MC08g1543 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1543
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 25-like
LocationMC08: 21969985 .. 21970206 (-)
RNA-Seq ExpressionMC08g1543
SyntenyMC08g1543
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTCTCTTGCAATTCTCTGGTTTATCTGGCTTCTCTTGGTGGCTGCAGCCTCTCATGCCACCGGAGTACCGCCGGTCGAGTTAGCAGCTGAATCAAGTGCAATTTTCAGAGAGACGGCGGCCGGTGGCGGCGCCGGCGGCAAGCTTGTTCATCCGCAGTGGCATCTGAACTACATGAGCAAAAGAAGAGTTCCCAATGGCCCAGATCCTATTCATAACAGG

mRNA sequence

GGCTCTCTTGCAATTCTCTGGTTTATCTGGCTTCTCTTGGTGGCTGCAGCCTCTCATGCCACCGGAGTACCGCCGGTCGAGTTAGCAGCTGAATCAAGTGCAATTTTCAGAGAGACGGCGGCCGGTGGCGGCGCCGGCGGCAAGCTTGTTCATCCGCAGTGGCATCTGAACTACATGAGCAAAAGAAGAGTTCCCAATGGCCCAGATCCTATTCATAACAGG

Coding sequence (CDS)

GGCTCTCTTGCAATTCTCTGGTTTATCTGGCTTCTCTTGGTGGCTGCAGCCTCTCATGCCACCGGAGTACCGCCGGTCGAGTTAGCAGCTGAATCAAGTGCAATTTTCAGAGAGACGGCGGCCGGTGGCGGCGCCGGCGGCAAGCTTGTTCATCCGCAGTGGCATCTGAACTACATGAGCAAAAGAAGAGTTCCCAATGGCCCAGATCCTATTCATAACAGG

Protein sequence

GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMSKRRVPNGPDPIHNR
Homology
BLAST of MC08g1543 vs. NCBI nr
Match: XP_022158662.1 (CLAVATA3/ESR (CLE)-related protein 25-like [Momordica charantia])

HSP 1 Score: 153 bits (387), Expect = 1.28e-46
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS 60
          GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS
Sbjct: 12 GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS 71

Query: 61 KRRVPNGPDPIHNR 74
          KRRVPNGPDPIHNR
Sbjct: 72 KRRVPNGPDPIHNR 85

BLAST of MC08g1543 vs. NCBI nr
Match: XP_004146759.1 (uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical protein Csa_003437 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.84e-18
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  GSLAILWFIWLLLVAAASH-----ATGVPPVELAAESSAIFRET--AAGGGAGGKLV-HP 60
          GSL ++ FIWLLL   +         G        E S I +ET  A GGG GGK+V HP
Sbjct: 11 GSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGGGRGGKVVDHP 70

Query: 61 QWHLNYMSKRRVPNGPDPIHNR 74
          +WHLNYMSKRRVPNGPDPIHNR
Sbjct: 71 EWHLNYMSKRRVPNGPDPIHNR 92

BLAST of MC08g1543 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 1.76e-17
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 2  SLAILWFIWLLLVAAA-----SHATGVPPVELAAESSAIFRETAAGGGAGGK-LVHPQWH 61
          ++A++ FIWLLLV  +     S ATG+  +  AA+   I +E    GG GGK +V  +WH
Sbjct: 10 AMAVMGFIWLLLVNGSHQRGQSVATGMMTITTAAQFGGISKEMEVVGGRGGKDVVRSEWH 69

Query: 62 LNYMSKRRVPNGPDPIHNR 74
          LNYMSKRRVPNGPDPIHNR
Sbjct: 70 LNYMSKRRVPNGPDPIHNR 88

BLAST of MC08g1543 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 3.55e-17
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 2  SLAILWFIWLLLVAAA-----SHATGVPPVELAAESSAIFRETAAGGGAGGK-LVHPQWH 61
          ++A++ FIWLLLV  +     S ATG+     AA+   I +E    GG GGK +V  +WH
Sbjct: 10 AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVVRSEWH 69

Query: 62 LNYMSKRRVPNGPDPIHNR 74
          LNYMSKRRVPNGPDPIHNR
Sbjct: 70 LNYMSKRRVPNGPDPIHNR 88

BLAST of MC08g1543 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 1.25e-16
Identity = 44/85 (51.76%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 1  GSLAILWFIWLLLV-----------AAASHATGVPPVELAAESSAIFRETAAGGGAGGKL 60
           SLA++ FI+LLLV           A    AT      + AE S I +E     G  GK+
Sbjct: 12 NSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKEMKVVHGGRGKV 71

Query: 61 VHPQWHLNYMSKRRVPNGPDPIHNR 74
          VHP+WHLNYMSKRRVPNGPDPIHNR
Sbjct: 72 VHPEWHLNYMSKRRVPNGPDPIHNR 96

BLAST of MC08g1543 vs. ExPASy TrEMBL
Match: A0A6J1DXT1 (CLAVATA3/ESR (CLE)-related protein 25-like OS=Momordica charantia OX=3673 GN=LOC111025127 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 6.19e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS 60
          GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS
Sbjct: 12 GSLAILWFIWLLLVAAASHATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWHLNYMS 71

Query: 61 KRRVPNGPDPIHNR 74
          KRRVPNGPDPIHNR
Sbjct: 72 KRRVPNGPDPIHNR 85

BLAST of MC08g1543 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.34e-18
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  GSLAILWFIWLLLVAAASH-----ATGVPPVELAAESSAIFRET--AAGGGAGGKLV-HP 60
          GSL ++ FIWLLL   +         G        E S I +ET  A GGG GGK+V HP
Sbjct: 11 GSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGGGRGGKVVDHP 70

Query: 61 QWHLNYMSKRRVPNGPDPIHNR 74
          +WHLNYMSKRRVPNGPDPIHNR
Sbjct: 71 EWHLNYMSKRRVPNGPDPIHNR 92

BLAST of MC08g1543 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.72e-17
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 2  SLAILWFIWLLLVAAA-----SHATGVPPVELAAESSAIFRETAAGGGAGGK-LVHPQWH 61
          ++A++ FIWLLLV  +     S ATG+     AA+   I +E    GG GGK +V  +WH
Sbjct: 10 AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVVRSEWH 69

Query: 62 LNYMSKRRVPNGPDPIHNR 74
          LNYMSKRRVPNGPDPIHNR
Sbjct: 70 LNYMSKRRVPNGPDPIHNR 88

BLAST of MC08g1543 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.40e-16
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 2  SLAILWFIWLLLVAAA-----SHATGVPPVELAAESSAIFRETAAGGGAGGK-LVHPQWH 61
          ++A++ FIWLLLV  +     S ATG+     AA+   I +E    GG GGK +V  +WH
Sbjct: 10 AMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVVGGRGGKDVVRSEWH 69

Query: 62 LNYMSKRRVPNGPDPIHNR 74
          LNY+SKRRVPNGPDPIHNR
Sbjct: 70 LNYVSKRRVPNGPDPIHNR 88

BLAST of MC08g1543 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.15e-16
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 1  GSLAILWFIWLLLVAAASH-----ATGVPPVELAAESSAIFRETAAGGGAGGKLVHPQWH 60
          GSL ++ FIWLLL   +         G     +  E S +F++T    G G    HP+WH
Sbjct: 13 GSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVGGGKVADHPEWH 72

Query: 61 LNYMSKRRVPNGPDPIHNR 74
          LNYMSKRRVPNGPDPIHNR
Sbjct: 73 LNYMSKRRVPNGPDPIHNR 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022158662.11.28e-46100.00CLAVATA3/ESR (CLE)-related protein 25-like [Momordica charantia][more]
XP_004146759.14.84e-1856.10uncharacterized protein LOC101209880 [Cucumis sativus] >KGN47786.1 hypothetical ... [more]
XP_023521565.11.76e-1754.43uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.... [more]
XP_022946527.13.55e-1754.43uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3... [more]
XP_038886261.11.25e-1651.76uncharacterized protein LOC120076488 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DXT16.19e-47100.00CLAVATA3/ESR (CLE)-related protein 25-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KJ252.34e-1856.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1[more]
A0A6J1G3Y81.72e-1754.43uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1KBR71.40e-1653.16uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028... [more]
A0A5A7TRB32.15e-1649.37Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039316CLAVATA3/ESR (CLE)-related protein 25/26PANTHERPTHR34277CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 2..74
NoneNo IPR availablePANTHERPTHR34277:SF2CLAVATA3/ESR (CLE)-RELATED PROTEIN 26coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1543.1MC08g1543.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment