MC08g1417 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1417
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 16043074 .. 16043196 (-)
RNA-Seq Expression	MC08g1417
Synteny	MC08g1417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAACCGTGTTTTGCCCAGAGATGCCTAGTTAATAGTTGCGCCTCAACGCATGTTAGGGAGAATGATCTAGCTCTAAGTTTGAATGACATTGCACCTCTAACCATAACTCATTCGCTCCTC

mRNA sequence

CCTAAACCGTGTTTTGCCCAGAGATGCCTAGTTAATAGTTGCGCCTCAACGCATGTTAGGGAGAATGATCTAGCTCTAAGTTTGAATGACATTGCACCTCTAACCATAACTCATTCGCTCCTC

Coding sequence (CDS)

CCTAAACCGTGTTTTGCCCAGAGATGCCTAGTTAATAGTTGCGCCTCAACGCATGTTAGGGAGAATGATCTAGCTCTAAGTTTGAATGACATTGCACCTCTAACCATAACTCATTCGCTCCTC

Protein sequence

PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL

Homology

[Close]

BLAST of MC08g1417 vs. NCBI nr
Match: YP_173415.1 (hypothetical protein NitaMp073 [Nicotiana tabacum] >BAD83479.1 hypothetical protein [Nicotiana tabacum])

HSP 1 Score: 57.0 bits (136), Expect = 6.55e-09
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1  PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
          PKPCF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 38 PKPCFTPRCPVNCCASTHFGENQLALGASGISPLTTTHPLI 78

[Close]

BLAST of MC08g1417 vs. NCBI nr
Match: TYI30076.1 (hypothetical protein ES332_A05G359600v1 [Gossypium tomentosum])

HSP 1 Score: 56.2 bits (134), Expect = 1.38e-07
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  +DI+PLT TH L+
Sbjct: 355 PKQCFTPRCPVNCCASTHFGENQLALGSSDISPLTTTHPLI 395

[Close]

BLAST of MC08g1417 vs. NCBI nr
Match: PLY86165.1 (hypothetical protein LSAT_6X94260 [Lactuca sativa])

HSP 1 Score: 53.5 bits (127), Expect = 3.59e-07
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 102 PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 142

[Close]

BLAST of MC08g1417 vs. NCBI nr
Match: KAG8363221.1 (hypothetical protein BUALT_BualtPtG0005500 [Buddleja alternifolia])

HSP 1 Score: 53.5 bits (127), Expect = 3.59e-07
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 102 PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 142

[Close]

BLAST of MC08g1417 vs. NCBI nr
Match: KAF1876777.1 (hypothetical protein Lal_00043707 [Lupinus albus])

HSP 1 Score: 53.5 bits (127), Expect = 1.14e-06
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 243 PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 283

[Close]

BLAST of MC08g1417 vs. ExPASy TrEMBL
Match: Q5M9Z9 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf106b PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.17e-09
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1  PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
          PKPCF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 38 PKPCFTPRCPVNCCASTHFGENQLALGASGISPLTTTHPLI 78

[Close]

BLAST of MC08g1417 vs. ExPASy TrEMBL
Match: J3LNA6 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.97e-08
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1  PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
          PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 39 PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 79

[Close]

BLAST of MC08g1417 vs. ExPASy TrEMBL
Match: A0A5D2QNQ6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G359600v1 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.66e-08
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  +DI+PLT TH L+
Sbjct: 355 PKQCFTPRCPVNCCASTHFGENQLALGSSDISPLTTTHPLI 395

[Close]

BLAST of MC08g1417 vs. ExPASy TrEMBL
Match: I1QKX6 (Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.72e-08
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 70  PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 110

[Close]

BLAST of MC08g1417 vs. ExPASy TrEMBL
Match: A0A2J6LFT8 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X94260 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.74e-07
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 1   PKPCFAQRCLVNSCASTHVRENDLALSLNDIAPLTITHSLL 41
           PK CF  RC VN CASTH  EN LAL  + I+PLT TH L+
Sbjct: 102 PKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLI 142

The following BLAST results are available for this feature:

BLAST of MC08g1417 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1417 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_173415.1	6.55e-09	63.41	hypothetical protein NitaMp073 [Nicotiana tabacum] >BAD83479.1 hypothetical prot...	[more]
TYI30076.1	1.38e-07	63.41	hypothetical protein ES332_A05G359600v1 [Gossypium tomentosum]	[more]
PLY86165.1	3.59e-07	60.98	hypothetical protein LSAT_6X94260 [Lactuca sativa]	[more]
KAG8363221.1	3.59e-07	60.98	hypothetical protein BUALT_BualtPtG0005500 [Buddleja alternifolia]	[more]
KAF1876777.1	1.14e-06	60.98	hypothetical protein Lal_00043707 [Lupinus albus]	[more]

BLAST of MC08g1417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q5M9Z9	3.17e-09	63.41	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf106b PE=4 SV=1	[more]
J3LNA6	4.97e-08	60.98	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]
A0A5D2QNQ6	6.66e-08	63.41	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G359600v1 P...	[more]
I1QKX6	9.72e-08	60.98	Uncharacterized protein OS=Oryza glaberrima OX=4538 PE=4 SV=1	[more]
A0A2J6LFT8	1.74e-07	60.98	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X94260 PE=4 SV=1	[more]

BLAST of MC08g1417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g1417.1	MC08g1417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity