MC08g1568 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1568
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein Ycf2
Location	MC08: 22788139 .. 22788222 (+)
RNA-Seq Expression	MC08g1568
Synteny	MC08g1568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGT

mRNA sequence

TCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGT

Coding sequence (CDS)

TCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGT

Protein sequence

STLTTEKRIDQILLSLTHSDHLSKNDSG

Homology

[Close]

BLAST of MC08g1568 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1524 STLTTEKRIDQILLSLTHSDHLSKNDSG 1551

[Close]

BLAST of MC08g1568 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1229 STLTTEKRIDQILLSLTHSDHLSKNDSG 1256

[Close]

BLAST of MC08g1568 vs. ExPASy Swiss-Prot
Match: Q0G9Q1 (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1322 STLTTEKRIDQILLSLTHSDHLSKNDSG 1349

[Close]

BLAST of MC08g1568 vs. ExPASy Swiss-Prot
Match: A6MMQ1 (Protein Ycf2 OS=Dioscorea elephantipes OX=145284 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1504 STLTTEKRIDQILLSLTHSDHLSKNDSG 1531

[Close]

BLAST of MC08g1568 vs. ExPASy Swiss-Prot
Match: Q06GT4 (Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1537 STLTTEKRIDQILLSLTHSDHLSKNDSG 1564

[Close]

BLAST of MC08g1568 vs. NCBI nr
Match: VVW84357.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 57.0 bits (136), Expect = 9.60e-10
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 8  STLTTEKRIDQILLSLTHSDHLSKNDSG 35

[Close]

BLAST of MC08g1568 vs. NCBI nr
Match: VVW90598.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 57.0 bits (136), Expect = 1.10e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 8  STLTTEKRIDQILLSLTHSDHLSKNDSG 35

[Close]

BLAST of MC08g1568 vs. NCBI nr
Match: MBA0659398.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 57.0 bits (136), Expect = 3.65e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 44 STLTTEKRIDQILLSLTHSDHLSKNDSG 71

[Close]

BLAST of MC08g1568 vs. NCBI nr
Match: VVW93099.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 57.0 bits (136), Expect = 4.17e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 29 STLTTEKRIDQILLSLTHSDHLSKNDSG 56

[Close]

BLAST of MC08g1568 vs. NCBI nr
Match: VVW88503.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 57.0 bits (136), Expect = 6.46e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 29 STLTTEKRIDQILLSLTHSDHLSKNDSG 56

[Close]

BLAST of MC08g1568 vs. ExPASy TrEMBL
Match: A0A5K1HBC3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS28964 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.65e-10
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 8  STLTTEKRIDQILLSLTHSDHLSKNDSG 35

[Close]

BLAST of MC08g1568 vs. ExPASy TrEMBL
Match: A0A5K1HT09 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30716 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.32e-10
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 8  STLTTEKRIDQILLSLTHSDHLSKNDSG 35

[Close]

BLAST of MC08g1568 vs. ExPASy TrEMBL
Match: A0A7J8V9C7 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_011538 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.77e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 44 STLTTEKRIDQILLSLTHSDHLSKNDSG 71

[Close]

BLAST of MC08g1568 vs. ExPASy TrEMBL
Match: A0A5K1HUL0 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS31384 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.02e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 29 STLTTEKRIDQILLSLTHSDHLSKNDSG 56

[Close]

BLAST of MC08g1568 vs. ExPASy TrEMBL
Match: A0A5K1HKN4 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30103 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.13e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  STLTTEKRIDQILLSLTHSDHLSKNDSG 28
          STLTTEKRIDQILLSLTHSDHLSKNDSG
Sbjct: 29 STLTTEKRIDQILLSLTHSDHLSKNDSG 56

[Close]

BLAST of MC08g1568 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STL  EKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1538 STLRAEKRIDQILLSLTHSDHLSKNDSG 1565

[Close]

BLAST of MC08g1568 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1    STLTTEKRIDQILLSLTHSDHLSKNDSG 29
            STL  EKRIDQILLSLTHSDHLSKNDSG
Sbjct: 1538 STLRAEKRIDQILLSLTHSDHLSKNDSG 1565

The following BLAST results are available for this feature:

BLAST of MC08g1568 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM80	3.0e-08	100.00	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	3.0e-08	100.00	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q0G9Q1	3.0e-08	100.00	Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1	[more]
A6MMQ1	3.0e-08	100.00	Protein Ycf2 OS=Dioscorea elephantipes OX=145284 GN=ycf2-A PE=3 SV=1	[more]
Q06GT4	3.0e-08	100.00	Protein Ycf2 OS=Drimys granadensis OX=224735 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MC08g1568 vs. NCBI nr


Match Name	E-value	Identity	Description
VVW84357.1	9.60e-10	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW90598.1	1.10e-09	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
MBA0659398.1	3.65e-09	100.00	hypothetical protein [Gossypium klotzschianum]	[more]
VVW93099.1	4.17e-09	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW88503.1	6.46e-09	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]

BLAST of MC08g1568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K1HBC3	4.65e-10	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS28...	[more]
A0A5K1HT09	5.32e-10	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A7J8V9C7	1.77e-09	100.00	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_011538 PE=4...	[more]
A0A5K1HUL0	2.02e-09	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS31...	[more]
A0A5K1HKN4	3.13e-09	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]

BLAST of MC08g1568 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	4.1e-08	92.86	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	4.1e-08	92.86	Chloroplast Ycf2;ATPase, AAA type, core	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1568.1	MC08g1568.1	mRNA