGALNLMAFGKW 145

[Close]

BLAST of MC08g1773 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 153 bits (386), Expect = 9.99e-45
Identity = 80/137 (58.39%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 9   SLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR------SPPPYCNPALS 68
           SL  LF+ L  A++ P+  V  ++P+ EIKCGSCPCS PC+++       PPP C PAL 
Sbjct: 10  SLSFLFLFLHLANSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPNCKPALP 69

Query: 69  PPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAA 128
           PPPPPPRFIYT+  P    PPPPRFIYTTGVP N+YQ D N++WYYFSG T    A  A 
Sbjct: 70  PPPPPPRFIYTSLSP----PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNWSATAAL 129

Query: 129 LVVAGCGALDLMAFGKW 139
           +V  GCGAL+LMAFGKW
Sbjct: 130 VVALGCGALNLMAFGKW 142

[Close]

BLAST of MC08g1773 vs. NCBI nr
Match: KAA0060761.1 (formin-like protein 3 [Cucumis melo var. makuwa] >TYK01496.1 formin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 3.33e-44
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 5   LLSSSLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPY------- 64
           LLS S L L +LL  + TS  +S+  +NPD EIKCGSCPCS PCIQ+ SPPP        
Sbjct: 8   LLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPPPSP 67

Query: 65  CNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPK 124
           C P +S  PPPPRFIYT   P   +PPPPRF YTTGVP N+Y+ D N+ WYYFSG T  +
Sbjct: 68  CTPTVSSRPPPPRFIYTMSSP---APPPPRFTYTTGVPGNLYEIDANNSWYYFSGTTGTR 127

Query: 125 PAVTAALVVAGCGALDLMAFGKW 139
           P + A +V  GCGAL LM F KW
Sbjct: 128 PGMAAVVVALGCGALHLMGFSKW 147

[Close]

BLAST of MC08g1773 vs. ExPASy TrEMBL
Match: A0A6J1J7W0 (probable pathogenesis-related protein ARB_02861 OS=Cucurbita maxima OX=3661 GN=LOC111482528 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 4.84e-45
Identity = 80/137 (58.39%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 9   SLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR------SPPPYCNPALS 68
           SL  LF+ L  A++ P+  V  ++P+ EIKCGSCPCS PC+++       PPP C PAL 
Sbjct: 10  SLSFLFLFLHLANSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPNCKPALP 69

Query: 69  PPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAA 128
           PPPPPPRFIYT+  P    PPPPRFIYTTGVP N+YQ D N++WYYFSG T    A  A 
Sbjct: 70  PPPPPPRFIYTSLSP----PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNWSATAAL 129

Query: 129 LVVAGCGALDLMAFGKW 139
           +V  GCGAL+LMAFGKW
Sbjct: 130 VVALGCGALNLMAFGKW 142

[Close]

BLAST of MC08g1773 vs. ExPASy TrEMBL
Match: A0A5A7V4T2 (Formin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00500 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.61e-44
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 5   LLSSSLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPY------- 64
           LLS S L L +LL  + TS  +S+  +NPD EIKCGSCPCS PCIQ+ SPPP        
Sbjct: 8   LLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPPPSP 67

Query: 65  CNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPK 124
           C P +S  PPPPRFIYT   P   +PPPPRF YTTGVP N+Y+ D N+ WYYFSG T  +
Sbjct: 68  CTPTVSSRPPPPRFIYTMSSP---APPPPRFTYTTGVPGNLYEIDANNSWYYFSGTTGTR 127

Query: 125 PAVTAALVVAGCGALDLMAFGKW 139
           P + A +V  GCGAL LM F KW
Sbjct: 128 PGMAAVVVALGCGALHLMGFSKW 147

[Close]

BLAST of MC08g1773 vs. ExPASy TrEMBL
Match: A0A0A0L7R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 5.06e-42
Identity = 80/146 (54.79%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 5   LLSSSLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPY------- 64
           LLS S L   +LL ++ TS  + V  +NPD EIKCGSCPCS PCIQ+ SPPP        
Sbjct: 10  LLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPPPPP 69

Query: 65  ---CNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGT 124
              C P +S  PPPPRFIYTT  P   +PPPPRF YTTGVP N+Y+ D N+ WYYFSG  
Sbjct: 70  PSPCTPTVSSRPPPPRFIYTTSSP---APPPPRFTYTTGVPGNLYEIDANNSWYYFSGTR 129

Query: 125 SPKPAVTAALVVAGCGALDLMAFGKW 139
             +P + A  V  GCGAL LM F KW
Sbjct: 130 RTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of MC08g1773 vs. ExPASy TrEMBL
Match: A0A6J1GAW3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111452509 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.53e-29
Identity = 73/137 (53.28%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 8   SSLLLLFILLTDADTSPLVSVGLENPDVEIKCGSCP-CSKPCIQRSPPPYCNPALSPPP- 67
           S+ + L +LL+   TSP +S    +PD EI C S   CS P +Q+  P   +P L PPP 
Sbjct: 4   SAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQLQP---SPPLPPPPL 63

Query: 68  PPPRFIYTTGVPGHLSPPPP-RFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALV 127
           PPPRF YTT      SPPPP RFIYTTGVP ++YQ D  ++WYYFSG     PA+ AALV
Sbjct: 64  PPPRFTYTT----LSSPPPPLRFIYTTGVPSDLYQNDEKNRWYYFSGAVGKPPAM-AALV 123

Query: 128 VAG--CGALDLMAFGKW 139
           V G  CGALDL+ FGKW
Sbjct: 124 VVGLACGALDLIVFGKW 132

[Close]

BLAST of MC08g1773 vs. ExPASy TrEMBL
Match: A0A2C9WJS4 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115700 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.97e-20
Identity = 51/104 (49.04%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 31  ENPDVEIKCGSCPCSKPCIQRSPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYT 90
           + PD  IKCGSCPC  PC    PPP       PPPPPP   Y   +P    PPPPR IY 
Sbjct: 39  QEPDTGIKCGSCPCVNPCALPPPPP------PPPPPPPETTYCPPLPPPPPPPPPRCIYV 98

Query: 91  TGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLM 134
           T VP N+Y  D    W Y+ G    K  VT  L++AGCGAL LM
Sbjct: 99  TCVPGNLYVVDPYDNWDYYGGAR--KNVVTGLLLLAGCGALHLM 134

[Close]

BLAST of MC08g1773 vs. TAIR 10
Match: AT3G03350.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.5e-06
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 65  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALV 124
           PPPPR  Y +      SPPPP+++Y TGVP  +Y+T+ + QW Y S            +V
Sbjct: 30  PPPPRKTYCS--KSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNSSVNRNLVKCLLVIV 89

Query: 125 VAGCGALD 133
           + G G ++
Sbjct: 90  IVGFGVIN 95

[Close]

BLAST of MC08g1773 vs. TAIR 10
Match: AT3G03350.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.2e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 65  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFS 111
           PPPPR  Y +      SPPPP+++Y TGVP  +Y+T+ + QW Y S
Sbjct: 30  PPPPRKTYCS--KSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNS 73

[Close]

BLAST of MC08g1773 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 41.2 bits (95), Expect = 8.0e-04
Identity = 27/68 (39.71%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 44  CSKPCIQR----------SPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGV 102
           CS  CIQ            PPP C P  + PPPPP+ + +   P    PPP  F+Y TG 
Sbjct: 51  CSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYCPP----PPPANFLYITGP 110

The following BLAST results are available for this feature:

BLAST of MC08g1773 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1773 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581215.1	3.28e-48	60.14	hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017949.1	1.21e-47	60.74	hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023528316.1	2.33e-46	58.70	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022984145.1	9.99e-45	58.39	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
KAA0060761.1	3.33e-44	56.64	formin-like protein 3 [Cucumis melo var. makuwa] >TYK01496.1 formin-like protein...	[more]

BLAST of MC08g1773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7W0	4.84e-45	58.39	probable pathogenesis-related protein ARB_02861 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7V4T2	1.61e-44	56.64	Formin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A0A0L7R0	5.06e-42	54.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]
A0A6J1GAW3	1.53e-29	53.28	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A2C9WJS4	1.97e-20	49.04	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115700 PE=4 SV=...	[more]

BLAST of MC08g1773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03350.2	6.5e-06	36.76	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G03350.1	3.2e-05	47.83	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G23040.1	8.0e-04	39.71	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 28..135
None	No IPR available	PANTHER	PTHR35094:SF7	PROTEIN, PUTATIVE-RELATED	coord: 28..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1773.1	MC08g1773.1	mRNA