MC08g1485 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g1485
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionReverse transcriptase
LocationMC08: 19757922 .. 19758171 (+)
RNA-Seq ExpressionMC08g1485
SyntenyMC08g1485
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGATCGTTTGTGTCGTTGGGACTCTTCTGTTCCTACTTCAGGTGTGTTTTATGCTGGCATGGAGTCCAGGACCATCTTTTCTTTGAGTGCCCCTCTGGTTGGGAGGTTGTATGATTGTTTGGGTTGGTTCTTCTCATCGCATTTCATATTGGTCTACTGAGCTTGCTTGGATTTGTCACATTAGTACCAGAAAGTCTGCTCGTCGTTGTGTGTGGTGTTTGACGTGGACTTCAGCTGTTTCATTTATC

mRNA sequence

AGGGATCGTTTGTGTCGTTGGGACTCTTCTGTTCCTACTTGTGTTTTATGCTGGCATGGAGTCCAGGACCATCTTTTCTTTGAGTGCCCCTCTGGTTGGGAGATGATTGTTTGGGTTGGTTCTTCTCATCGCATTTCATATTGGTCTACTGAGCTTGCTTGGATTTGTCACATTAGTACCAGAAAGTCTGCTCGTCGTTGTGTGTGGTGTTTGACGTGGACTTCAGCTGTTTCATTTATC

Coding sequence (CDS)

AGGGATCGTTTGTGTCGTTGGGACTCTTCTGTTCCTACTTGTGTTTTATGCTGGCATGGAGTCCAGGACCATCTTTTCTTTGAGTGCCCCTCTGGTTGGGAGATGATTGTTTGGGTTGGTTCTTCTCATCGCATTTCATATTGGTCTACTGAGCTTGCTTGGATTTGTCACATTAGTACCAGAAAGTCTGCTCGTCGTTGTGTGTGGTGTTTGACGTGGACTTCAGCTGTTTCATTTATC

Protein sequence

RDRLCRWDSSVPTCVLCWHGVQDHLFFECPSGWEMIVWVGSSHRISYWSTELAWICHISTRKSARRCVWCLTWTSAVSFI
Homology
BLAST of MC08g1485 vs. NCBI nr
Match: XP_022158861.1 (uncharacterized protein LOC111025324 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.81e-20
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WE-MIVWVGSSHRISYWSTELA 60
           R+RL +W++ VP TCV C  G++  DHLF +CP     W  MI W GSSHR+SYWSTEL 
Sbjct: 267 RERLRQWNALVPATCVFC-AGLESRDHLFLDCPYSRAVWAGMISWAGSSHRVSYWSTELT 326

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH++   S+RR VW L WT  VS +
Sbjct: 327 WICHVNVGSSSRRHVWRLAWTLTVSLL 352

BLAST of MC08g1485 vs. NCBI nr
Match: XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 6.39e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 827 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 886

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 887 WICHQGIRKGVRRKLWRVLWCATIYFI 913

BLAST of MC08g1485 vs. NCBI nr
Match: XP_031737043.1 (uncharacterized protein LOC116402131 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 6.39e-19
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSGWEM----IVWVGSSHRISYWSTELA 60
           RDRL +WD S+P +C+LC    +  DHLFF CP GWE+    ++++ SSHRI YW  EL+
Sbjct: 850 RDRLSQWDRSIPLSCMLCGGNYESRDHLFFSCPFGWEIWSRILLFMSSSHRIGYWGVELS 909

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WIC+    K  RR +W L W + + FI
Sbjct: 910 WICNQGIGKGVRRKLWHLLWCATIYFI 936

BLAST of MC08g1485 vs. NCBI nr
Match: TYK19523.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.39e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 875 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 934

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 935 WICHQGIRKGVRRKLWRVLWCATIYFI 961

BLAST of MC08g1485 vs. NCBI nr
Match: KAA0057642.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.40e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 894 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 953

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 954 WICHQGIRKGVRRKLWRVLWCATIYFI 980

BLAST of MC08g1485 vs. ExPASy TrEMBL
Match: A0A6J1E271 (uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025324 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.78e-21
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WE-MIVWVGSSHRISYWSTELA 60
           R+RL +W++ VP TCV C  G++  DHLF +CP     W  MI W GSSHR+SYWSTEL 
Sbjct: 267 RERLRQWNALVPATCVFC-AGLESRDHLFLDCPYSRAVWAGMISWAGSSHRVSYWSTELT 326

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH++   S+RR VW L WT  VS +
Sbjct: 327 WICHVNVGSSSRRHVWRLAWTLTVSLL 352

BLAST of MC08g1485 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.09e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 827 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 886

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 887 WICHQGIRKGVRRKLWRVLWCATIYFI 913

BLAST of MC08g1485 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.10e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 875 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 934

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 935 WICHQGIRKGVRRKLWRVLWCATIYFI 961

BLAST of MC08g1485 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.10e-19
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1   RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
           RDR  RWDSSVP +C+LC  G++  DHLFF CP G   W  ++ +  SSHRI +W  EL+
Sbjct: 894 RDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELS 953

Query: 61  WICHISTRKSARRCVWCLTWTSAVSFI 80
           WICH   RK  RR +W + W + + FI
Sbjct: 954 WICHQGIRKGVRRKLWRVLWCATIYFI 980

BLAST of MC08g1485 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.90e-19
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 1    RDRLCRWDSSVP-TCVLCWHGVQ--DHLFFECPSG---WEMIVWV-GSSHRISYWSTELA 60
            RDRL RWDSS+P +C+LC  GV+  DHLFF CP G   W  +  +  SSHRI +W  EL+
Sbjct: 999  RDRLHRWDSSIPLSCILCQGGVESRDHLFFSCPFGGDVWSRVFQIMESSHRIGHWGVELS 1058

Query: 61   WICHISTRKSARRCVWCLTWTSAVSFI 80
            WICH    K  RR +W + W + + FI
Sbjct: 1059 WICHRGIGKGVRRKLWRVLWCATIYFI 1085

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022158861.11.81e-2054.02uncharacterized protein LOC111025324 [Momordica charantia][more]
XP_008452126.16.39e-1949.43PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
XP_031737043.16.39e-1947.13uncharacterized protein LOC116402131 [Cucumis sativus][more]
TYK19523.16.39e-1949.43reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0057642.16.40e-1949.43reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1E2718.78e-2154.02uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A1S3BSI83.09e-1949.43uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=... [more]
A0A5D3D7P63.10e-1949.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41... [more]
A0A5A7UP653.10e-1949.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
A0A5A7TZS07.90e-1949.43Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g1485.1MC08g1485.1mRNA