MC08g1531 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1531
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PsbP domain-containing protein
Location	MC08: 21670489 .. 21673393 (+)
RNA-Seq Expression	MC08g1531
Synteny	MC08g1531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATGGCGTCTCTTCCTTCTCCCTCACCGAGCGCTGTAATCCAGCGCCCTCGTCCATGGCGGTTCAGAGAATCATCACTCTCCAATGGTAATCTTCTGCACCCATCTTCCTCACCATTTACTTCATGCTCCATTTCAAAGCCCTAACTTCTTGCTTCTTCATTTCAGGAATCGCCATTCATATCCGCTCGAAGTCAAAACCCGGCGTTCTCTGCTCCTGCAACAACATTGACATCTCCGATCCACAGCTCTGGTAACTCGAGCTCTCTTCTTCAATTGCAACCGTTACTTATTTTCTTGTGCAGTTCCAACGCTCGTTCCTTCTGATTGTTCTTAGTTATTGGGCGAGTGGAGTCAATAGACGAGAAATTATGCTAGGGATTGCATTGAGCACGTTTTCTTTTCAAGCTGTGGTTTCTAATTCCTTGGCTGAGAGTGGTACTGATTTTGCCTTTCTTCCTCTCGAGCGTGTTCTCAGAAATTACATTATGATTATCCTCCTTTGGTATTGTGTTATTTGGAGATTGAGTGCATTCAGTTTCGAGTGATAGTTGTTGTCGCTGAGGATTTTCGGACGTACACGGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGGTGTGTGGCTTGGCTCCATTGACGGAGCTTTTCGTTTAGAGAATTAGAGATTAATCGAGTTAATTGATTAGTTGAATTTGTGCGATTTATGTAGATTGGGTTGTGGGTAATGGTGAACCGAATGGATTCAAGTCGGTTACGGCTTTTTATCCCCAAGAAACTTCAAGTTCCAATGGTATTTTCAGATCTTCTCCCCAGTTCTCTTCCTGCCTCGTTAGTTTTGAATATTTTGATAAACTGAAATCTGGTTCAGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTATGAATTTCATATCATTTTGCAGTTTCTGAATGAAAATATAATAGCCAAAATGGGTTCTCTTCCTTTGCAGTCTTTGAATGGAAATAGAAAGCCAAAATTTGGATTTCCCTCTTCTCTTTCAGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGTAAGTGGCACATAAAAACTTGTTTATGAAACATAGTAGGATTTGTCAACAAGTTGTCCTGTTGTATGGCTTTTTTACCATAGCATTTCCAGTTCTTGATACTACTACTGCGTTTCCTAGTATGTTATCAAGAATTAGATTGGTGTTTTTAATGTCATAATATAATGAATGGGGTTTGATTTGAAAATTTTGGCAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAAGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGTACAACAGACTTTACACCATAACAGGACAGGTGACTTGCTCAAAAACACTTATCTTGTTCTTTACTCTGTGTTTTAGTTCATAGTCTTTTCATATAAAAGCATTTTAATCTTGAAATCCTTTTTTTTTTTGGTGAACTGTTAACCAAAAACCTTGCGTAATCTTTTCTTTATTTGCTACATGGACAATCGTATTTAAAACCACTTGTAGTAGATCTTTGGAGGTTTAAACAGGTTCGAGTTAGTATAGAAAATTAATGGCAAGGACTAGAACAGTTTTTGGTGCAAAGTTAAGAGATTAATATAGAACATTTGATAGTTGAATGACTTAAATGATCGAAATTGAATGAATATAAAAGCAGTGAGACCAAAATAAGATTTAAACATAGCTGGAAAATCATTATTTTCTCATTTTCATAATTATTGGAATGTTTTCTGTAGTATGCAGATGAAGAATCGGAGAACTATAGTTCCAAAATTGAGAAGGTGAGTGAGAGATACTATCCCAAGGGACTTTTTCTTCTTCTTCTTCCTCCTTTTTTTTTTCTAATTTAATTTAAATTAATTAATTAATTATTATTATAATAAAAAATATAGCTAATTATTACAATATAACGATTTGCAAATTATTTTAAAAAATAAAGCTGTTTTAATTCTCCGCCACTAGCTATGTAGCCACTTTTTATTTTATTTGTTTTACCATTAGATTTTCTTTTTAATTAAAAAAACTTCCAAGGTCGTGGTTGTTCGGTTTCAAAAGTTTTTATGAAATATTTTTGTCAAAGACAGGTGCTTTAACTAGTTGAATTGCCCGAGAAGAGAATGATGTTGCAGGAGACTATGGAAAAGATTTTGCAAATCAAGATTTTAAAATTCTCTCCGGTGGGTACTTCTATAATTTTAGAGATTAAAATATTTTTTTTTATATGTTTTAGGGTTTTATAAAAGAGATGTCAAATCTGATTTCAGAATTCAGAGTTAAAAGAAATATATGCCTGGGAAAAGATCTCTGCCTCCACAAATAATAGCCGTTCATTAGGGAGATCATTTTTTTAAAAAATAAAGTTATCCACATGGTTTCCACATGCAGTGATTTTAAAAAGAATATATATATATATAATTTATGAGGAGACGATGAGTTGGACTAGATCGTCTCTTGGCATAGAATTAAAACAGCATTATTTTTTTAAAAAAAATAGTTTGTAATTTGTTATATTTTAATAATTAGTTATATATATTTTTTATAATAAGTCCCTATCCCAAGCTTTAGTTATTAATTTCCATATTATCCATTCACTGAAAAGTGGGAGTGAACATTGGCTTTGTAGGTCGTCAATTCCTTCTCTTTCATTTGATGAATTGCAGTACAGGTCTCCGCTACACCATTGGTTATGGGGTTAAAATTTTTTCACCTTGGCTCCCAATTATGCTGCCTTTTCTTTTTGTTCCATTTCTTATTGTGATN

mRNA sequence

AGCATGGCGTCTCTTCCTTCTCCCTCACCGAGCGCTGTAATCCAGCGCCCTCGTCCATGGCGGTTCAGAGAATCATCACTCTCCAATGGAATCGCCATTCATATCCGCTCGAAGTCAAAACCCGGCGTTCTCTGCTCCTGCAACAACATTGACATCTCCGATCCACAGCTCTGTTATTGGGCGAGTGGAGTCAATAGACGAGAAATTATGCTAGGGATTGCATTGAGCACGTTTTCTTTTCAAGCTGTGGTTTCTAATTCCTTGGCTGAGAGTGGTACTGATTTTGCCTTTCTTCCTCTCGAGCTGATAGTTGTTGTCGCTGAGGATTTTCGGACGTACACGGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGGTTGTGGGTAATGGTGAACCGAATGGATTCAAGTCGGTTACGGCTTTTTATCCCCAAGAAACTTCAAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAAGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGTACAACAGACTTTACACCATAACAGGACAGTATGCAGATGAAGAATCGGAGAACTATAGTTCCAAAATTGAGAAGGTCGTCAATTCCTTCTCTTTCATTTGATGAATTGCAGTACAGGTCTCCGCTACACCATTGGTTATGGGGTTAAAATTTTTTCACCTTGGCTCCCAATTATGCTGCCTTTTCTTTTTGTTCCATTTCTTATTGTGATN

Coding sequence (CDS)

AGCATGGCGTCTCTTCCTTCTCCCTCACCGAGCGCTGTAATCCAGCGCCCTCGTCCATGGCGGTTCAGAGAATCATCACTCTCCAATGGAATCGCCATTCATATCCGCTCGAAGTCAAAACCCGGCGTTCTCTGCTCCTGCAACAACATTGACATCTCCGATCCACAGCTCTGTTATTGGGCGAGTGGAGTCAATAGACGAGAAATTATGCTAGGGATTGCATTGAGCACGTTTTCTTTTCAAGCTGTGGTTTCTAATTCCTTGGCTGAGAGTGGTACTGATTTTGCCTTTCTTCCTCTCGAGCTGATAGTTGTTGTCGCTGAGGATTTTCGGACGTACACGGATGAAGCGAATAAGTTCAGATTGGTGATTCCTCAAGATTGGGTTGTGGGTAATGGTGAACCGAATGGATTCAAGTCGGTTACGGCTTTTTATCCCCAAGAAACTTCAAGTTCCAATGTCAGTGTTGTAATCTCGGGGCTTGGTCCTGATTTCACGAGAATGGAATCCTTTGGCAAGGTTGAAGAATTTGCTGATACCCTGGTGAGCGGACTGGACAGAAGCTGGAAAAGGCCACCAGGTGTGGCGGCGAAACTTATAGACTGTAGATCATCTAAAGGGATATATTACATAGAGTACACGCTGCAGAATCCAGGTGAAAGCCGCAAACATTTATACTCTGCAATTGGGATGGCATCCAATGGCTGGTACAACAGACTTTACACCATAACAGGACAGTATGCAGATGAAGAATCGGAGAACTATAGTTCCAAAATTGAGAAGGTCGTCAATTCCTTCTCTTTCATTTGA

Protein sequence

SMASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWASGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFRLVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESENYSSKIEKVVNSFSFI

Homology

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BLAST of MC08g1531 vs. ExPASy Swiss-Prot
Match: Q9S720 (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-77
Identity = 148/255 (58.04%), Postives = 177/255 (69.41%), Query Frame = 0


Query: 19  PWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWAS----GVNRREIMLGIA 78
           PW     S SN       S+    +  + + +D S+ +    +S    G+ RR++ML IA
Sbjct: 6   PWLSSPQSFSNPRVTITDSRRCSSISAAISVLDSSNEEQHRISSRDHVGMKRRDVMLQIA 65

Query: 79  LSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFRLVIPQDWVVGNGE 138
            S F     +S + AE+               +E FR YTDE NKF + IPQDW VG  E
Sbjct: 66  SSVFFLPLAISPAFAETN-------------ASEAFRVYTDETNKFEISIPQDWQVGQAE 125

Query: 139 PNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPG 198
           PNGFKS+TAFYPQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P G
Sbjct: 126 PNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVG 185

Query: 199 VAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESEN 258
           V AKLID R+SKG YYIEYTLQNPGE+RKHLYSAIGMA+NGWYNRLYT+TGQ+ DEES  
Sbjct: 186 VTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAE 245

Query: 259 YSSKIEKVVNSFSFI 270
            SSKI+K V SF FI
Sbjct: 246 QSSKIQKTVKSFRFI 247

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BLAST of MC08g1531 vs. NCBI nr
Match: XP_022155885.1 (psbP domain-containing protein 3, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 508 bits (1307), Expect = 4.70e-181
Identity = 256/268 (95.52%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA
Sbjct: 1   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREIMLGIALSTFSFQAVVSNSLAES            VVVAEDFRTYTDEANKFR
Sbjct: 61  SGVNRREIMLGIALSTFSFQAVVSNSLAES------------VVVAEDFRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           TITGQYADEESENYSSKIEKVVNSFSFI
Sbjct: 241 TITGQYADEESENYSSKIEKVVNSFSFI 256

[Close]

BLAST of MC08g1531 vs. NCBI nr
Match: XP_022155884.1 (psbP domain-containing protein 3, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 464 bits (1194), Expect = 1.26e-163
Identity = 233/245 (95.10%), Postives = 233/245 (95.10%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA
Sbjct: 1   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREIMLGIALSTFSFQAVVSNSLAES            VVVAEDFRTYTDEANKFR
Sbjct: 61  SGVNRREIMLGIALSTFSFQAVVSNSLAES------------VVVAEDFRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 233

Query: 242 TITGQ 246
           TITGQ
Sbjct: 241 TITGQ 233

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BLAST of MC08g1531 vs. NCBI nr
Match: XP_038885576.1 (psbP domain-containing protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 436 bits (1121), Expect = 9.01e-153
Identity = 225/268 (83.96%), Postives = 237/268 (88.43%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSP  SAVIQRPR WRF +SS SNG+ I IRSK +  V CS NNI+IS+ Q CYWA
Sbjct: 1   MASLPSP--SAVIQRPRSWRFSQSSPSNGLPIPIRSKLR--VFCSGNNINISNQQSCYWA 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREIMLGI L+ FSFQ VVSN+LAES            V+VAED+RTYTDEANKFR
Sbjct: 61  SGVNRREIMLGIGLTAFSFQEVVSNALAES------------VMVAEDYRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           L IPQDW VGNGEPNGFKSVTAF+PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LAIPQDWQVGNGEPNGFKSVTAFFPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLI+CRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLINCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           TITGQYADEESENYSSKIEKVVNSF+FI
Sbjct: 241 TITGQYADEESENYSSKIEKVVNSFTFI 252

[Close]

BLAST of MC08g1531 vs. NCBI nr
Match: XP_022946502.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita moschata] >KAG6599083.1 PsbP domain-containing protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407 bits (1047), Expect = 1.62e-141
Identity = 210/268 (78.36%), Postives = 227/268 (84.70%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSP  SAVIQRPR WRF  SSLSNGIAI IR++ +  V CS  NIDI D + C W 
Sbjct: 1   MASLPSP--SAVIQRPRSWRFTPSSLSNGIAIPIRTRLR--VFCSGKNIDIPDQKPCCWT 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREI+LG+ L+ FSFQ VVS +LAES             VVAED+RTYTDEANKFR
Sbjct: 61  SGVNRREIVLGMGLTAFSFQEVVSIALAES-------------VVAEDYRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDW VGNGEPNGFK VTAF+P+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWQVGNGEPNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           T+TGQY DE+SE +SS+I+KVVNSF+FI
Sbjct: 241 TVTGQYGDEDSEKFSSEIKKVVNSFTFI 251

[Close]

BLAST of MC08g1531 vs. NCBI nr
Match: XP_023546046.1 (psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405 bits (1041), Expect = 1.33e-140
Identity = 209/268 (77.99%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSP  SAVIQRPR WRF  SSLSNGIAI IR++ +  V CS  NIDI D + C W 
Sbjct: 1   MASLPSP--SAVIQRPRSWRFTPSSLSNGIAIPIRTRLR--VFCSGKNIDIPDQKPCCWT 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREI+LG+ L+ FSFQ VVS +LAES             VVAED+RTY DEANKFR
Sbjct: 61  SGVNRREIVLGMGLTAFSFQEVVSIALAES-------------VVAEDYRTYIDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDW VGNGEPNGFK VTAF+P+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWQVGNGEPNGFKLVTAFFPRETLSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           T+TGQY DE+SE +SS+I+KVVNSF+FI
Sbjct: 241 TVTGQYGDEDSEKFSSEIKKVVNSFTFI 251

[Close]

BLAST of MC08g1531 vs. ExPASy TrEMBL
Match: A0A6J1DNN6 (psbP domain-containing protein 3, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022894 PE=4 SV=1)

HSP 1 Score: 508 bits (1307), Expect = 2.28e-181
Identity = 256/268 (95.52%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA
Sbjct: 1   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREIMLGIALSTFSFQAVVSNSLAES            VVVAEDFRTYTDEANKFR
Sbjct: 61  SGVNRREIMLGIALSTFSFQAVVSNSLAES------------VVVAEDFRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           TITGQYADEESENYSSKIEKVVNSFSFI
Sbjct: 241 TITGQYADEESENYSSKIEKVVNSFSFI 256

[Close]

BLAST of MC08g1531 vs. ExPASy TrEMBL
Match: A0A6J1DRN2 (psbP domain-containing protein 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022894 PE=4 SV=1)

HSP 1 Score: 464 bits (1194), Expect = 6.10e-164
Identity = 233/245 (95.10%), Postives = 233/245 (95.10%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA
Sbjct: 1   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREIMLGIALSTFSFQAVVSNSLAES            VVVAEDFRTYTDEANKFR
Sbjct: 61  SGVNRREIMLGIALSTFSFQAVVSNSLAES------------VVVAEDFRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 233

Query: 242 TITGQ 246
           TITGQ
Sbjct: 241 TITGQ 233

[Close]

BLAST of MC08g1531 vs. ExPASy TrEMBL
Match: A0A6J1G3W9 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450544 PE=4 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 7.86e-142
Identity = 210/268 (78.36%), Postives = 227/268 (84.70%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSP  SAVIQRPR WRF  SSLSNGIAI IR++ +  V CS  NIDI D + C W 
Sbjct: 1   MASLPSP--SAVIQRPRSWRFTPSSLSNGIAIPIRTRLR--VFCSGKNIDIPDQKPCCWT 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREI+LG+ L+ FSFQ VVS +LAES             VVAED+RTYTDEANKFR
Sbjct: 61  SGVNRREIVLGMGLTAFSFQEVVSIALAES-------------VVAEDYRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDW VGNGEPNGFK VTAF+P+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWQVGNGEPNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           T+TGQY DE+SE +SS+I+KVVNSF+FI
Sbjct: 241 TVTGQYGDEDSEKFSSEIKKVVNSFTFI 251

[Close]

BLAST of MC08g1531 vs. ExPASy TrEMBL
Match: A0A6J1KI01 (psbP domain-containing protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494008 PE=4 SV=1)

HSP 1 Score: 405 bits (1040), Expect = 9.15e-141
Identity = 209/268 (77.99%), Postives = 226/268 (84.33%), Query Frame = 0


Query: 2   MASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWA 61
           MASLPSP  SAVIQRPR WRF  SSLSNGIAI IR++ +  V CS  NIDI D + C W 
Sbjct: 1   MASLPSP--SAVIQRPRSWRFTPSSLSNGIAIPIRTRLR--VFCSGKNIDIPDQKPCCWT 60

Query: 62  SGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFR 121
           SGVNRREI LG+ L+ FSFQ VVS +LAE+             VVAED+RTYTDEANKFR
Sbjct: 61  SGVNRREIGLGMGLTAFSFQEVVSIALAEN-------------VVAEDYRTYTDEANKFR 120

Query: 122 LVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTL 181
           LVIPQDW VGNGEPNGFK VTAF+P+ET SSNVSVVISGLGPDFTRMESFGKVEEFADTL
Sbjct: 121 LVIPQDWQVGNGEPNGFKLVTAFFPKETLSSNVSVVISGLGPDFTRMESFGKVEEFADTL 180

Query: 182 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLY 241
           VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGE R HLYSAIGMASNGWYNRLY
Sbjct: 181 VSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGEGRNHLYSAIGMASNGWYNRLY 240

Query: 242 TITGQYADEESENYSSKIEKVVNSFSFI 269
           T+TGQY DE+SE +SS+I+KVVNSF+FI
Sbjct: 241 TVTGQYGDEDSEKFSSEIKKVVNSFTFI 251

[Close]

BLAST of MC08g1531 vs. ExPASy TrEMBL
Match: A0A0A0KDI5 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401450 PE=4 SV=1)

HSP 1 Score: 393 bits (1010), Expect = 4.19e-136
Identity = 211/271 (77.86%), Postives = 227/271 (83.76%), Query Frame = 0


Query: 1   SMASLPSPSPSAVIQRPRPWRFRESSLSNGIAIHIRSKSKPGVLCSCN--NIDISDPQLC 60
           +MASL SP  SAVI RP   RF +SSLSNG +I I  +S   V CS N  +I  S+ +  
Sbjct: 2   AMASLLSP--SAVILRPHSLRFSQSSLSNGFSI-IPIRSTLRVFCSANGNSIHTSNKKPS 61

Query: 61  YWASGVNRREIMLGIALSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEAN 120
           Y ASGVNRREIMLGI  + FSFQ V SN+LAES            VVVAED+RTYTDEAN
Sbjct: 62  YLASGVNRREIMLGIGFTAFSFQEVGSNALAES------------VVVAEDYRTYTDEAN 121

Query: 121 KFRLVIPQDWVVGNGEPNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFA 180
           KF LVIPQDW VGNGEPNGFKSVTAF+PQETS+SNVSVVISGLGPD+TRMESFGKVEEFA
Sbjct: 122 KFSLVIPQDWQVGNGEPNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFA 181

Query: 181 DTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYN 240
           DTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGM+SNGWYN
Sbjct: 182 DTLVSGLDRSWKRPPGVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYN 241

Query: 241 RLYTITGQYADEESENYSSKIEKVVNSFSFI 269
           RLYTITGQYADEESE+YSSKIEKVVNSF+FI
Sbjct: 242 RLYTITGQYADEESESYSSKIEKVVNSFAFI 257

[Close]

BLAST of MC08g1531 vs. TAIR 10
Match: AT1G76450.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-78
Identity = 148/255 (58.04%), Postives = 177/255 (69.41%), Query Frame = 0


Query: 19  PWRFRESSLSNGIAIHIRSKSKPGVLCSCNNIDISDPQLCYWAS----GVNRREIMLGIA 78
           PW     S SN       S+    +  + + +D S+ +    +S    G+ RR++ML IA
Sbjct: 6   PWLSSPQSFSNPRVTITDSRRCSSISAAISVLDSSNEEQHRISSRDHVGMKRRDVMLQIA 65

Query: 79  LSTFSFQAVVSNSLAESGTDFAFLPLELIVVVAEDFRTYTDEANKFRLVIPQDWVVGNGE 138
            S F     +S + AE+               +E FR YTDE NKF + IPQDW VG  E
Sbjct: 66  SSVFFLPLAISPAFAETN-------------ASEAFRVYTDETNKFEISIPQDWQVGQAE 125

Query: 139 PNGFKSVTAFYPQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPG 198
           PNGFKS+TAFYPQETS+SNVS+ I+GLGPDFTRMESFGKVE FA+TLVSGLDRSW++P G
Sbjct: 126 PNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVG 185

Query: 199 VAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESEN 258
           V AKLID R+SKG YYIEYTLQNPGE+RKHLYSAIGMA+NGWYNRLYT+TGQ+ DEES  
Sbjct: 186 VTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAE 245

Query: 259 YSSKIEKVVNSFSFI 270
            SSKI+K V SF FI
Sbjct: 246 QSSKIQKTVKSFRFI 247

[Close]

BLAST of MC08g1531 vs. TAIR 10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 35/129 (27.13%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 146 PQETSSSNVSVVISGLGPDFTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKL-----I 205
           P  T   NVSV++S + P F+ +E+FG  +E  + +V  +  S +R       L      
Sbjct: 157 PGSTGELNVSVIVSPVSPSFS-IEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQ 216

Query: 206 DCRSSKGIYYIEYTLQNPGESRKHLYSAIGMASNGWYNRLYTITGQYADEESENYSSKIE 265
           D   +   Y +E+ +++P   R ++  A+  A +G   RLYT+  Q  +       S+I 
Sbjct: 217 DSERNLKYYELEFKVESPLFRRHNV--AVCCAHSG---RLYTLNAQAPESAWSEVKSEIY 276

Query: 266 KVVNSFSFI 270
               SF+ I
Sbjct: 277 TTAKSFNII 279

The following BLAST results are available for this feature:

BLAST of MC08g1531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S720	1.6e-77	58.04	PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MC08g1531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155885.1	4.70e-181	95.52	psbP domain-containing protein 3, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_022155884.1	1.26e-163	95.10	psbP domain-containing protein 3, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_038885576.1	9.01e-153	83.96	psbP domain-containing protein 3, chloroplastic [Benincasa hispida]	[more]
XP_022946502.1	1.62e-141	78.36	psbP domain-containing protein 3, chloroplastic [Cucurbita moschata] >KAG6599083...	[more]
XP_023546046.1	1.33e-140	77.99	psbP domain-containing protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC08g1531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNN6	2.28e-181	95.52	psbP domain-containing protein 3, chloroplastic isoform X2 OS=Momordica charanti...	[more]
A0A6J1DRN2	6.10e-164	95.10	psbP domain-containing protein 3, chloroplastic isoform X1 OS=Momordica charanti...	[more]
A0A6J1G3W9	7.86e-142	78.36	psbP domain-containing protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KI01	9.15e-141	77.99	psbP domain-containing protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KDI5	4.19e-136	77.86	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401450 PE=4 S...	[more]

BLAST of MC08g1531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76450.1	1.1e-78	58.04	Photosystem II reaction center PsbP family protein	[more]
AT3G05410.2	4.1e-04	27.13	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 109..268 e-value: 2.0E-35 score: 122.2
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 104..268 e-value: 1.9E-35 score: 124.2
None	No IPR available	PANTHER	PTHR31407:SF17	PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC	coord: 40..269
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 40..269
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 110..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1531.1	MC08g1531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding